Wall clock time and date at job start Tue Mar 31 2020 14:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47139 * 2 1 4 4 H 1.09000 * 109.46565 * 304.99712 * 3 2 1 5 5 C 1.52997 * 109.46966 * 184.99783 * 3 2 1 6 6 C 1.50699 * 109.47226 * 64.99988 * 5 3 2 7 7 O 1.21274 * 119.99925 * 359.97438 * 6 5 3 8 8 N 1.34778 * 119.99882 * 179.97438 * 6 5 3 9 9 C 1.46497 * 119.99801 * 0.02562 * 8 6 5 10 10 C 1.46500 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.09000 * 109.47175 * 0.02562 * 10 8 6 12 12 C 1.53006 * 109.46998 * 240.00388 * 10 8 6 13 13 C 1.50697 * 109.46896 * 120.00459 * 10 8 6 14 14 H 1.07994 * 120.00496 * 359.97438 * 13 10 8 15 15 C 1.37878 * 119.99687 * 179.97438 * 13 10 8 16 16 N 1.31518 * 120.00216 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00016 * 179.97438 * 15 13 10 18 18 H 1.48505 * 109.47195 * 90.00222 * 17 15 13 19 19 H 1.48504 * 109.47636 * 210.00509 * 17 15 13 20 20 H 1.48508 * 109.47108 * 330.00152 * 17 15 13 21 21 C 1.50696 * 109.47100 * 64.99711 * 3 2 1 22 22 C 1.38266 * 119.94611 * 59.72643 * 21 3 2 23 23 C 1.38149 * 120.05558 * 179.72422 * 22 21 3 24 24 C 1.38732 * 119.94101 * 0.54916 * 23 22 21 25 25 O 1.35905 * 120.05257 * 179.74375 * 24 23 22 26 26 C 1.42905 * 117.00051 * 359.97438 * 25 24 23 27 27 C 1.38729 * 119.88919 * 359.72813 * 24 23 22 28 28 C 1.38136 * 119.94431 * 359.97438 * 27 24 23 29 29 H 1.08998 * 109.46993 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47296 * 300.00196 * 1 2 3 31 31 H 1.08999 * 109.46855 * 60.00728 * 1 2 3 32 32 H 1.08998 * 109.47296 * 239.99804 * 2 1 3 33 33 H 1.09005 * 109.47045 * 119.99633 * 2 1 3 34 34 H 1.09002 * 109.47504 * 304.99821 * 5 3 2 35 35 H 1.08999 * 109.46778 * 185.00182 * 5 3 2 36 36 H 1.08999 * 109.47264 * 269.99330 * 9 8 6 37 37 H 1.09000 * 109.47703 * 29.99711 * 9 8 6 38 38 H 1.09007 * 109.46950 * 150.00077 * 9 8 6 39 39 H 1.09000 * 109.47050 * 299.99945 * 12 10 8 40 40 H 1.09001 * 109.46801 * 60.00058 * 12 10 8 41 41 H 1.09001 * 109.46998 * 179.97438 * 12 10 8 42 42 H 0.96999 * 120.00239 * 180.02562 * 16 15 13 43 43 H 1.07996 * 119.97153 * 359.97438 * 22 21 3 44 44 H 1.07997 * 120.02750 * 180.27047 * 23 22 21 45 45 H 1.09001 * 109.47299 * 59.99348 * 26 25 24 46 46 H 1.08991 * 109.47020 * 179.97438 * 26 25 24 47 47 H 1.09005 * 109.46733 * 299.99380 * 26 25 24 48 48 H 1.08002 * 120.02377 * 179.97438 * 27 24 23 49 49 H 1.08004 * 119.96887 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4443 -0.1257 6 6 3.9590 0.8821 -1.4671 7 8 3.1045 0.5156 -2.2458 8 7 5.2611 0.7866 -1.8015 9 6 6.2933 1.2288 -0.8606 10 6 5.6443 0.2395 -3.1054 11 1 4.7481 -0.0333 -3.6626 12 6 6.5160 -1.0014 -2.9016 13 6 6.4190 1.2764 -3.8771 14 1 6.6068 2.2461 -3.4403 15 6 6.8881 0.9871 -5.1410 16 7 6.6591 -0.1935 -5.6732 17 14 7.8478 2.2726 -6.0979 18 1 9.2958 2.1337 -5.7987 19 1 7.6220 2.0777 -7.5527 20 1 7.3886 3.6286 -5.7031 21 6 1.6413 2.1163 1.2876 22 6 2.0727 1.6038 2.4972 23 6 1.7132 2.2229 3.6787 24 6 0.9093 3.3532 3.6514 25 8 0.5500 3.9611 4.8126 26 6 1.0357 3.3819 6.0254 27 6 0.4730 3.8621 2.4368 28 6 0.8403 3.2429 1.2579 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.9954 0.8311 0.6660 35 1 3.9355 2.4654 -0.0365 36 1 6.5145 2.2821 -1.0327 37 1 5.9359 1.0946 0.1603 38 1 7.1976 0.6386 -1.0096 39 1 7.4123 -0.7282 -2.3445 40 1 5.9556 -1.7513 -2.3433 41 1 6.8008 -1.4087 -3.8717 42 1 6.9894 -0.3972 -6.5622 43 1 2.6946 0.7211 2.5181 44 1 2.0541 1.8248 4.6229 45 1 2.1257 3.3847 6.0183 46 1 0.6767 3.9630 6.8747 47 1 0.6755 2.3564 6.1080 48 1 -0.1533 4.7417 2.4130 49 1 0.5012 3.6390 0.3120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125171043.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:00 Heat of formation + Delta-G solvation = -78.687205 kcal Electronic energy + Delta-G solvation = -27151.978312 eV Core-core repulsion = 23464.334981 eV Total energy + Delta-G solvation = -3687.643332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34085 -40.67478 -38.96106 -37.21194 -35.84624 -34.78932 -32.12731 -31.95316 -31.16938 -29.96163 -28.02727 -27.54638 -27.25919 -25.53476 -23.94457 -23.03281 -22.71897 -20.91010 -19.70277 -19.06787 -18.51271 -17.95728 -17.31821 -16.88790 -16.58189 -16.34148 -16.18990 -15.95395 -15.47898 -15.11714 -14.89881 -14.60137 -14.50265 -14.32571 -14.10243 -14.05086 -13.50664 -13.44253 -13.39603 -13.10884 -12.93264 -12.80946 -12.73942 -12.68252 -12.60263 -12.25537 -12.16247 -12.12167 -12.10880 -11.92995 -11.61261 -11.49672 -11.35983 -11.14105 -10.58284 -10.34541 -9.89087 -9.24902 -8.97638 -8.13670 -6.30115 0.45292 0.49828 1.40324 1.42139 1.51845 1.90911 2.35116 2.44259 2.54349 2.85387 3.13770 3.67847 3.76333 3.99292 4.05845 4.13314 4.17806 4.36814 4.37455 4.43992 4.44186 4.49785 4.58501 4.59431 4.66442 4.72842 4.76359 4.79345 4.81420 4.87896 4.90441 4.98154 5.06574 5.08013 5.11921 5.17532 5.24283 5.33829 5.42819 5.43488 5.48249 5.57919 5.66461 5.71615 5.81057 5.87934 6.07417 6.18913 6.51341 6.78609 6.92127 7.35658 7.56996 8.90261 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.002684 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.690207 B =10429.341707 C =10807.236775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.021 4.021 4 H 0.061 0.939 5 C -0.118 4.118 6 C 0.493 3.507 7 O -0.595 6.595 8 N -0.605 5.605 9 C 0.083 3.917 10 C 0.261 3.739 11 H 0.008 0.992 12 C -0.132 4.132 13 C -0.536 4.536 14 H 0.058 0.942 15 C 0.014 3.986 16 N -0.918 5.918 17 Si 0.963 3.037 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.106 4.106 22 C -0.075 4.075 23 C -0.203 4.203 24 C 0.108 3.892 25 O -0.338 6.338 26 C 0.019 3.981 27 C -0.161 4.161 28 C -0.083 4.083 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.066 0.934 42 H 0.264 0.736 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.064 0.936 46 H 0.116 0.884 47 H 0.064 0.936 48 H 0.135 0.865 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.122 5.199 24.163 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 C -0.040 4.040 4 H 0.080 0.920 5 C -0.157 4.157 6 C 0.283 3.717 7 O -0.477 6.477 8 N -0.336 5.336 9 C -0.059 4.059 10 C 0.159 3.841 11 H 0.026 0.974 12 C -0.191 4.191 13 C -0.575 4.575 14 H 0.076 0.924 15 C -0.186 4.186 16 N -0.557 5.557 17 Si 0.788 3.212 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.107 4.107 22 C -0.093 4.093 23 C -0.222 4.222 24 C 0.063 3.937 25 O -0.252 6.252 26 C -0.076 4.076 27 C -0.179 4.179 28 C -0.101 4.101 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.083 0.917 46 H 0.134 0.866 47 H 0.082 0.918 48 H 0.152 0.848 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.611 5.074 23.642 25.668 hybrid contribution 0.616 0.260 -1.143 1.324 sum -7.995 5.334 22.499 24.466 Atomic orbital electron populations 1.21655 0.95349 1.01444 1.01289 1.21644 0.96582 0.95407 1.01924 1.19753 0.93230 0.96543 0.94462 0.92015 1.21754 0.97176 1.03290 0.93489 1.21381 0.82002 0.78353 0.89987 1.90596 1.50437 1.52134 1.54574 1.48270 1.06199 1.61113 1.17986 1.21792 0.91783 0.99866 0.92485 1.18488 0.93682 0.91983 0.79964 0.97356 1.21873 0.98754 0.97081 1.01370 1.21586 1.34970 0.99788 1.01163 0.92385 1.25735 0.97104 0.97473 0.98265 1.70025 1.46703 1.22338 1.16622 0.85480 0.79106 0.79120 0.77446 1.19239 1.21169 1.19656 1.19652 1.00044 0.96620 0.94362 1.20973 0.98275 0.99279 0.90797 1.21423 1.03035 0.97522 1.00194 1.19200 0.95316 0.92766 0.86368 1.86038 1.71479 1.54020 1.13708 1.23315 1.00285 1.00113 0.83843 1.20542 1.04728 1.02809 0.89854 1.21012 0.96590 0.94680 0.97863 0.92581 0.92171 0.93972 0.92942 0.91009 0.86584 0.87900 0.92995 0.88566 0.91319 0.93420 0.96064 0.91564 0.92704 0.84251 0.83363 0.91747 0.86568 0.91779 0.84760 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.73 71.98 0.70 -2.75 16 2 C -0.12 -3.23 5.08 30.59 0.16 -3.07 16 3 C -0.02 -0.55 1.68 -11.54 -0.02 -0.57 16 4 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 5 C -0.12 -3.19 3.47 29.85 0.10 -3.08 16 6 C 0.49 19.80 7.35 87.66 0.64 20.45 16 7 O -0.60 -29.36 13.31 -3.01 -0.04 -29.40 16 8 N -0.61 -25.38 2.75 -826.79 -2.28 -27.66 16 9 C 0.08 2.57 9.48 127.77 1.21 3.78 16 10 C 0.26 13.70 2.64 44.25 0.12 13.81 16 11 H 0.01 0.53 6.90 -2.39 -0.02 0.52 16 12 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 13 C -0.54 -29.52 8.37 25.60 0.21 -29.31 16 14 H 0.06 3.12 7.65 -2.91 -0.02 3.09 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.49 11.32 21.45 0.24 -53.25 16 17 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 C -0.11 -2.32 3.76 -19.85 -0.07 -2.39 16 22 C -0.08 -1.38 8.70 22.26 0.19 -1.19 16 23 C -0.20 -3.44 9.04 22.37 0.20 -3.24 16 24 C 0.11 2.14 6.69 22.51 0.15 2.29 16 25 O -0.34 -6.19 10.50 -92.48 -0.97 -7.16 16 26 C 0.02 0.18 9.81 113.37 1.11 1.29 16 27 C -0.16 -3.31 9.99 22.36 0.22 -3.08 16 28 C -0.08 -1.79 9.66 22.25 0.22 -1.58 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.34 7.38 -2.39 -0.02 1.32 16 31 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.86 5.88 -2.39 -0.01 1.84 16 33 H 0.07 1.64 7.20 -2.38 -0.02 1.62 16 34 H 0.12 2.44 6.84 -2.39 -0.02 2.42 16 35 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 2.10 6.44 -2.39 -0.02 2.09 16 38 H 0.07 2.16 6.42 -2.38 -0.02 2.15 16 39 H 0.05 2.08 6.66 -2.39 -0.02 2.07 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 3.58 6.07 -2.39 -0.01 3.56 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.14 2.08 7.12 -2.91 -0.02 2.06 16 44 H 0.15 1.73 6.30 -2.91 -0.02 1.72 16 45 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 46 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.06 0.50 7.66 -2.38 -0.02 0.48 16 48 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 49 H 0.13 2.65 7.94 -2.91 -0.02 2.62 16 Total: -1.00 -71.37 385.45 6.15 -65.22 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.93 Total: 19.89 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 6.24 Total: -13.21 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -2.03 Total: -80.91 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -1.01 Total: -36.56 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -71.37 6.15 -65.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125171043.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.472 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds