Wall clock time and date at job start Tue Mar 31 2020 13:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 C 1.53007 * 109.46841 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.46912 * 179.97438 * 4 3 2 6 6 C 1.42906 * 114.00077 * 179.97438 * 5 4 3 7 7 H 1.09002 * 109.46834 * 330.00144 * 6 5 4 8 8 C 1.52994 * 109.46816 * 89.99837 * 6 5 4 9 9 C 1.50695 * 109.47045 * 210.00000 * 6 5 4 10 10 O 1.21274 * 120.00413 * 0.27121 * 9 6 5 11 11 N 1.34784 * 119.99635 * 180.02562 * 9 6 5 12 12 C 1.46499 * 119.99971 * 179.97438 * 11 9 6 13 13 H 1.09007 * 109.46956 * 325.00197 * 12 11 9 14 14 C 1.52999 * 109.47155 * 205.00183 * 12 11 9 15 15 C 1.50699 * 109.47123 * 65.00154 * 14 12 11 16 16 H 1.08000 * 120.00148 * 359.97438 * 15 14 12 17 17 C 1.37875 * 119.99668 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00094 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00138 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46721 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47023 * 119.99588 * 19 17 15 22 22 H 1.48492 * 109.47153 * 240.00173 * 19 17 15 23 23 C 1.50701 * 109.47118 * 84.99565 * 12 11 9 24 24 C 1.38242 * 119.99723 * 39.73149 * 23 12 11 25 25 C 1.38232 * 119.99896 * 179.78464 * 24 23 12 26 26 C 1.38237 * 120.00049 * 0.43906 * 25 24 23 27 27 C 1.38239 * 120.00140 * 359.81435 * 26 25 24 28 28 C 1.38237 * 120.00201 * 219.99877 * 23 12 11 29 29 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47292 * 299.99922 * 1 2 3 31 31 H 1.08997 * 109.47392 * 60.00226 * 1 2 3 32 32 H 1.09002 * 109.47292 * 240.00077 * 2 1 3 33 33 H 1.08997 * 109.47392 * 119.99774 * 2 1 3 34 34 H 1.08996 * 109.47775 * 60.00042 * 3 2 1 35 35 H 1.09004 * 109.47370 * 299.99547 * 3 2 1 36 36 H 1.08996 * 109.47313 * 59.99256 * 4 3 2 37 37 H 1.09007 * 109.46843 * 299.99517 * 4 3 2 38 38 H 1.08997 * 109.47563 * 60.00285 * 8 6 5 39 39 H 1.09008 * 109.47290 * 179.97438 * 8 6 5 40 40 H 1.09005 * 109.47504 * 300.00161 * 8 6 5 41 41 H 0.96999 * 120.00044 * 0.02562 * 11 9 6 42 42 H 1.09002 * 109.46897 * 185.00130 * 14 12 11 43 43 H 1.08995 * 109.47110 * 304.99454 * 14 12 11 44 44 H 0.97002 * 119.99585 * 180.02562 * 18 17 15 45 45 H 1.08002 * 119.99647 * 359.97438 * 24 23 12 46 46 H 1.07999 * 119.99878 * 180.27270 * 25 24 23 47 47 H 1.08002 * 120.00272 * 179.82923 * 26 25 24 48 48 H 1.07994 * 120.00554 * 179.97438 * 27 26 25 49 49 H 1.08001 * 119.99841 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0462 2.7898 -0.0012 6 6 5.4708 2.9027 -0.0013 7 1 5.9033 2.0444 0.5129 8 6 5.9791 2.9423 -1.4438 9 6 5.8743 4.1693 0.7085 10 8 5.0259 4.9006 1.1734 11 7 7.1785 4.4868 0.8310 12 6 7.5708 5.7184 1.5206 13 1 6.8342 6.4968 1.3213 14 6 8.9416 6.1718 1.0144 15 6 8.8409 6.5452 -0.4421 16 1 7.8941 6.4665 -0.9556 17 6 9.9579 6.9862 -1.1195 18 7 11.1111 7.0814 -0.4944 19 14 9.8334 7.4484 -2.9251 20 1 8.4369 7.2531 -3.3908 21 1 10.2195 8.8716 -3.0995 22 1 10.7449 6.5872 -3.7205 23 6 7.6424 5.4626 3.0040 24 6 8.1657 4.2732 3.4758 25 6 8.2355 4.0404 4.8366 26 6 7.7737 4.9931 5.7254 27 6 7.2456 6.1803 5.2535 28 6 7.1798 6.4149 3.8928 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 3.9329 0.9287 -0.8907 37 1 3.9336 0.9286 0.8892 38 1 5.5467 3.8005 -1.9580 39 1 7.0658 3.0289 -1.4439 40 1 5.6872 2.0261 -1.9573 41 1 7.8572 3.9003 0.4620 42 1 9.2733 7.0366 1.5891 43 1 9.6593 5.3601 1.1327 44 1 11.8969 7.3921 -0.9709 45 1 8.5228 3.5272 2.7812 46 1 8.6483 3.1130 5.2052 47 1 7.8256 4.8100 6.7885 48 1 6.8844 6.9244 5.9478 49 1 6.7674 7.3425 3.5241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153247692.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:08 Heat of formation + Delta-G solvation = -103.448524 kcal Electronic energy + Delta-G solvation = -26913.328379 eV Core-core repulsion = 23224.611316 eV Total energy + Delta-G solvation = -3688.717063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.24880 -39.99445 -38.79528 -36.77652 -35.91417 -34.76304 -33.31934 -31.82050 -31.52192 -30.50879 -29.72572 -26.88791 -25.39907 -24.07284 -23.78912 -23.35478 -22.13818 -21.63621 -21.08993 -18.74783 -18.21022 -18.02571 -17.51942 -17.12729 -16.74966 -16.49611 -16.20106 -15.87733 -15.58703 -15.15737 -15.04153 -14.54095 -14.48652 -14.23253 -14.19187 -14.07197 -13.70495 -13.67586 -13.45647 -13.25017 -13.13966 -12.93013 -12.67366 -12.63330 -12.48566 -12.28251 -12.13766 -11.95238 -11.88333 -11.80951 -11.60192 -11.53253 -11.31489 -10.93736 -10.61273 -10.41797 -10.00164 -9.76168 -9.52646 -8.20295 -6.30213 0.50262 0.55320 1.38189 1.41542 1.52849 1.64960 1.98102 2.40118 2.87923 3.00921 3.14457 3.72284 3.90626 3.94206 4.00610 4.02787 4.06005 4.15501 4.20612 4.21882 4.31778 4.42055 4.43819 4.44299 4.64578 4.66992 4.71726 4.75146 4.77667 4.80312 4.91387 4.95694 5.04680 5.11775 5.19183 5.20167 5.24206 5.27293 5.35317 5.43078 5.44878 5.59584 5.60551 5.63506 5.78046 5.88702 6.15463 6.16739 6.20596 6.69325 6.82543 7.33081 7.38990 8.90600 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008697 B = 0.003891 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.877941 B = 7193.981114 C = 9830.571136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.118 4.118 4 C 0.053 3.947 5 O -0.390 6.390 6 C 0.080 3.920 7 H 0.116 0.884 8 C -0.166 4.166 9 C 0.506 3.494 10 O -0.579 6.579 11 N -0.690 5.690 12 C 0.201 3.799 13 H 0.053 0.947 14 C 0.039 3.961 15 C -0.527 4.527 16 H 0.053 0.947 17 C 0.012 3.988 18 N -0.925 5.925 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.125 4.125 28 C -0.135 4.135 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.410 0.590 42 H 0.003 0.997 43 H 0.016 0.984 44 H 0.264 0.736 45 H 0.125 0.875 46 H 0.149 0.851 47 H 0.152 0.848 48 H 0.143 0.857 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.453 -16.415 4.766 20.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.156 4.156 4 C -0.023 4.023 5 O -0.309 6.309 6 C 0.019 3.981 7 H 0.134 0.866 8 C -0.223 4.223 9 C 0.293 3.707 10 O -0.458 6.458 11 N -0.341 5.341 12 C 0.096 3.904 13 H 0.071 0.929 14 C 0.001 3.999 15 C -0.565 4.565 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.565 5.565 19 Si 0.781 3.219 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.100 4.100 24 C -0.139 4.139 25 C -0.141 4.141 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.247 0.753 42 H 0.021 0.979 43 H 0.034 0.966 44 H 0.073 0.927 45 H 0.143 0.857 46 H 0.167 0.833 47 H 0.170 0.830 48 H 0.161 0.839 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.008 -15.693 5.051 20.395 hybrid contribution 0.673 0.612 -1.181 1.490 sum -11.335 -15.081 3.870 19.259 Atomic orbital electron populations 1.21769 0.95134 1.02323 1.01828 1.21416 0.96480 0.94407 1.03004 1.21558 0.93054 0.98527 1.02459 1.22870 0.95675 0.82300 1.01464 1.88014 1.19247 1.28498 1.95145 1.21904 0.83332 0.95380 0.97468 0.86643 1.22231 1.02473 1.03803 0.93827 1.21087 0.82411 0.88004 0.79241 1.90642 1.51461 1.53521 1.50176 1.45776 1.06764 1.24434 1.57175 1.19721 0.97766 0.85951 0.86980 0.92859 1.19130 0.89926 0.95704 0.95091 1.21407 0.95043 1.44096 0.95977 0.92901 1.25753 0.95028 0.95442 1.02422 1.70077 1.00555 1.47789 1.38118 0.85549 0.78284 0.77847 0.80270 1.19365 1.20996 1.19851 1.20460 0.98377 0.95670 0.95542 1.21095 0.99591 0.96568 0.96679 1.21459 0.99675 1.00512 0.92488 1.21482 0.98700 0.93565 1.00972 1.21387 0.99767 0.98594 0.94490 1.21180 1.00576 0.99149 0.94504 0.91422 0.93069 0.92756 0.90714 0.91193 0.92632 0.91849 0.91158 0.92313 0.93385 0.89759 0.88641 0.75348 0.97878 0.96585 0.92715 0.85739 0.83332 0.83043 0.83949 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.55 5.93 30.59 0.18 -1.37 16 3 C -0.12 -2.28 5.58 30.60 0.17 -2.11 16 4 C 0.05 1.08 5.75 71.98 0.41 1.50 16 5 O -0.39 -11.86 9.52 -129.94 -1.24 -13.09 16 6 C 0.08 2.23 3.14 29.84 0.09 2.32 16 7 H 0.12 2.39 7.79 -2.39 -0.02 2.38 16 8 C -0.17 -4.01 9.42 71.98 0.68 -3.33 16 9 C 0.51 19.12 7.19 87.65 0.63 19.75 16 10 O -0.58 -27.42 16.16 16.02 0.26 -27.16 16 11 N -0.69 -25.59 3.91 -446.09 -1.75 -27.33 16 12 C 0.20 8.71 2.11 44.25 0.09 8.80 16 13 H 0.05 2.63 7.44 -2.38 -0.02 2.61 16 14 C 0.04 1.95 4.50 29.85 0.13 2.08 16 15 C -0.53 -28.49 8.84 25.60 0.23 -28.27 16 16 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 17 C 0.01 0.67 5.46 84.65 0.46 1.13 16 18 N -0.93 -53.60 13.29 21.45 0.28 -53.32 16 19 Si 0.95 43.21 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.10 -3.87 4.92 -19.86 -0.10 -3.96 16 24 C -0.12 -4.01 9.33 22.27 0.21 -3.81 16 25 C -0.12 -3.36 10.05 22.27 0.22 -3.14 16 26 C -0.13 -3.34 10.05 22.27 0.22 -3.12 16 27 C -0.12 -3.68 10.05 22.27 0.22 -3.45 16 28 C -0.14 -5.00 9.67 22.27 0.22 -4.78 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.07 1.12 7.87 -2.39 -0.02 1.11 16 37 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.94 7.56 -2.38 -0.02 1.92 16 40 H 0.09 1.70 7.87 -2.38 -0.02 1.68 16 41 H 0.41 13.29 8.02 -92.71 -0.74 12.55 16 42 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 45 H 0.12 3.76 7.71 -2.91 -0.02 3.74 16 46 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 48 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 49 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -72.56 407.65 4.54 -68.02 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.16 Total: 30.62 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 4.79 Total: -22.97 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.46 Total: -80.65 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.98 Total: -40.25 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.56 4.54 -68.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153247692.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.430 kcal (2) G-P(sol) polarization free energy of solvation -72.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds