Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.09001 * 109.47485 * 54.99659 * 3 2 1 5 5 C 1.53001 * 109.47227 * 294.99814 * 3 2 1 6 6 C 1.50700 * 109.47104 * 174.99547 * 3 2 1 7 7 C 1.38171 * 120.02618 * 60.02839 * 6 3 2 8 8 C 1.38241 * 120.05600 * 179.97438 * 7 6 3 9 9 C 1.38287 * 120.11294 * 0.02562 * 8 7 6 10 10 C 1.38126 * 120.05467 * 359.68817 * 9 8 7 11 11 C 1.38708 * 120.03189 * 239.99831 * 6 3 2 12 12 O 1.35896 * 120.05456 * 0.02670 * 11 6 3 13 13 C 1.42904 * 117.00192 * 179.97438 * 12 11 6 14 14 C 1.50705 * 109.47077 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99748 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99510 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99798 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47068 * 34.99973 * 17 16 14 19 19 C 1.50699 * 109.47262 * 154.99826 * 17 16 14 20 20 H 1.08000 * 119.99792 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99902 * 179.97438 * 19 17 16 22 22 N 1.31515 * 120.00126 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99745 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47438 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.47045 * 120.00577 * 23 21 19 26 26 H 1.48501 * 109.46950 * 240.00369 * 23 21 19 27 27 C 1.52997 * 109.47212 * 274.99913 * 17 16 14 28 28 C 1.53004 * 109.47236 * 64.99775 * 27 17 16 29 29 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47339 * 299.99994 * 1 2 3 31 31 H 1.09003 * 109.46656 * 60.00266 * 1 2 3 32 32 H 1.09001 * 109.47515 * 239.99659 * 2 1 3 33 33 H 1.09003 * 109.46656 * 119.99734 * 2 1 3 34 34 H 1.09001 * 109.47220 * 59.99963 * 5 3 2 35 35 H 1.09004 * 109.47299 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.46780 * 299.99732 * 5 3 2 37 37 H 1.07998 * 119.97095 * 359.97438 * 7 6 3 38 38 H 1.08006 * 119.94635 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.97378 * 179.97438 * 9 8 7 40 40 H 1.08000 * 120.03041 * 180.31551 * 10 9 8 41 41 H 1.08995 * 109.46784 * 59.99689 * 13 12 11 42 42 H 1.09000 * 109.46545 * 299.99796 * 13 12 11 43 43 H 0.97005 * 120.00963 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00073 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47630 * 184.99905 * 27 17 16 46 46 H 1.09004 * 109.47346 * 305.00035 * 27 17 16 47 47 H 1.09001 * 109.46917 * 300.00567 * 28 27 17 48 48 H 1.09004 * 109.46741 * 59.99889 * 28 27 17 49 49 H 1.09000 * 109.47403 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 6 4.3155 0.8176 -0.8342 8 6 5.6933 0.8194 -0.7214 9 6 6.3008 1.4475 0.3504 10 6 5.5323 2.0805 1.3077 11 6 4.1489 2.0756 1.1996 12 8 3.3903 2.6927 2.1432 13 6 4.0831 3.3218 3.2232 14 6 3.0854 3.9478 4.1633 15 8 1.8980 3.8639 3.9310 16 7 3.5128 4.6017 5.2615 17 6 2.5429 5.2108 6.1751 18 1 1.6478 4.5905 6.2211 19 6 3.1489 5.3208 7.5505 20 1 4.1559 4.9723 7.7264 21 6 2.4181 5.8674 8.5841 22 7 1.1920 6.2922 8.3698 23 14 3.1695 6.0044 10.2888 24 1 4.5508 5.4598 10.2663 25 1 3.2069 7.4308 10.7000 26 1 2.3482 5.2320 11.2553 27 6 2.1713 6.6058 5.6685 28 6 1.4438 6.4845 4.3280 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5490 2.1252 -1.3970 35 1 1.9990 3.1541 -1.3076 36 1 2.0700 1.5875 -2.1491 37 1 3.8433 0.3260 -1.6719 38 1 6.2962 0.3286 -1.4711 39 1 7.3774 1.4471 0.4365 40 1 6.0074 2.5753 2.1419 41 1 4.7456 4.0927 2.8298 42 1 4.6706 2.5774 3.7605 43 1 4.4625 4.6691 5.4471 44 1 0.6778 6.6764 9.0970 45 1 1.5192 7.0938 6.3929 46 1 3.0770 7.1982 5.5380 47 1 2.0959 5.9965 3.6036 48 1 0.5381 5.8921 4.4585 49 1 1.1794 7.4784 3.9668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183959144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -73.387301 kcal Electronic energy + Delta-G solvation = -27126.492775 eV Core-core repulsion = 23439.079264 eV Total energy + Delta-G solvation = -3687.413511 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50603 -39.05354 -37.45025 -36.06675 -35.02416 -32.47282 -31.35175 -31.06064 -30.16583 -28.92826 -28.06703 -26.55530 -24.86103 -23.25343 -22.68607 -21.95226 -20.47958 -19.79275 -19.38346 -18.16017 -17.34628 -16.18796 -16.17013 -15.86429 -15.46078 -15.23336 -14.68835 -14.55098 -14.35400 -14.21206 -14.08257 -13.54174 -13.32916 -12.94204 -12.71382 -12.52646 -12.45519 -12.17390 -11.94668 -11.91350 -11.75155 -11.54934 -11.40060 -11.28976 -11.00381 -10.98170 -10.84973 -10.78462 -10.56525 -10.43451 -10.33454 -10.22148 -9.65571 -9.10411 -9.02515 -8.92477 -8.53986 -8.16122 -7.90102 -6.15983 -4.25760 1.22678 1.37518 2.93568 3.21201 3.25288 3.29734 3.32022 3.66772 4.17738 4.36428 4.54002 4.71531 4.86635 4.95730 5.00051 5.03963 5.15222 5.17150 5.22544 5.26062 5.37151 5.40993 5.44900 5.53807 5.57766 5.58779 5.85996 5.91965 5.95557 5.98323 6.11091 6.21162 6.26782 6.35579 6.37438 6.42060 6.43716 6.57679 6.63575 6.70106 7.01034 7.16016 7.31076 7.36935 7.39659 7.58683 7.68995 7.85699 8.13916 8.57008 8.72963 9.03699 9.41515 10.89364 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002840 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.080596 B = 9856.211764 C =10658.375936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.052 4.052 4 H 0.093 0.907 5 C -0.141 4.141 6 C -0.104 4.104 7 C -0.079 4.079 8 C -0.162 4.162 9 C -0.085 4.085 10 C -0.210 4.210 11 C 0.135 3.865 12 O -0.283 6.283 13 C 0.038 3.962 14 C 0.503 3.497 15 O -0.524 6.524 16 N -0.705 5.705 17 C 0.272 3.728 18 H 0.051 0.949 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.067 3.933 22 N -0.881 5.881 23 Si 0.902 3.098 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.128 4.128 28 C -0.138 4.138 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.389 0.611 44 H 0.264 0.736 45 H 0.100 0.900 46 H 0.031 0.969 47 H 0.037 0.963 48 H 0.050 0.950 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.594 -9.697 -17.669 21.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.071 4.071 4 H 0.112 0.888 5 C -0.198 4.198 6 C -0.105 4.105 7 C -0.097 4.097 8 C -0.180 4.180 9 C -0.103 4.103 10 C -0.229 4.229 11 C 0.089 3.911 12 O -0.194 6.194 13 C -0.041 4.041 14 C 0.286 3.714 15 O -0.401 6.401 16 N -0.354 5.354 17 C 0.171 3.829 18 H 0.068 0.932 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.518 5.518 23 Si 0.729 3.271 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.167 4.167 28 C -0.195 4.195 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.221 0.779 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.325 -9.635 -17.697 21.119 hybrid contribution 1.293 0.231 1.148 1.744 sum 7.617 -9.404 -16.549 20.502 Atomic orbital electron populations 1.21833 0.95711 1.01375 1.02266 1.21546 0.95896 0.95726 1.01725 1.20078 0.90276 0.96878 0.99848 0.88830 1.21865 1.01293 1.00455 0.96225 1.19242 0.96169 1.01051 0.94020 1.20804 0.93360 0.97817 0.97749 1.20991 0.94682 1.02990 0.99341 1.20895 0.99513 0.96253 0.93686 1.21282 0.92640 1.06384 1.02600 1.18952 0.89641 0.93106 0.89386 1.86180 1.33863 1.66841 1.32565 1.22665 0.95488 0.97774 0.88178 1.19765 0.89206 0.80032 0.82429 1.90717 1.16682 1.59116 1.73583 1.46394 1.11239 1.54280 1.23536 1.18831 0.88327 0.90157 0.85566 0.93164 1.21250 1.00994 1.41970 0.93134 0.91981 1.24889 0.94798 0.94835 0.99155 1.69902 1.09234 1.40251 1.32431 0.86393 0.79220 0.77800 0.83683 1.19742 1.20860 1.20856 1.21949 0.99280 0.99550 0.95907 1.21846 1.00830 0.98351 0.98497 0.92998 0.92262 0.92566 0.92297 0.92012 0.92147 0.92686 0.92955 0.85684 0.86210 0.86028 0.85414 0.89732 0.89650 0.77892 0.92551 0.88179 0.94978 0.94352 0.93089 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.11 -1.18 5.14 -26.73 -0.14 -1.32 16 3 C -0.05 -0.64 2.52 -91.77 -0.23 -0.87 16 4 H 0.09 1.42 6.99 -51.93 -0.36 1.05 16 5 C -0.14 -1.47 8.76 37.16 0.33 -1.15 16 6 C -0.10 -1.30 4.79 -104.47 -0.50 -1.80 16 7 C -0.08 -0.82 8.76 -39.60 -0.35 -1.17 16 8 C -0.16 -1.55 10.04 -39.56 -0.40 -1.95 16 9 C -0.09 -0.85 10.04 -39.60 -0.40 -1.25 16 10 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 11 C 0.14 1.86 6.66 -39.22 -0.26 1.60 16 12 O -0.28 -4.57 8.44 -39.32 -0.33 -4.90 16 13 C 0.04 0.55 5.22 36.01 0.19 0.74 16 14 C 0.50 9.77 6.48 -10.99 -0.07 9.69 16 15 O -0.52 -12.35 13.64 -14.35 -0.20 -12.54 16 16 N -0.70 -13.99 5.02 -54.93 -0.28 -14.26 16 17 C 0.27 6.70 2.24 -69.08 -0.15 6.54 16 18 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 19 C -0.54 -13.79 8.73 -34.44 -0.30 -14.09 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 22 N -0.88 -24.34 11.29 55.43 0.63 -23.72 16 23 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.13 -3.07 5.45 -26.73 -0.15 -3.21 16 28 C -0.14 -3.08 8.52 37.16 0.32 -2.76 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 32 H 0.06 0.53 7.57 -51.93 -0.39 0.14 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.59 6.57 -51.93 -0.34 0.24 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.46 7.39 -51.93 -0.38 0.08 16 37 H 0.13 1.04 7.16 -52.49 -0.38 0.66 16 38 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 41 H 0.08 1.02 7.65 -51.93 -0.40 0.62 16 42 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 43 H 0.39 6.49 8.54 -40.82 -0.35 6.14 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 46 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 48 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -30.37 387.04 -9.57 -39.94 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -8.00 Total: 7.69 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.21 Total: -13.30 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.35 Total: -37.98 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.53 Total: -17.44 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.37 -9.57 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183959144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.444 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds