Wall clock time and date at job start Tue Mar 31 2020 14:33:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47368 * 2 1
4 4 H 1.08995 * 109.46819 * 305.37631 * 3 2 1
5 5 C 1.52996 * 109.46777 * 65.37324 * 3 2 1
6 6 C 1.50703 * 109.47517 * 57.69995 * 5 3 2
7 7 O 1.21277 * 119.99598 * 6.10682 * 6 5 3
8 8 N 1.34774 * 120.00052 * 186.11838 * 6 5 3
9 9 C 1.46499 * 120.00068 * 179.97438 * 8 6 5
10 10 C 1.50694 * 109.47457 * 179.97438 * 9 8 6
11 11 C 1.38324 * 119.96534 * 270.02100 * 10 9 8
12 12 C 1.38276 * 120.14225 * 179.97438 * 11 10 9
13 13 C 1.38132 * 120.06559 * 359.67905 * 12 11 10
14 14 C 1.38860 * 119.92894 * 0.59400 * 13 12 11
15 15 O 1.35746 * 120.06768 * 179.69520 * 14 13 12
16 16 C 1.34830 * 117.00084 * 354.10846 * 15 14 13
17 17 H 1.07992 * 120.00060 * 5.02669 * 16 15 14
18 18 C 1.38659 * 119.99833 * 185.03487 * 16 15 14
19 19 N 1.31553 * 119.99842 * 179.97438 * 18 16 15
20 20 Si 1.86795 * 119.99987 * 359.97438 * 18 16 15
21 21 H 1.48504 * 109.47241 * 90.00575 * 20 18 16
22 22 H 1.48502 * 109.47359 * 210.00498 * 20 18 16
23 23 H 1.48501 * 109.47294 * 330.00524 * 20 18 16
24 24 C 1.38080 * 119.96731 * 89.99470 * 10 9 8
25 25 C 1.52992 * 109.46908 * 185.37495 * 3 2 1
26 26 C 1.52997 * 109.47700 * 59.99942 * 25 3 2
27 27 C 1.53003 * 109.46908 * 179.97438 * 25 3 2
28 28 H 1.09004 * 109.47299 * 304.83424 * 1 2 3
29 29 H 1.09001 * 109.46899 * 64.82720 * 1 2 3
30 30 H 1.08999 * 109.47640 * 184.83093 * 1 2 3
31 31 H 1.09001 * 109.47201 * 239.99704 * 2 1 3
32 32 H 1.09004 * 109.46500 * 119.99544 * 2 1 3
33 33 H 1.09001 * 109.47534 * 297.69419 * 5 3 2
34 34 H 1.09009 * 109.47057 * 177.69733 * 5 3 2
35 35 H 0.97005 * 120.00101 * 359.97438 * 8 6 5
36 36 H 1.09003 * 109.46866 * 59.99346 * 9 8 6
37 37 H 1.08997 * 109.46873 * 299.99767 * 9 8 6
38 38 H 1.08006 * 119.93114 * 359.97438 * 11 10 9
39 39 H 1.07997 * 119.96833 * 179.97438 * 12 11 10
40 40 H 1.07996 * 120.03381 * 180.31783 * 13 12 11
41 41 H 0.96998 * 119.99989 * 179.97438 * 19 18 16
42 42 H 1.07996 * 120.03385 * 0.04901 * 24 10 9
43 43 H 1.09008 * 109.47584 * 299.99471 * 25 3 2
44 44 H 1.08998 * 109.47862 * 180.02562 * 26 25 3
45 45 H 1.09003 * 109.47104 * 300.00341 * 26 25 3
46 46 H 1.08999 * 109.47230 * 59.99119 * 26 25 3
47 47 H 1.09001 * 109.47118 * 60.00265 * 27 25 3
48 48 H 1.09000 * 109.47037 * 179.97438 * 27 25 3
49 49 H 1.08996 * 109.47106 * 299.99676 * 27 25 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6003 1.9833 -0.8379
5 6 1.6433 2.1236 1.3113
6 6 2.2043 1.3436 2.4724
7 8 2.9479 0.4070 2.2709
8 7 1.8794 1.6868 3.7345
9 6 2.4242 0.9283 4.8632
10 6 1.9110 1.5110 6.1547
11 6 2.6182 2.5171 6.7879
12 6 2.1504 3.0548 7.9728
13 6 0.9712 2.5929 8.5244
14 6 0.2619 1.5791 7.8941
15 8 -0.8941 1.1188 8.4370
16 6 -1.2356 1.6007 9.6490
17 1 -0.6434 2.3789 10.1072
18 6 -2.3471 1.0968 10.3073
19 7 -2.6800 1.5666 11.4901
20 14 -3.3716 -0.2489 9.5146
21 1 -2.8410 -1.5765 9.9161
22 1 -4.7827 -0.1245 9.9605
23 1 -3.3059 -0.1158 8.0370
24 6 0.7350 1.0405 6.7045
25 6 3.5640 1.4445 -0.1351
26 6 3.9608 0.7633 -1.4464
27 6 4.0740 2.8870 -0.1358
28 1 -0.3634 0.5870 0.8435
29 1 -0.3633 0.4371 -0.9301
30 1 -0.3634 -1.0240 0.0865
31 1 1.8933 -0.5139 -0.8900
32 1 1.8932 -0.5138 0.8901
33 1 0.5566 2.1587 1.3883
34 1 2.0417 3.1382 1.3288
35 1 1.2847 2.4361 3.8957
36 1 3.5127 0.9842 4.8469
37 1 2.1127 -0.1133 4.7851
38 1 3.5378 2.8835 6.3559
39 1 2.7050 3.8399 8.4651
40 1 0.6036 3.0168 9.4472
41 1 -3.4578 1.2144 11.9505
42 1 0.1835 0.2547 6.2098
43 1 4.0039 0.9037 0.7029
44 1 5.0465 0.7643 -1.5424
45 1 3.5973 -0.2644 -1.4464
46 1 3.5209 1.3041 -2.2843
47 1 3.7915 3.3727 0.7982
48 1 5.1598 2.8885 -0.2316
49 1 3.6343 3.4275 -0.9739
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000113107352.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:33:42
Heat of formation + Delta-G solvation = -63.621614 kcal
Electronic energy + Delta-G solvation = -26596.602444 eV
Core-core repulsion = 22909.612405 eV
Total energy + Delta-G solvation = -3686.990039 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-40.39467 -39.32038 -37.56112 -36.74777 -34.51443 -33.00415 -32.46834 -31.26247
-29.94904 -29.32874 -27.26573 -26.28573 -25.27892 -24.43673 -21.90555 -21.69504
-20.80526 -20.65220 -19.70672 -17.84160 -17.37338 -16.74368 -16.10674 -15.72433
-15.36665 -15.13791 -14.87699 -14.72610 -14.31077 -14.03716 -13.93214 -13.71833
-13.54851 -13.26583 -12.96062 -12.75160 -12.61068 -12.39234 -12.27002 -12.16192
-12.14611 -12.01180 -11.76727 -11.54485 -11.49484 -11.05459 -10.96251 -10.87342
-10.78956 -10.72397 -10.38559 -10.33242 -10.23075 -9.49630 -9.44169 -8.98785
-8.94984 -8.35211 -7.51123 -6.48722 -4.16180 1.78700 2.12130 2.63690
3.16804 3.21363 3.34596 3.35951 4.17461 4.37318 4.51832 4.58362
4.63400 4.67639 4.91053 4.98899 5.02031 5.13403 5.20806 5.27143
5.31609 5.36000 5.37711 5.40639 5.48491 5.59475 5.61461 5.67730
5.71981 5.73423 5.81073 5.84555 5.85448 5.90741 5.98343 6.07108
6.12018 6.14141 6.26786 6.35572 6.36632 6.39309 6.62449 6.64869
6.96878 7.08286 7.17582 7.45302 7.55213 7.70486 7.94951 8.25499
8.86100 9.46929 10.58670
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018576 B = 0.002557 C = 0.002322
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1506.991826 B =10949.239838 C =12054.424413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.137 4.137
3 C -0.061 4.061
4 H 0.070 0.930
5 C -0.145 4.145
6 C 0.513 3.487
7 O -0.536 6.536
8 N -0.724 5.724
9 C 0.168 3.832
10 C -0.075 4.075
11 C -0.187 4.187
12 C -0.077 4.077
13 C -0.213 4.213
14 C 0.156 3.844
15 O -0.215 6.215
16 C -0.391 4.391
17 H 0.107 0.893
18 C 0.064 3.936
19 N -0.877 5.877
20 Si 0.905 3.095
21 H -0.273 1.273
22 H -0.282 1.282
23 H -0.260 1.260
24 C -0.172 4.172
25 C -0.108 4.108
26 C -0.145 4.145
27 C -0.148 4.148
28 H 0.052 0.948
29 H 0.049 0.951
30 H 0.051 0.949
31 H 0.061 0.939
32 H 0.090 0.910
33 H 0.092 0.908
34 H 0.095 0.905
35 H 0.402 0.598
36 H 0.072 0.928
37 H 0.072 0.928
38 H 0.109 0.891
39 H 0.112 0.888
40 H 0.134 0.866
41 H 0.280 0.720
42 H 0.118 0.882
43 H 0.103 0.897
44 H 0.049 0.951
45 H 0.057 0.943
46 H 0.047 0.953
47 H 0.052 0.948
48 H 0.051 0.949
49 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.515 2.065 -21.698 23.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.174 4.174
3 C -0.080 4.080
4 H 0.088 0.912
5 C -0.185 4.185
6 C 0.300 3.700
7 O -0.414 6.414
8 N -0.375 5.375
9 C 0.045 3.955
10 C -0.075 4.075
11 C -0.206 4.206
12 C -0.096 4.096
13 C -0.232 4.232
14 C 0.104 3.896
15 O -0.120 6.120
16 C -0.467 4.467
17 H 0.124 0.876
18 C -0.139 4.139
19 N -0.515 5.515
20 Si 0.731 3.269
21 H -0.198 1.198
22 H -0.207 1.207
23 H -0.184 1.184
24 C -0.191 4.191
25 C -0.126 4.126
26 C -0.202 4.202
27 C -0.205 4.205
28 H 0.071 0.929
29 H 0.068 0.932
30 H 0.070 0.930
31 H 0.080 0.920
32 H 0.108 0.892
33 H 0.110 0.890
34 H 0.113 0.887
35 H 0.237 0.763
36 H 0.090 0.910
37 H 0.090 0.910
38 H 0.127 0.873
39 H 0.130 0.870
40 H 0.152 0.848
41 H 0.090 0.910
42 H 0.136 0.864
43 H 0.121 0.879
44 H 0.068 0.932
45 H 0.076 0.924
46 H 0.066 0.934
47 H 0.071 0.929
48 H 0.070 0.930
49 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 9.712 1.209 -21.720 23.823
hybrid contribution -0.870 0.059 0.175 0.890
sum 8.841 1.268 -21.545 23.323
Atomic orbital electron populations
1.21849 0.96571 1.01501 1.01255 1.21912 0.95001 0.96557 1.03921
1.20932 0.95746 0.96294 0.94996 0.91159 1.21887 1.02441 1.00429
0.93706 1.20678 0.80905 0.84528 0.83877 1.90559 1.36645 1.29581
1.84621 1.46235 1.50539 1.35189 1.05521 1.20124 0.98096 0.95170
0.82117 1.19280 0.95158 0.97494 0.95615 1.20546 1.01424 1.00666
0.97986 1.20808 0.95284 0.98433 0.95028 1.21368 0.97577 1.00909
1.03360 1.19060 0.85957 0.92222 0.92338 1.83573 1.33081 1.61609
1.33781 1.20760 1.13194 1.21450 0.91284 0.87591 1.24472 0.96633
0.98008 0.94829 1.69640 1.27040 1.42147 1.12637 0.86181 0.78720
0.81292 0.80715 1.19818 1.20724 1.18371 1.20078 0.97904 1.04206
0.96962 1.21448 0.95051 0.96397 0.99743 1.21860 1.00688 1.00654
0.97031 1.21904 1.00741 0.96698 1.01206 0.92876 0.93231 0.92998
0.92019 0.89200 0.88981 0.88682 0.76341 0.90969 0.90963 0.87335
0.86985 0.84839 0.90955 0.86440 0.87915 0.93183 0.92444 0.93385
0.92907 0.93018 0.93161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.38 9.78 37.16 0.36 -1.02 16
2 C -0.14 -1.33 4.93 -26.73 -0.13 -1.47 16
3 C -0.06 -0.53 1.71 -90.62 -0.16 -0.69 16
4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
5 C -0.14 -1.24 4.91 -27.88 -0.14 -1.38 16
6 C 0.51 5.87 7.17 -10.99 -0.08 5.79 16
7 O -0.54 -7.55 11.41 5.56 0.06 -7.49 16
8 N -0.72 -8.28 5.55 -61.48 -0.34 -8.62 16
9 C 0.17 2.22 5.80 -5.20 -0.03 2.19 16
10 C -0.07 -1.16 5.25 -104.65 -0.55 -1.71 16
11 C -0.19 -2.85 9.70 -39.54 -0.38 -3.23 16
12 C -0.08 -1.29 10.04 -39.61 -0.40 -1.69 16
13 C -0.21 -4.32 9.17 -39.39 -0.36 -4.68 16
14 C 0.16 3.42 6.65 -39.11 -0.26 3.16 16
15 O -0.22 -5.48 8.59 0.06 0.00 -5.48 16
16 C -0.39 -10.70 9.95 30.89 0.31 -10.40 16
17 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16
18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16
19 N -0.88 -24.81 13.96 55.48 0.77 -24.03 16
20 Si 0.91 21.22 28.62 -169.99 -4.86 16.35 16
21 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16
22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
23 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16
24 C -0.17 -3.17 9.65 -39.39 -0.38 -3.55 16
25 C -0.11 -1.01 2.24 -90.62 -0.20 -1.21 16
26 C -0.15 -1.22 8.85 37.16 0.33 -0.89 16
27 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16
28 H 0.05 0.48 6.41 -51.93 -0.33 0.14 16
29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.06 0.57 6.16 -51.93 -0.32 0.25 16
32 H 0.09 1.11 5.43 -51.93 -0.28 0.82 16
33 H 0.09 0.69 6.59 -51.93 -0.34 0.35 16
34 H 0.10 0.68 6.31 -51.92 -0.33 0.36 16
35 H 0.40 4.10 8.46 -40.82 -0.35 3.75 16
36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16
37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16
38 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16
39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16
40 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16
41 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16
42 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16
43 H 0.10 1.23 5.50 -51.92 -0.29 0.94 16
44 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
45 H 0.06 0.49 6.31 -51.93 -0.33 0.17 16
46 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
47 H 0.05 0.43 6.38 -51.93 -0.33 0.10 16
48 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16
49 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
LS Contribution 383.84 15.07 5.78 5.78
Total: -1.00 -28.91 383.84 -8.10 -37.00
By element:
Atomic # 1 Polarization: 14.14 SS G_CDS: -7.68 Total: 6.46 kcal
Atomic # 6 Polarization: -18.14 SS G_CDS: -1.84 Total: -19.98 kcal
Atomic # 7 Polarization: -33.09 SS G_CDS: 0.43 Total: -32.65 kcal
Atomic # 8 Polarization: -13.03 SS G_CDS: 0.06 Total: -12.97 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.35 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -28.91 -8.10 -37.00 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113107352.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.621 kcal
(2) G-P(sol) polarization free energy of solvation -28.905 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.622 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds