Wall clock time and date at job start Tue Mar 31 2020 13:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 C 1.53007 * 109.46841 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.42906 * 114.00077 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46834 * 330.00144 * 6 5 4 8 8 C 1.52994 * 109.46816 * 89.99837 * 6 5 4 9 9 C 1.50695 * 109.47045 * 210.00000 * 6 5 4 10 10 O 1.21274 * 120.00413 * 0.27121 * 9 6 5 11 11 N 1.34784 * 119.99635 * 180.02562 * 9 6 5 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 6 13 13 H 1.09007 * 109.46956 * 325.00197 * 12 11 9 14 14 C 1.52999 * 109.47155 * 205.00183 * 12 11 9 15 15 C 1.50699 * 109.47123 * 65.00154 * 14 12 11 16 16 H 1.08000 * 120.00148 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99668 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46721 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47023 * 119.99588 * 19 17 15 22 22 H 1.48492 * 109.47153 * 240.00173 * 19 17 15 23 23 C 1.50701 * 109.47118 * 84.99565 * 12 11 9 24 24 C 1.38242 * 119.99723 * 39.73149 * 23 12 11 25 25 C 1.38232 * 119.99896 * 179.78464 * 24 23 12 26 26 C 1.38237 * 120.00049 * 0.43906 * 25 24 23 27 27 C 1.38239 * 120.00140 * 359.81435 * 26 25 24 28 28 C 1.38237 * 120.00201 * 219.99877 * 23 12 11 29 29 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47292 * 299.99922 * 1 2 3 31 31 H 1.08997 * 109.47392 * 60.00226 * 1 2 3 32 32 H 1.09002 * 109.47292 * 240.00077 * 2 1 3 33 33 H 1.08997 * 109.47392 * 119.99774 * 2 1 3 34 34 H 1.08996 * 109.47775 * 60.00042 * 3 2 1 35 35 H 1.09004 * 109.47370 * 299.99547 * 3 2 1 36 36 H 1.08996 * 109.47313 * 59.99256 * 4 3 2 37 37 H 1.09007 * 109.46843 * 299.99517 * 4 3 2 38 38 H 1.08997 * 109.47563 * 60.00285 * 8 6 5 39 39 H 1.09008 * 109.47290 * 179.97438 * 8 6 5 40 40 H 1.09005 * 109.47504 * 300.00161 * 8 6 5 41 41 H 0.96999 * 120.00044 * 0.02562 * 11 9 6 42 42 H 1.09002 * 109.46897 * 185.00130 * 14 12 11 43 43 H 1.08995 * 109.47110 * 304.99454 * 14 12 11 44 44 H 0.97002 * 119.99585 * 180.02562 * 18 17 15 45 45 H 1.08002 * 119.99647 * 359.97438 * 24 23 12 46 46 H 1.07999 * 119.99878 * 180.27270 * 25 24 23 47 47 H 1.08002 * 120.00272 * 179.82923 * 26 25 24 48 48 H 1.07994 * 120.00554 * 179.97438 * 27 26 25 49 49 H 1.08001 * 119.99841 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.4708 2.9027 -0.0013 7 1 5.9033 2.0444 0.5129 8 6 5.9791 2.9423 -1.4438 9 6 5.8743 4.1693 0.7085 10 8 5.0259 4.9006 1.1734 11 7 7.1785 4.4868 0.8310 12 6 7.5708 5.7184 1.5206 13 1 6.8342 6.4968 1.3213 14 6 8.9416 6.1718 1.0144 15 6 8.8409 6.5452 -0.4421 16 1 7.8941 6.4665 -0.9556 17 6 9.9579 6.9862 -1.1195 18 7 11.1111 7.0814 -0.4944 19 14 9.8334 7.4484 -2.9251 20 1 8.4369 7.2531 -3.3908 21 1 10.2195 8.8716 -3.0995 22 1 10.7449 6.5872 -3.7205 23 6 7.6424 5.4626 3.0040 24 6 8.1657 4.2732 3.4758 25 6 8.2355 4.0404 4.8366 26 6 7.7737 4.9931 5.7254 27 6 7.2456 6.1803 5.2535 28 6 7.1798 6.4149 3.8928 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9329 0.9287 -0.8907 37 1 3.9336 0.9286 0.8892 38 1 5.5467 3.8005 -1.9580 39 1 7.0658 3.0289 -1.4439 40 1 5.6872 2.0261 -1.9573 41 1 7.8572 3.9003 0.4620 42 1 9.2733 7.0366 1.5891 43 1 9.6593 5.3601 1.1327 44 1 11.8969 7.3921 -0.9709 45 1 8.5228 3.5272 2.7812 46 1 8.6483 3.1130 5.2052 47 1 7.8256 4.8100 6.7885 48 1 6.8844 6.9244 5.9478 49 1 6.7674 7.3425 3.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153247692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:11 Heat of formation + Delta-G solvation = -86.676898 kcal Electronic energy + Delta-G solvation = -26912.601107 eV Core-core repulsion = 23224.611316 eV Total energy + Delta-G solvation = -3687.989791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.82640 -38.75523 -37.60606 -35.29976 -34.98498 -32.82554 -31.98077 -30.59969 -30.30978 -29.00471 -28.65411 -25.19967 -24.20684 -23.14325 -22.28705 -21.95159 -21.37301 -20.26222 -19.62656 -17.17149 -16.88885 -16.50837 -16.17063 -16.08837 -15.46746 -14.90157 -14.75875 -14.58574 -14.40767 -14.07432 -13.88226 -13.42661 -13.19216 -13.06430 -12.93509 -12.56838 -12.50404 -12.31366 -12.18947 -12.11442 -11.82235 -11.57452 -11.38406 -11.30977 -11.13647 -10.95469 -10.91957 -10.84962 -10.73831 -10.58502 -10.45499 -9.79583 -9.78055 -9.30809 -9.08087 -8.54588 -8.46704 -8.40675 -8.17629 -6.10198 -4.13519 1.78389 1.80881 3.07212 3.23679 3.25335 3.34279 3.38747 4.04384 4.26364 4.39239 4.69332 4.78570 4.87588 4.93645 5.04436 5.12580 5.18441 5.24711 5.26716 5.27731 5.28221 5.38801 5.40033 5.53794 5.56163 5.59548 5.62688 5.75553 5.77713 5.88409 5.91186 5.94559 6.02998 6.10704 6.18008 6.24498 6.36188 6.44043 6.58285 6.84764 6.85953 6.90820 7.09280 7.17002 7.41056 7.48842 7.62726 7.86897 8.12947 8.25311 8.78337 8.92923 9.51713 11.00344 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.003891 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.877941 B = 7193.981114 C = 9830.571136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.119 4.119 4 C 0.059 3.941 5 O -0.357 6.357 6 C 0.073 3.927 7 H 0.081 0.919 8 C -0.171 4.171 9 C 0.512 3.488 10 O -0.529 6.529 11 N -0.698 5.698 12 C 0.186 3.814 13 H 0.087 0.913 14 C 0.024 3.976 15 C -0.519 4.519 16 H 0.059 0.941 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.071 4.071 24 C -0.109 4.109 25 C -0.125 4.125 26 C -0.135 4.135 27 C -0.122 4.122 28 C -0.108 4.108 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.400 0.600 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.261 0.739 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.417 -13.769 4.463 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.157 4.157 4 C -0.017 4.017 5 O -0.275 6.275 6 C 0.011 3.989 7 H 0.099 0.901 8 C -0.229 4.229 9 C 0.296 3.704 10 O -0.405 6.405 11 N -0.350 5.350 12 C 0.082 3.918 13 H 0.105 0.895 14 C -0.013 4.013 15 C -0.557 4.557 16 H 0.077 0.923 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.072 4.072 24 C -0.127 4.127 25 C -0.143 4.143 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.235 0.765 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.981 -13.018 4.760 18.321 hybrid contribution 0.691 -0.220 -1.177 1.383 sum -11.290 -13.238 3.583 17.764 Atomic orbital electron populations 1.21752 0.95469 1.01574 1.02115 1.21441 0.96215 0.96144 1.02101 1.21538 0.93440 0.97025 1.03661 1.22602 0.95272 0.83990 0.99883 1.88040 1.18878 1.25661 1.94946 1.21910 0.83130 0.96980 0.96870 0.90108 1.22244 1.02413 1.03238 0.94978 1.20230 0.83204 0.86982 0.79995 1.90673 1.50313 1.51524 1.48017 1.45906 1.06194 1.25300 1.57555 1.20249 1.00997 0.85618 0.84969 0.89498 1.19396 0.88181 0.97337 0.96433 1.21179 0.95362 1.44292 0.94884 0.92256 1.24989 0.95388 0.95522 0.98253 1.69972 0.99862 1.46863 1.36390 0.86556 0.78165 0.78235 0.85214 1.19651 1.20993 1.21045 1.20563 0.95849 0.93937 0.96887 1.20900 0.99492 0.97217 0.95094 1.21035 1.00701 0.99118 0.93490 1.20995 1.00679 0.94642 0.99013 1.21047 1.00303 0.97295 0.95407 1.21029 0.99346 0.99320 0.92935 0.92717 0.92565 0.92593 0.91904 0.91891 0.90939 0.91048 0.93388 0.93470 0.90984 0.90274 0.91832 0.76542 0.94713 0.95715 0.92932 0.86604 0.86752 0.86841 0.86588 0.86152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -0.93 5.93 -26.73 -0.16 -1.09 16 3 C -0.12 -1.20 5.58 -26.73 -0.15 -1.35 16 4 C 0.06 0.66 5.75 37.16 0.21 0.88 16 5 O -0.36 -5.54 9.52 -55.14 -0.52 -6.06 16 6 C 0.07 1.05 3.14 -27.89 -0.09 0.96 16 7 H 0.08 0.95 7.79 -51.93 -0.40 0.54 16 8 C -0.17 -2.20 9.42 37.15 0.35 -1.85 16 9 C 0.51 9.45 7.19 -10.98 -0.08 9.37 16 10 O -0.53 -11.96 16.16 -14.35 -0.23 -12.19 16 11 N -0.70 -12.58 3.91 -54.93 -0.21 -12.80 16 12 C 0.19 3.80 2.11 -69.08 -0.15 3.65 16 13 H 0.09 1.97 7.44 -51.92 -0.39 1.58 16 14 C 0.02 0.57 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.58 8.84 -34.44 -0.30 -13.88 16 16 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.07 -1.33 4.92 -104.62 -0.51 -1.85 16 24 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 25 C -0.13 -1.87 10.05 -39.58 -0.40 -2.26 16 26 C -0.14 -1.94 10.05 -39.58 -0.40 -2.34 16 27 C -0.12 -1.88 10.05 -39.58 -0.40 -2.27 16 28 C -0.11 -1.91 9.67 -39.58 -0.38 -2.29 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.46 7.87 -51.93 -0.41 0.05 16 37 H 0.05 0.48 8.09 -51.93 -0.42 0.06 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.97 7.56 -51.92 -0.39 0.58 16 40 H 0.06 0.66 7.87 -51.93 -0.41 0.26 16 41 H 0.40 6.44 8.02 -40.82 -0.33 6.11 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.12 1.79 7.71 -52.49 -0.40 1.39 16 46 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 48 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 49 H 0.12 2.05 8.04 -52.49 -0.42 1.63 16 LS Contribution 407.65 15.07 6.14 6.14 Total: -1.00 -32.07 407.65 -10.40 -42.47 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.61 Total: 6.49 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.67 Total: -15.25 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.52 Total: -37.44 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.76 Total: -18.25 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.07 -10.40 -42.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153247692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.207 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds