Wall clock time and date at job start Tue Mar 31 2020 14:33:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.47368 * 2 1
4 4 H 1.08995 * 109.46819 * 305.37631 * 3 2 1
5 5 C 1.52996 * 109.46777 * 65.37324 * 3 2 1
6 6 C 1.50703 * 109.47517 * 57.69995 * 5 3 2
7 7 O 1.21277 * 119.99598 * 6.10682 * 6 5 3
8 8 N 1.34774 * 120.00052 * 186.11838 * 6 5 3
9 9 C 1.46499 * 120.00068 * 179.97438 * 8 6 5
10 10 C 1.50694 * 109.47457 * 179.97438 * 9 8 6
11 11 C 1.38324 * 119.96534 * 270.02100 * 10 9 8
12 12 C 1.38276 * 120.14225 * 179.97438 * 11 10 9
13 13 C 1.38132 * 120.06559 * 359.67905 * 12 11 10
14 14 C 1.38860 * 119.92894 * 0.59400 * 13 12 11
15 15 O 1.35746 * 120.06768 * 179.69520 * 14 13 12
16 16 C 1.34830 * 117.00084 * 354.10846 * 15 14 13
17 17 H 1.07992 * 120.00060 * 5.02669 * 16 15 14
18 18 C 1.38659 * 119.99833 * 185.03487 * 16 15 14
19 19 N 1.31553 * 119.99842 * 179.97438 * 18 16 15
20 20 Si 1.86795 * 119.99987 * 359.97438 * 18 16 15
21 21 H 1.48504 * 109.47241 * 90.00575 * 20 18 16
22 22 H 1.48502 * 109.47359 * 210.00498 * 20 18 16
23 23 H 1.48501 * 109.47294 * 330.00524 * 20 18 16
24 24 C 1.38080 * 119.96731 * 89.99470 * 10 9 8
25 25 C 1.52992 * 109.46908 * 185.37495 * 3 2 1
26 26 C 1.52997 * 109.47700 * 59.99942 * 25 3 2
27 27 C 1.53003 * 109.46908 * 179.97438 * 25 3 2
28 28 H 1.09004 * 109.47299 * 304.83424 * 1 2 3
29 29 H 1.09001 * 109.46899 * 64.82720 * 1 2 3
30 30 H 1.08999 * 109.47640 * 184.83093 * 1 2 3
31 31 H 1.09001 * 109.47201 * 239.99704 * 2 1 3
32 32 H 1.09004 * 109.46500 * 119.99544 * 2 1 3
33 33 H 1.09001 * 109.47534 * 297.69419 * 5 3 2
34 34 H 1.09009 * 109.47057 * 177.69733 * 5 3 2
35 35 H 0.97005 * 120.00101 * 359.97438 * 8 6 5
36 36 H 1.09003 * 109.46866 * 59.99346 * 9 8 6
37 37 H 1.08997 * 109.46873 * 299.99767 * 9 8 6
38 38 H 1.08006 * 119.93114 * 359.97438 * 11 10 9
39 39 H 1.07997 * 119.96833 * 179.97438 * 12 11 10
40 40 H 1.07996 * 120.03381 * 180.31783 * 13 12 11
41 41 H 0.96998 * 119.99989 * 179.97438 * 19 18 16
42 42 H 1.07996 * 120.03385 * 0.04901 * 24 10 9
43 43 H 1.09008 * 109.47584 * 299.99471 * 25 3 2
44 44 H 1.08998 * 109.47862 * 180.02562 * 26 25 3
45 45 H 1.09003 * 109.47104 * 300.00341 * 26 25 3
46 46 H 1.08999 * 109.47230 * 59.99119 * 26 25 3
47 47 H 1.09001 * 109.47118 * 60.00265 * 27 25 3
48 48 H 1.09000 * 109.47037 * 179.97438 * 27 25 3
49 49 H 1.08996 * 109.47106 * 299.99676 * 27 25 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.6003 1.9833 -0.8379
5 6 1.6433 2.1236 1.3113
6 6 2.2043 1.3436 2.4724
7 8 2.9479 0.4070 2.2709
8 7 1.8794 1.6868 3.7345
9 6 2.4242 0.9283 4.8632
10 6 1.9110 1.5110 6.1547
11 6 2.6182 2.5171 6.7879
12 6 2.1504 3.0548 7.9728
13 6 0.9712 2.5929 8.5244
14 6 0.2619 1.5791 7.8941
15 8 -0.8941 1.1188 8.4370
16 6 -1.2356 1.6007 9.6490
17 1 -0.6434 2.3789 10.1072
18 6 -2.3471 1.0968 10.3073
19 7 -2.6800 1.5666 11.4901
20 14 -3.3716 -0.2489 9.5146
21 1 -2.8410 -1.5765 9.9161
22 1 -4.7827 -0.1245 9.9605
23 1 -3.3059 -0.1158 8.0370
24 6 0.7350 1.0405 6.7045
25 6 3.5640 1.4445 -0.1351
26 6 3.9608 0.7633 -1.4464
27 6 4.0740 2.8870 -0.1358
28 1 -0.3634 0.5870 0.8435
29 1 -0.3633 0.4371 -0.9301
30 1 -0.3634 -1.0240 0.0865
31 1 1.8933 -0.5139 -0.8900
32 1 1.8932 -0.5138 0.8901
33 1 0.5566 2.1587 1.3883
34 1 2.0417 3.1382 1.3288
35 1 1.2847 2.4361 3.8957
36 1 3.5127 0.9842 4.8469
37 1 2.1127 -0.1133 4.7851
38 1 3.5378 2.8835 6.3559
39 1 2.7050 3.8399 8.4651
40 1 0.6036 3.0168 9.4472
41 1 -3.4578 1.2144 11.9505
42 1 0.1835 0.2547 6.2098
43 1 4.0039 0.9037 0.7029
44 1 5.0465 0.7643 -1.5424
45 1 3.5973 -0.2644 -1.4464
46 1 3.5209 1.3041 -2.2843
47 1 3.7915 3.3727 0.7982
48 1 5.1598 2.8885 -0.2316
49 1 3.6343 3.4275 -0.9739
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000113107352.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:33:39
Heat of formation + Delta-G solvation = -79.286039 kcal
Electronic energy + Delta-G solvation = -26597.281704 eV
Core-core repulsion = 22909.612405 eV
Total energy + Delta-G solvation = -3687.669299 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.62 seconds
Orbital eigenvalues (eV)
-41.33185 -40.85014 -38.80714 -37.88657 -35.61999 -34.46077 -33.70431 -32.46144
-31.14708 -30.55102 -27.90995 -27.54960 -26.97493 -25.34801 -23.34206 -22.55471
-22.21185 -21.50894 -20.57230 -19.67508 -18.95002 -17.67081 -17.00302 -16.92815
-16.72275 -16.53087 -15.91330 -15.71956 -15.68003 -15.47314 -15.05707 -14.87500
-14.66250 -14.37668 -14.22456 -14.07689 -13.82917 -13.62892 -13.37804 -13.12371
-12.99572 -12.87304 -12.74394 -12.59259 -12.49259 -12.45635 -12.37623 -12.22200
-11.95236 -11.80012 -11.44993 -11.32604 -11.08803 -11.01533 -10.92888 -10.35278
-9.96360 -9.75842 -9.12928 -8.50992 -6.23775 0.35327 0.63909 1.31039
1.34416 1.50638 1.76207 2.26613 2.35103 2.80204 2.97977 3.16267
3.74644 3.81156 3.88235 3.98743 4.05673 4.21350 4.26800 4.33455
4.41454 4.49347 4.51497 4.60455 4.64286 4.67207 4.67812 4.70702
4.78209 4.86367 4.92209 4.92802 5.02030 5.10167 5.16459 5.18360
5.19192 5.21544 5.35979 5.38411 5.41513 5.50840 5.56256 5.62389
5.63200 5.68395 5.74254 5.84607 5.88507 6.18616 6.64882 6.83490
7.37549 7.57357 8.60408
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018576 B = 0.002557 C = 0.002322
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1506.991826 B =10949.239838 C =12054.424413
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.135 4.135
3 C -0.059 4.059
4 H 0.088 0.912
5 C -0.140 4.140
6 C 0.511 3.489
7 O -0.563 6.563
8 N -0.721 5.721
9 C 0.175 3.825
10 C -0.060 4.060
11 C -0.160 4.160
12 C -0.074 4.074
13 C -0.229 4.229
14 C 0.120 3.880
15 O -0.245 6.245
16 C -0.398 4.398
17 H 0.083 0.917
18 C 0.011 3.989
19 N -0.922 5.922
20 Si 0.968 3.032
21 H -0.268 1.268
22 H -0.268 1.268
23 H -0.262 1.262
24 C -0.171 4.171
25 C -0.108 4.108
26 C -0.144 4.144
27 C -0.146 4.146
28 H 0.052 0.948
29 H 0.063 0.937
30 H 0.044 0.956
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.107 0.893
34 H 0.115 0.885
35 H 0.410 0.590
36 H 0.083 0.917
37 H 0.064 0.936
38 H 0.148 0.852
39 H 0.144 0.856
40 H 0.110 0.890
41 H 0.285 0.715
42 H 0.121 0.879
43 H 0.074 0.926
44 H 0.049 0.951
45 H 0.050 0.950
46 H 0.059 0.941
47 H 0.053 0.947
48 H 0.048 0.952
49 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.790 2.852 -24.743 27.144
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.172 4.172
3 C -0.078 4.078
4 H 0.107 0.893
5 C -0.180 4.180
6 C 0.300 3.700
7 O -0.442 6.442
8 N -0.373 5.373
9 C 0.052 3.948
10 C -0.060 4.060
11 C -0.178 4.178
12 C -0.092 4.092
13 C -0.249 4.249
14 C 0.071 3.929
15 O -0.153 6.153
16 C -0.474 4.474
17 H 0.101 0.899
18 C -0.188 4.188
19 N -0.563 5.563
20 Si 0.791 3.209
21 H -0.193 1.193
22 H -0.192 1.192
23 H -0.187 1.187
24 C -0.190 4.190
25 C -0.126 4.126
26 C -0.201 4.201
27 C -0.203 4.203
28 H 0.071 0.929
29 H 0.082 0.918
30 H 0.064 0.936
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.125 0.875
34 H 0.133 0.867
35 H 0.246 0.754
36 H 0.101 0.899
37 H 0.083 0.917
38 H 0.166 0.834
39 H 0.161 0.839
40 H 0.128 0.872
41 H 0.094 0.906
42 H 0.139 0.861
43 H 0.092 0.908
44 H 0.068 0.932
45 H 0.069 0.931
46 H 0.079 0.921
47 H 0.072 0.928
48 H 0.067 0.933
49 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 11.018 2.018 -24.795 27.208
hybrid contribution -0.930 -0.109 0.921 1.314
sum 10.088 1.909 -23.874 25.988
Atomic orbital electron populations
1.21837 0.95877 1.01300 1.01984 1.21844 0.95555 0.97192 1.02590
1.20944 0.95371 0.95696 0.95745 0.89341 1.21938 1.03228 1.00765
0.92027 1.21203 0.80321 0.84244 0.84265 1.90578 1.37870 1.30844
1.84958 1.46155 1.50710 1.35272 1.05134 1.19975 0.98557 0.94850
0.81448 1.19504 0.93599 0.96742 0.96172 1.21025 1.01759 0.98637
0.96415 1.21143 0.93827 0.98759 0.95426 1.21400 0.99223 1.01234
1.03019 1.19577 0.86017 0.93564 0.93776 1.83518 1.35414 1.63130
1.33204 1.20701 1.13240 1.21141 0.92355 0.89904 1.25251 0.97833
1.00305 0.95394 1.69721 1.28258 1.44166 1.14108 0.85250 0.77726
0.78551 0.79401 1.19307 1.19244 1.18675 1.20268 0.98840 1.04142
0.95775 1.21378 0.95380 0.96896 0.98959 1.21842 1.00772 1.00369
0.97100 1.21879 1.00686 0.95885 1.01822 0.92916 0.91773 0.93633
0.91909 0.92001 0.87536 0.86679 0.75393 0.89921 0.91737 0.83395
0.83866 0.87237 0.90581 0.86064 0.90766 0.93209 0.93144 0.92149
0.92777 0.93259 0.91825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.44 9.78 71.98 0.70 -1.74 16
2 C -0.13 -2.43 4.93 30.59 0.15 -2.28 16
3 C -0.06 -0.88 1.71 -10.80 -0.02 -0.90 16
4 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16
5 C -0.14 -1.96 4.91 29.85 0.15 -1.82 16
6 C 0.51 10.52 7.17 87.66 0.63 11.15 16
7 O -0.56 -15.16 11.41 -3.02 -0.03 -15.20 16
8 N -0.72 -14.42 5.55 -466.80 -2.59 -17.01 16
9 C 0.18 4.14 5.80 85.63 0.50 4.63 16
10 C -0.06 -1.68 5.25 -19.88 -0.10 -1.78 16
11 C -0.16 -4.21 9.70 22.30 0.22 -4.00 16
12 C -0.07 -2.28 10.04 22.25 0.22 -2.06 16
13 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16
14 C 0.12 5.32 6.65 22.58 0.15 5.47 16
15 O -0.25 -12.94 8.59 -22.69 -0.19 -13.14 16
16 C -0.40 -22.93 9.95 67.92 0.68 -22.26 16
17 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16
18 C 0.01 0.61 5.49 84.84 0.47 1.08 16
19 N -0.92 -54.34 13.96 21.61 0.30 -54.04 16
20 Si 0.97 44.89 28.62 68.60 1.96 46.86 16
21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16
22 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
23 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16
24 C -0.17 -6.14 9.65 22.39 0.22 -5.93 16
25 C -0.11 -1.80 2.24 -10.80 -0.02 -1.82 16
26 C -0.14 -2.16 8.85 71.98 0.64 -1.53 16
27 C -0.15 -1.98 8.84 71.98 0.64 -1.34 16
28 H 0.05 0.83 6.41 -2.38 -0.02 0.82 16
29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16
31 H 0.06 1.09 6.16 -2.39 -0.01 1.08 16
32 H 0.06 1.50 5.43 -2.38 -0.01 1.48 16
33 H 0.11 1.23 6.59 -2.39 -0.02 1.21 16
34 H 0.12 1.19 6.31 -2.38 -0.02 1.18 16
35 H 0.41 6.99 8.46 -92.70 -0.78 6.21 16
36 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16
37 H 0.06 1.67 8.08 -2.39 -0.02 1.65 16
38 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16
39 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16
40 H 0.11 5.01 5.64 -2.91 -0.02 5.00 16
41 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16
42 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16
43 H 0.07 1.71 5.50 -2.38 -0.01 1.70 16
44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16
45 H 0.05 0.82 6.31 -2.39 -0.02 0.80 16
46 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
47 H 0.05 0.71 6.38 -2.39 -0.02 0.70 16
48 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
49 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -66.28 383.84 5.02 -61.26
By element:
Atomic # 1 Polarization: 25.45 SS G_CDS: 0.17 Total: 25.62 kcal
Atomic # 6 Polarization: -39.76 SS G_CDS: 5.41 Total: -34.36 kcal
Atomic # 7 Polarization: -68.76 SS G_CDS: -2.29 Total: -71.05 kcal
Atomic # 8 Polarization: -28.10 SS G_CDS: -0.23 Total: -28.33 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 1.96 Total: 46.86 kcal
Total: -66.28 5.02 -61.26 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000113107352.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.024 kcal
(2) G-P(sol) polarization free energy of solvation -66.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.62 seconds