Wall clock time and date at job start Tue Mar 31 2020 14:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47055 * 2 1 4 4 H 1.09001 * 109.47485 * 54.99659 * 3 2 1 5 5 C 1.53001 * 109.47227 * 294.99814 * 3 2 1 6 6 C 1.50700 * 109.47104 * 174.99547 * 3 2 1 7 7 C 1.38171 * 120.02618 * 60.02839 * 6 3 2 8 8 C 1.38241 * 120.05600 * 179.97438 * 7 6 3 9 9 C 1.38287 * 120.11294 * 0.02562 * 8 7 6 10 10 C 1.38126 * 120.05467 * 359.68817 * 9 8 7 11 11 C 1.38708 * 120.03189 * 239.99831 * 6 3 2 12 12 O 1.35896 * 120.05456 * 0.02670 * 11 6 3 13 13 C 1.42904 * 117.00192 * 179.97438 * 12 11 6 14 14 C 1.50705 * 109.47077 * 180.02562 * 13 12 11 15 15 O 1.21280 * 119.99748 * 359.97438 * 14 13 12 16 16 N 1.34769 * 119.99510 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99798 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.47068 * 34.99973 * 17 16 14 19 19 C 1.50699 * 109.47262 * 154.99826 * 17 16 14 20 20 H 1.08000 * 119.99792 * 0.02562 * 19 17 16 21 21 C 1.37878 * 119.99902 * 179.97438 * 19 17 16 22 22 N 1.31515 * 120.00126 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99745 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47438 * 0.02562 * 23 21 19 25 25 H 1.48491 * 109.47045 * 120.00577 * 23 21 19 26 26 H 1.48501 * 109.46950 * 240.00369 * 23 21 19 27 27 C 1.52997 * 109.47212 * 274.99913 * 17 16 14 28 28 C 1.53004 * 109.47236 * 64.99775 * 27 17 16 29 29 H 1.08995 * 109.47067 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47339 * 299.99994 * 1 2 3 31 31 H 1.09003 * 109.46656 * 60.00266 * 1 2 3 32 32 H 1.09001 * 109.47515 * 239.99659 * 2 1 3 33 33 H 1.09003 * 109.46656 * 119.99734 * 2 1 3 34 34 H 1.09001 * 109.47220 * 59.99963 * 5 3 2 35 35 H 1.09004 * 109.47299 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.46780 * 299.99732 * 5 3 2 37 37 H 1.07998 * 119.97095 * 359.97438 * 7 6 3 38 38 H 1.08006 * 119.94635 * 179.97438 * 8 7 6 39 39 H 1.08001 * 119.97378 * 179.97438 * 9 8 7 40 40 H 1.08000 * 120.03041 * 180.31551 * 10 9 8 41 41 H 1.08995 * 109.46784 * 59.99689 * 13 12 11 42 42 H 1.09000 * 109.46545 * 299.99796 * 13 12 11 43 43 H 0.97005 * 120.00963 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00073 * 179.97438 * 22 21 19 45 45 H 1.09001 * 109.47630 * 184.99905 * 27 17 16 46 46 H 1.09004 * 109.47346 * 305.00035 * 27 17 16 47 47 H 1.09001 * 109.46917 * 300.00567 * 28 27 17 48 48 H 1.09004 * 109.46741 * 59.99889 * 28 27 17 49 49 H 1.09000 * 109.47403 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1239 7 6 4.3155 0.8176 -0.8342 8 6 5.6933 0.8194 -0.7214 9 6 6.3008 1.4475 0.3504 10 6 5.5323 2.0805 1.3077 11 6 4.1489 2.0756 1.1996 12 8 3.3903 2.6927 2.1432 13 6 4.0831 3.3218 3.2232 14 6 3.0854 3.9478 4.1633 15 8 1.8980 3.8639 3.9310 16 7 3.5128 4.6017 5.2615 17 6 2.5429 5.2108 6.1751 18 1 1.6478 4.5905 6.2211 19 6 3.1489 5.3208 7.5505 20 1 4.1559 4.9723 7.7264 21 6 2.4181 5.8674 8.5841 22 7 1.1920 6.2922 8.3698 23 14 3.1695 6.0044 10.2888 24 1 4.5508 5.4598 10.2663 25 1 3.2069 7.4308 10.7000 26 1 2.3482 5.2320 11.2553 27 6 2.1713 6.6058 5.6685 28 6 1.4438 6.4845 4.3280 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5490 2.1252 -1.3970 35 1 1.9990 3.1541 -1.3076 36 1 2.0700 1.5875 -2.1491 37 1 3.8433 0.3260 -1.6719 38 1 6.2962 0.3286 -1.4711 39 1 7.3774 1.4471 0.4365 40 1 6.0074 2.5753 2.1419 41 1 4.7456 4.0927 2.8298 42 1 4.6706 2.5774 3.7605 43 1 4.4625 4.6691 5.4471 44 1 0.6778 6.6764 9.0970 45 1 1.5192 7.0938 6.3929 46 1 3.0770 7.1982 5.5380 47 1 2.0959 5.9965 3.6036 48 1 0.5381 5.8921 4.4585 49 1 1.1794 7.4784 3.9668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183959144.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:27 Heat of formation + Delta-G solvation = -89.576006 kcal Electronic energy + Delta-G solvation = -27127.194770 eV Core-core repulsion = 23439.079264 eV Total energy + Delta-G solvation = -3688.115506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52763 -40.53273 -38.55738 -36.95734 -36.82432 -34.35571 -33.00472 -32.08164 -31.09666 -30.00575 -29.34009 -28.21161 -25.70404 -25.03841 -23.76374 -22.84618 -22.09653 -21.22159 -20.67090 -19.17345 -18.98381 -17.57551 -17.44167 -17.17092 -16.84561 -16.52974 -16.05605 -15.80790 -15.50168 -15.35769 -15.03544 -14.76399 -14.59956 -14.44911 -14.00130 -13.75453 -13.58863 -13.48946 -13.19319 -13.15911 -12.97011 -12.88550 -12.71548 -12.70360 -12.60419 -12.21598 -12.16953 -12.09102 -12.00416 -11.64076 -11.60741 -11.47292 -11.28122 -11.06394 -10.70614 -10.53112 -9.72470 -9.69882 -9.05577 -8.17012 -6.34563 0.42676 0.53420 1.44178 1.45285 1.56831 1.71629 1.75825 2.40530 2.85668 2.91252 3.12934 3.68914 3.76485 3.89414 4.02397 4.12290 4.15168 4.17391 4.24096 4.35146 4.46709 4.48357 4.54308 4.56037 4.60987 4.71097 4.73121 4.75495 4.77180 5.03672 5.04326 5.09571 5.11772 5.15128 5.23180 5.26163 5.37705 5.40970 5.45771 5.52418 5.52655 5.59204 5.63133 5.68065 5.76573 5.86624 5.94358 6.14772 6.44388 6.73282 6.91926 7.31937 7.51595 8.88678 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.002840 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.080596 B = 9856.211764 C =10658.375936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.052 4.052 4 H 0.050 0.950 5 C -0.136 4.136 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.156 4.156 9 C -0.088 4.088 10 C -0.215 4.215 11 C 0.101 3.899 12 O -0.316 6.316 13 C 0.050 3.950 14 C 0.498 3.502 15 O -0.574 6.574 16 N -0.698 5.698 17 C 0.280 3.720 18 H -0.003 1.003 19 C -0.547 4.547 20 H 0.075 0.925 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.971 3.029 24 H -0.259 1.259 25 H -0.279 1.279 26 H -0.286 1.286 27 C -0.121 4.121 28 C -0.124 4.124 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.407 0.593 44 H 0.265 0.735 45 H 0.072 0.928 46 H 0.045 0.955 47 H 0.041 0.959 48 H 0.023 0.977 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.811 -10.673 -19.216 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.070 4.070 4 H 0.069 0.931 5 C -0.193 4.193 6 C -0.122 4.122 7 C -0.099 4.099 8 C -0.174 4.174 9 C -0.106 4.106 10 C -0.234 4.234 11 C 0.056 3.944 12 O -0.229 6.229 13 C -0.028 4.028 14 C 0.284 3.716 15 O -0.453 6.453 16 N -0.349 5.349 17 C 0.177 3.823 18 H 0.015 0.985 19 C -0.585 4.585 20 H 0.093 0.907 21 C -0.186 4.186 22 N -0.554 5.554 23 Si 0.796 3.204 24 H -0.182 1.182 25 H -0.205 1.205 26 H -0.212 1.212 27 C -0.160 4.160 28 C -0.181 4.181 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.165 0.835 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.243 0.757 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.042 0.958 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.597 -10.622 -19.261 23.998 hybrid contribution 0.293 0.473 1.544 1.641 sum 9.889 -10.149 -17.717 22.687 Atomic orbital electron populations 1.21830 0.95499 1.02085 1.01680 1.21513 0.96069 0.94748 1.02041 1.19998 0.90640 0.97398 0.99006 0.93140 1.21829 1.01651 0.99765 0.96071 1.19456 0.96288 1.01802 0.94650 1.21073 0.93876 0.97290 0.97632 1.21410 0.94575 1.01877 0.99568 1.21285 1.00904 0.95304 0.93090 1.21521 0.91720 1.06549 1.03590 1.19275 0.90707 0.94725 0.89704 1.86131 1.35437 1.67855 1.33473 1.22545 0.93619 0.99096 0.87541 1.20625 0.89540 0.79035 0.82447 1.90700 1.19265 1.60687 1.74670 1.46094 1.11450 1.54183 1.23200 1.18396 0.87520 0.89697 0.86726 0.98511 1.21602 1.01529 1.41660 0.93691 0.90683 1.25787 0.95122 0.94499 1.03158 1.70059 1.10682 1.41079 1.33553 0.85309 0.78813 0.77711 0.78564 1.18239 1.20502 1.21193 1.21795 0.99297 0.99105 0.95781 1.21682 0.99467 0.99089 0.97868 0.91600 0.94604 0.91414 0.89894 0.93566 0.91783 0.94036 0.90649 0.83500 0.83229 0.83242 0.83970 0.86632 0.86892 0.75710 0.92607 0.90914 0.93659 0.93963 0.95816 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 9.67 71.98 0.70 -2.39 16 2 C -0.11 -2.22 5.14 30.59 0.16 -2.07 16 3 C -0.05 -1.29 2.52 -11.54 -0.03 -1.32 16 4 H 0.05 1.68 6.99 -2.39 -0.02 1.66 16 5 C -0.14 -2.78 8.76 71.98 0.63 -2.15 16 6 C -0.12 -2.96 4.79 -19.77 -0.09 -3.06 16 7 C -0.08 -1.46 8.76 22.25 0.19 -1.27 16 8 C -0.16 -2.42 10.04 22.28 0.22 -2.19 16 9 C -0.09 -1.45 10.04 22.25 0.22 -1.23 16 10 C -0.22 -4.51 9.04 22.37 0.20 -4.31 16 11 C 0.10 2.74 6.66 22.51 0.15 2.89 16 12 O -0.32 -10.48 8.44 -73.35 -0.62 -11.10 16 13 C 0.05 1.42 5.22 71.24 0.37 1.80 16 14 C 0.50 19.79 6.48 87.66 0.57 20.36 16 15 O -0.57 -28.63 13.64 16.01 0.22 -28.41 16 16 N -0.70 -27.94 5.02 -446.10 -2.24 -30.18 16 17 C 0.28 14.22 2.24 44.24 0.10 14.32 16 18 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 19 C -0.55 -28.40 8.73 25.60 0.22 -28.18 16 20 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 21 C 0.01 0.77 5.29 84.65 0.45 1.22 16 22 N -0.92 -52.22 11.29 21.45 0.24 -51.98 16 23 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 24 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 27 C -0.12 -5.95 5.45 30.59 0.17 -5.78 16 28 C -0.12 -5.70 8.52 71.98 0.61 -5.09 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.19 6.56 -2.39 -0.02 1.17 16 32 H 0.08 1.33 7.57 -2.39 -0.02 1.31 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.23 6.57 -2.39 -0.02 1.21 16 35 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 1.17 7.39 -2.39 -0.02 1.15 16 37 H 0.15 1.92 7.16 -2.91 -0.02 1.90 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 2.41 6.30 -2.91 -0.02 2.39 16 41 H 0.12 2.54 7.65 -2.39 -0.02 2.52 16 42 H 0.11 2.56 7.67 -2.39 -0.02 2.54 16 43 H 0.41 13.14 8.54 -92.70 -0.79 12.35 16 44 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 46 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 47 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 48 H 0.02 1.18 7.85 -2.39 -0.02 1.16 16 49 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -70.50 387.04 4.62 -65.88 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.15 Total: 30.63 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: 4.84 Total: -18.45 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -2.00 Total: -82.16 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.40 Total: -39.51 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -70.50 4.62 -65.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183959144.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.700 kcal (2) G-P(sol) polarization free energy of solvation -70.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds