Wall clock time and date at job start Tue Mar 31 2020 13:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47014 * 2 1 4 4 C 1.53001 * 109.47154 * 119.99646 * 2 1 3 5 5 O 1.42905 * 109.47209 * 175.00015 * 4 2 1 6 6 C 1.35897 * 116.99869 * 180.02562 * 5 4 2 7 7 C 1.38738 * 120.05227 * 180.02562 * 6 5 4 8 8 C 1.38141 * 119.94391 * 180.02562 * 7 6 5 9 9 C 1.38267 * 120.05384 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.94399 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.47064 * 89.99908 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46983 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.47452 * 179.97438 * 15 14 13 17 17 C 1.50695 * 109.47088 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00531 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99882 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99989 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00260 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47107 * 59.99828 * 21 19 17 23 23 H 1.48500 * 109.47454 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47261 * 299.99653 * 21 19 17 25 25 C 1.38270 * 120.11265 * 0.25255 * 9 8 7 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 9 8 27 27 H 1.08997 * 109.47186 * 299.99951 * 1 2 3 28 28 H 1.08995 * 109.47134 * 60.00155 * 1 2 3 29 29 H 1.08996 * 109.46784 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47186 * 240.00049 * 2 1 3 31 31 H 1.08997 * 109.47104 * 59.99998 * 3 2 1 32 32 H 1.09000 * 109.47104 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.46749 * 299.99821 * 3 2 1 34 34 H 1.09003 * 109.46760 * 55.00672 * 4 2 1 35 35 H 1.08994 * 109.47396 * 295.00221 * 4 2 1 36 36 H 1.07996 * 120.02821 * 359.97438 * 7 6 5 37 37 H 1.07993 * 119.97516 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47152 * 330.00001 * 10 9 8 39 39 H 1.09001 * 109.46980 * 210.00101 * 10 9 8 40 40 H 0.96995 * 120.00011 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.47487 * 300.00114 * 14 13 11 42 42 H 1.09002 * 109.47182 * 60.00342 * 14 13 11 43 43 H 1.09001 * 109.47289 * 299.99909 * 15 14 13 44 44 H 1.09002 * 109.47153 * 59.99993 * 15 14 13 45 45 H 1.08998 * 109.47061 * 300.00668 * 16 15 14 46 46 H 1.09002 * 109.46668 * 60.00355 * 16 15 14 47 47 H 0.96996 * 119.99885 * 180.02562 * 20 19 17 48 48 H 1.07999 * 119.97019 * 179.70188 * 25 9 8 49 49 H 1.07998 * 120.03323 * 180.24999 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 8 3.4642 -0.8237 1.1921 6 6 4.0804 -1.4431 2.2329 7 6 5.4613 -1.5772 2.2428 8 6 6.0854 -2.2077 3.3017 9 6 5.3349 -2.7054 4.3509 10 6 6.0182 -3.3933 5.5046 11 6 6.3621 -2.3771 6.5630 12 8 6.0797 -1.2094 6.3970 13 7 6.9826 -2.7662 7.6945 14 6 7.3164 -1.7784 8.7235 15 6 8.0102 -2.4767 9.8948 16 6 8.3595 -1.4450 10.9693 17 6 9.0423 -2.1330 12.1232 18 1 9.2101 -3.1995 12.0934 19 6 9.4520 -1.4011 13.2175 20 7 9.2473 -0.1024 13.2541 21 14 10.2990 -2.2537 14.6475 22 1 11.5428 -2.9078 14.1673 23 1 10.6379 -1.2524 15.6905 24 1 9.3904 -3.2786 15.2213 25 6 3.9581 -2.5781 4.3408 26 6 3.3298 -1.9431 3.2871 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1370 36 1 6.0478 -1.1897 1.4229 37 1 7.1602 -2.3119 3.3101 38 1 6.9309 -3.8738 5.1522 39 1 5.3511 -4.1452 5.9260 40 1 7.2082 -3.7001 7.8273 41 1 7.9837 -1.0263 8.3025 42 1 6.4036 -1.2979 9.0757 43 1 7.3433 -3.2290 10.3160 44 1 8.9231 -2.9568 9.5423 45 1 9.0265 -0.6930 10.5479 46 1 7.4468 -0.9645 11.3219 47 1 9.5358 0.4125 14.0237 48 1 3.3738 -2.9720 5.1592 49 1 2.2547 -1.8403 3.2814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170950325.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:59 Heat of formation + Delta-G solvation = -107.105320 kcal Electronic energy + Delta-G solvation = -25068.999971 eV Core-core repulsion = 21380.124337 eV Total energy + Delta-G solvation = -3688.875634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.32135 -40.57493 -38.74355 -36.92386 -36.20422 -35.15940 -33.41622 -32.63499 -31.98208 -29.19702 -28.08652 -28.02668 -26.99748 -24.86118 -23.76176 -22.56265 -22.29086 -21.19119 -20.98113 -19.17428 -18.55310 -17.89003 -17.36872 -17.06348 -16.96211 -16.59751 -16.48678 -15.94737 -15.62847 -15.29172 -15.20819 -14.90892 -14.72906 -14.37624 -14.23347 -14.04046 -13.75695 -13.67651 -13.49333 -13.26703 -13.00597 -12.79739 -12.66180 -12.57444 -12.52175 -12.37706 -12.17202 -12.04730 -11.92820 -11.65806 -11.59149 -11.55393 -11.50118 -11.24960 -10.81059 -10.54501 -10.04831 -9.93093 -9.04340 -8.18963 -6.30894 0.40797 0.42991 1.42213 1.45332 1.53200 1.71688 2.21408 2.27910 2.43583 2.87373 3.14659 3.72302 3.76759 3.82877 3.91510 3.96119 4.07719 4.10061 4.21605 4.26181 4.28827 4.39090 4.43473 4.49148 4.56314 4.61173 4.65143 4.72516 4.75656 4.81284 4.95354 4.95856 4.98305 5.02707 5.09725 5.16850 5.17813 5.29346 5.34916 5.36797 5.40342 5.47229 5.54962 5.65621 5.70898 5.84249 5.84420 6.22320 6.46458 6.66491 6.86737 7.35328 7.38984 8.92863 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029847 B = 0.001595 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.901860 B =17549.155142 C =17959.031932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.057 3.943 5 O -0.328 6.328 6 C 0.114 3.886 7 C -0.167 4.167 8 C -0.075 4.075 9 C -0.115 4.115 10 C -0.087 4.087 11 C 0.505 3.495 12 O -0.588 6.588 13 N -0.716 5.716 14 C 0.130 3.870 15 C -0.101 4.101 16 C 0.022 3.978 17 C -0.543 4.543 18 H 0.068 0.932 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.265 1.265 25 C -0.076 4.076 26 C -0.215 4.215 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.417 0.583 41 H 0.045 0.955 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.069 0.931 45 H -0.010 1.010 46 H -0.010 1.010 47 H 0.263 0.737 48 H 0.137 0.863 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.676 -8.397 -28.196 33.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.018 4.018 5 O -0.242 6.242 6 C 0.069 3.931 7 C -0.185 4.185 8 C -0.093 4.093 9 C -0.116 4.116 10 C -0.126 4.126 11 C 0.293 3.707 12 O -0.468 6.468 13 N -0.369 5.369 14 C 0.006 3.994 15 C -0.139 4.139 16 C -0.016 4.016 17 C -0.581 4.581 18 H 0.086 0.914 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.212 1.212 24 H -0.190 1.190 25 C -0.094 4.094 26 C -0.233 4.233 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.255 0.745 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.071 0.929 48 H 0.155 0.845 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.778 -7.334 -28.380 33.289 hybrid contribution 0.469 -0.010 1.250 1.335 sum -15.308 -7.345 -27.131 32.006 Atomic orbital electron populations 1.21771 0.92285 1.02886 1.03085 1.21145 0.96940 0.96395 0.96572 1.21828 1.00899 0.95502 1.02305 1.23124 0.77547 1.01168 0.99952 1.86020 1.23057 1.73588 1.41528 1.19181 0.92677 0.93553 0.87696 1.20584 0.91783 1.04827 1.01350 1.21057 1.00470 0.95361 0.92375 1.19457 0.93805 1.02336 0.96012 1.20667 1.04275 0.96419 0.91255 1.21377 0.76492 0.89868 0.82984 1.90713 1.54921 1.21516 1.79616 1.46000 1.60233 1.12535 1.18118 1.21172 0.98533 0.91556 0.88176 1.21592 0.99885 0.98605 0.93812 1.18956 0.94863 0.94347 0.93393 1.21666 1.38306 0.95067 1.03019 0.91408 1.26039 0.96808 0.95487 1.01779 1.70114 1.48416 1.07579 1.31448 0.85457 0.79156 0.78097 0.78060 1.18984 1.21235 1.18962 1.21062 0.94255 0.96717 0.97360 1.21388 1.00873 1.05147 0.95907 0.92143 0.90828 0.91585 0.90218 0.92815 0.93528 0.91273 0.90926 0.92045 0.84630 0.84094 0.85012 0.85050 0.74538 0.93689 0.93672 0.91233 0.91246 0.99127 0.99127 0.92855 0.84493 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 71.98 0.66 -0.45 16 2 C -0.09 -1.08 3.16 -10.79 -0.03 -1.12 16 3 C -0.15 -1.94 9.09 71.98 0.65 -1.28 16 4 C 0.06 0.84 4.12 71.98 0.30 1.14 16 5 O -0.33 -6.94 9.67 -92.39 -0.89 -7.83 16 6 C 0.11 2.60 6.69 22.51 0.15 2.75 16 7 C -0.17 -3.75 9.99 22.37 0.22 -3.52 16 8 C -0.07 -1.60 9.69 22.25 0.22 -1.39 16 9 C -0.12 -2.45 4.37 -19.85 -0.09 -2.54 16 10 C -0.09 -1.45 5.83 29.10 0.17 -1.28 16 11 C 0.50 13.71 7.82 87.66 0.69 14.39 16 12 O -0.59 -22.33 16.03 -3.03 -0.05 -22.38 16 13 N -0.72 -18.56 5.56 -463.06 -2.57 -21.14 16 14 C 0.13 4.58 5.67 86.38 0.49 5.07 16 15 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 16 C 0.02 1.16 4.97 29.85 0.15 1.30 16 17 C -0.54 -30.25 9.11 25.60 0.23 -30.02 16 18 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -57.36 13.29 21.45 0.28 -57.07 16 21 Si 0.97 43.65 29.54 68.60 2.03 45.67 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.08 -1.59 9.69 22.25 0.22 -1.37 16 26 C -0.21 -4.46 9.04 22.37 0.20 -4.26 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.76 7.82 -2.39 -0.02 0.74 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 35 H 0.06 0.91 7.67 -2.39 -0.02 0.89 16 36 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 37 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.13 1.43 8.08 -2.39 -0.02 1.41 16 39 H 0.13 1.42 8.08 -2.39 -0.02 1.40 16 40 H 0.42 7.59 8.47 -92.71 -0.79 6.81 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 47 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 48 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 49 H 0.14 2.30 6.30 -2.91 -0.02 2.28 16 Total: -1.00 -75.40 406.59 3.77 -71.63 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: 0.13 Total: 17.13 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 4.85 Total: -26.02 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.29 Total: -78.21 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.94 Total: -30.21 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.40 3.77 -71.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170950325.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.478 kcal (2) G-P(sol) polarization free energy of solvation -75.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds