Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46774 * 2 1 4 4 H 1.09000 * 109.46920 * 304.99807 * 3 2 1 5 5 C 1.50704 * 109.46932 * 184.99798 * 3 2 1 6 6 H 1.07995 * 120.00022 * 239.99997 * 5 3 2 7 7 C 1.37882 * 119.99721 * 59.99816 * 5 3 2 8 8 N 1.31511 * 120.00211 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99632 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46917 * 90.00331 * 9 7 5 11 11 H 1.48500 * 109.47111 * 210.00122 * 9 7 5 12 12 H 1.48500 * 109.47331 * 330.00591 * 9 7 5 13 13 N 1.46497 * 109.47168 * 64.99969 * 3 2 1 14 14 C 1.34774 * 119.99958 * 274.99952 * 13 3 2 15 15 O 1.21279 * 120.00288 * 359.97438 * 14 13 3 16 16 C 1.50700 * 120.00256 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47418 * 173.78327 * 16 14 13 18 18 H 1.09002 * 109.47227 * 53.45241 * 17 16 14 19 19 C 1.53001 * 109.47161 * 293.44661 * 17 16 14 20 20 C 1.53003 * 109.46923 * 175.62357 * 19 17 16 21 21 C 1.50696 * 109.47144 * 173.45000 * 17 16 14 22 22 C 1.38271 * 119.94391 * 59.72656 * 21 17 16 23 23 C 1.38152 * 120.05310 * 179.72837 * 22 21 17 24 24 C 1.38732 * 119.94158 * 0.54376 * 23 22 21 25 25 O 1.35905 * 120.05405 * 179.75522 * 24 23 22 26 26 C 1.42905 * 116.99686 * 359.97086 * 25 24 23 27 27 C 1.38726 * 119.89433 * 359.73017 * 24 23 22 28 28 C 1.38152 * 119.93946 * 359.97438 * 27 24 23 29 29 H 1.09008 * 109.46819 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47258 * 299.99989 * 1 2 3 31 31 H 1.09004 * 109.47422 * 60.00524 * 1 2 3 32 32 H 1.08997 * 109.47258 * 240.00011 * 2 1 3 33 33 H 1.09000 * 109.47062 * 119.99806 * 2 1 3 34 34 H 0.97003 * 120.00043 * 179.97438 * 8 7 5 35 35 H 0.97006 * 120.00135 * 95.00076 * 13 3 2 36 36 H 1.08998 * 109.47105 * 53.77820 * 16 14 13 37 37 H 1.09006 * 109.46941 * 293.78881 * 16 14 13 38 38 H 1.08990 * 109.47327 * 295.62783 * 19 17 16 39 39 H 1.09008 * 109.46508 * 55.62986 * 19 17 16 40 40 H 1.09007 * 109.46654 * 185.06267 * 20 19 17 41 41 H 1.08996 * 109.47107 * 305.05630 * 20 19 17 42 42 H 1.08997 * 109.46787 * 65.06323 * 20 19 17 43 43 H 1.07998 * 119.97351 * 0.02562 * 22 21 17 44 44 H 1.07998 * 120.02613 * 180.27814 * 23 22 21 45 45 H 1.09004 * 109.46871 * 60.00937 * 26 25 24 46 46 H 1.09002 * 109.47006 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.47298 * 300.00582 * 26 25 24 48 48 H 1.07999 * 120.03338 * 179.97438 * 27 24 23 49 49 H 1.08001 * 119.96846 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5548 -0.3500 -0.7601 11 1 6.3830 0.9224 -2.8172 12 1 6.5569 2.0739 -0.6900 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6643 1.3669 15 8 -0.3394 2.6326 0.4341 16 6 0.0364 3.3386 2.6544 17 6 -1.3172 4.0279 2.4714 18 1 -2.0423 3.3091 2.0898 19 6 -1.1716 5.1821 1.4776 20 6 -2.5448 5.8020 1.2113 21 6 -1.7913 4.5638 3.7976 22 6 -1.0271 5.4924 4.4798 23 6 -1.4623 5.9895 5.6931 24 6 -2.6618 5.5476 6.2323 25 8 -3.0897 6.0313 7.4281 26 6 -2.2537 6.9925 8.0757 27 6 -3.4240 4.6117 5.5486 28 6 -2.9874 4.1223 4.3327 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8293 -0.0604 -2.9502 35 1 2.2718 2.1232 1.9978 36 1 0.7883 4.0802 2.9240 37 1 -0.0393 2.5935 3.4464 38 1 -0.5061 5.9382 1.8939 39 1 -0.7551 4.8063 0.5429 40 1 -2.4554 6.5640 0.4369 41 1 -3.2354 5.0266 0.8799 42 1 -2.9217 6.2571 2.1272 43 1 -0.0915 5.8331 4.0616 44 1 -0.8672 6.7181 6.2235 45 1 -2.1366 7.8644 7.4321 46 1 -2.7104 7.2949 9.0181 47 1 -1.2764 6.5511 8.2710 48 1 -4.3580 4.2658 5.9664 49 1 -3.5806 3.3939 3.7998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183902932.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = -92.517182 kcal Electronic energy + Delta-G solvation = -27031.227211 eV Core-core repulsion = 23342.984166 eV Total energy + Delta-G solvation = -3688.243045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30344 -40.62157 -38.96081 -37.03655 -35.79763 -34.24119 -32.89334 -31.98292 -31.52730 -30.32284 -28.84354 -27.97226 -25.64649 -24.64393 -23.93507 -22.95724 -22.09472 -21.08933 -20.61678 -19.07849 -18.80471 -17.66756 -17.17271 -16.93092 -16.58859 -16.41725 -16.08648 -15.99180 -15.49281 -15.18883 -14.91366 -14.58521 -14.50913 -14.39763 -14.24823 -14.02498 -13.57993 -13.40496 -13.27978 -13.15116 -12.90685 -12.78759 -12.72464 -12.64958 -12.30182 -12.15354 -12.14771 -11.99942 -11.94409 -11.60887 -11.58426 -11.45166 -11.35638 -11.01234 -10.55487 -10.38620 -9.89033 -9.51195 -8.97609 -8.14175 -6.31098 0.45327 0.50007 1.44840 1.45363 1.55616 2.00686 2.38454 2.43937 2.72912 2.88777 3.15158 3.76775 3.83195 3.99420 4.06323 4.16390 4.33646 4.36713 4.39292 4.42826 4.50041 4.52024 4.58553 4.59789 4.60898 4.68618 4.75720 4.78309 4.79285 4.89529 5.00627 5.09659 5.10885 5.17885 5.23695 5.30162 5.33857 5.42546 5.43781 5.47708 5.55032 5.59790 5.70552 5.81659 5.84070 5.88188 5.99192 6.21325 6.50760 6.78439 7.11427 7.36887 7.72124 8.90900 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002596 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.167511 B =10781.528889 C =11247.413824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.711 5.711 14 C 0.497 3.503 15 O -0.581 6.581 16 C -0.124 4.124 17 C -0.019 4.019 18 H 0.069 0.931 19 C -0.116 4.116 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.077 4.077 23 C -0.205 4.205 24 C 0.108 3.892 25 O -0.338 6.338 26 C 0.019 3.981 27 C -0.160 4.160 28 C -0.082 4.082 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.058 0.942 43 H 0.137 0.863 44 H 0.146 0.854 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.063 0.937 48 H 0.135 0.865 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 12.260 19.505 24.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.584 4.584 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.360 5.360 14 C 0.285 3.715 15 O -0.462 6.462 16 C -0.164 4.164 17 C -0.038 4.038 18 H 0.088 0.912 19 C -0.153 4.153 20 C -0.197 4.197 21 C -0.107 4.107 22 C -0.095 4.095 23 C -0.224 4.224 24 C 0.063 3.937 25 O -0.252 6.252 26 C -0.075 4.075 27 C -0.179 4.179 28 C -0.100 4.100 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.082 0.918 48 H 0.153 0.847 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.319 12.107 18.777 24.610 hybrid contribution 1.338 -0.182 -0.401 1.408 sum -8.981 11.925 18.377 23.676 Atomic orbital electron populations 1.21657 0.96878 0.98945 1.00349 1.21783 0.93838 0.99396 1.01023 1.18292 0.93368 0.89036 0.81733 0.98497 1.21605 0.91681 1.38642 1.06511 0.91163 1.25764 1.03151 0.94527 0.95123 1.70053 1.36957 1.38511 1.09866 0.85411 0.79392 0.78835 0.77086 1.19788 1.21369 1.18871 1.46313 1.15958 1.56419 1.17325 1.21196 0.81502 0.78353 0.90462 1.90644 1.52190 1.60857 1.42499 1.21763 0.98887 1.01197 0.94543 1.19741 0.95496 0.96593 0.91937 0.91245 1.21591 0.98222 0.96779 0.98741 1.21651 0.96592 1.00194 1.01262 1.19681 0.95799 0.99032 0.96195 1.20980 0.99601 0.95224 0.93723 1.21418 0.97264 1.04997 0.98696 1.19211 0.93737 0.94766 0.86015 1.86037 1.49385 1.58087 1.31709 1.23309 0.95500 0.90566 0.98161 1.20561 1.01635 0.99618 0.96076 1.21031 0.95657 0.98850 0.94447 0.93921 0.93486 0.95600 0.91298 0.94308 0.92713 0.76410 0.87334 0.87573 0.91296 0.93361 0.92853 0.93547 0.92253 0.84525 0.83599 0.91849 0.86519 0.91837 0.84667 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.51 71.98 0.61 -4.82 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.18 2.24 44.25 0.10 14.27 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.48 16 6 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.01 0.77 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.49 11.29 21.45 0.24 -52.25 16 9 Si 0.97 42.01 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -28.39 5.02 -446.10 -2.24 -30.63 16 14 C 0.50 18.40 5.96 87.66 0.52 18.92 16 15 O -0.58 -25.98 11.48 -3.03 -0.03 -26.02 16 16 C -0.12 -3.17 4.87 29.85 0.15 -3.03 16 17 C -0.02 -0.47 1.68 -11.54 -0.02 -0.49 16 18 H 0.07 2.00 7.54 -2.39 -0.02 1.98 16 19 C -0.12 -3.07 5.10 30.60 0.16 -2.91 16 20 C -0.14 -3.33 9.63 71.98 0.69 -2.63 16 21 C -0.11 -2.25 3.82 -19.85 -0.08 -2.33 16 22 C -0.08 -1.44 8.72 22.26 0.19 -1.24 16 23 C -0.21 -3.56 9.04 22.37 0.20 -3.35 16 24 C 0.11 2.12 6.69 22.50 0.15 2.27 16 25 O -0.34 -6.20 10.50 -92.48 -0.97 -7.17 16 26 C 0.02 0.19 9.81 113.37 1.11 1.30 16 27 C -0.16 -3.21 9.99 22.37 0.22 -2.99 16 28 C -0.08 -1.68 9.66 22.26 0.22 -1.47 16 29 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 31 H 0.02 1.25 7.85 -2.38 -0.02 1.23 16 32 H 0.07 3.82 5.95 -2.39 -0.01 3.81 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.40 13.58 8.54 -92.70 -0.79 12.78 16 36 H 0.11 2.29 7.61 -2.39 -0.02 2.27 16 37 H 0.11 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.07 1.58 7.25 -2.39 -0.02 1.57 16 39 H 0.05 1.64 6.25 -2.38 -0.01 1.62 16 40 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.28 7.53 -2.39 -0.02 1.26 16 43 H 0.14 2.16 7.15 -2.91 -0.02 2.14 16 44 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 45 H 0.06 0.52 7.66 -2.39 -0.02 0.51 16 46 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 48 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 49 H 0.13 2.51 7.94 -2.91 -0.02 2.48 16 Total: -1.00 -66.71 385.76 4.24 -62.47 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.15 Total: 31.14 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 5.07 Total: -21.58 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.00 Total: -82.88 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.01 Total: -33.19 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -66.71 4.24 -62.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183902932.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.042 kcal (2) G-P(sol) polarization free energy of solvation -66.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds