Wall clock time and date at job start Tue Mar 31 2020 13:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 C 1.53004 * 109.47202 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47390 * 179.97438 * 4 3 2 6 6 C 1.35991 * 117.00066 * 179.97438 * 5 4 3 7 7 C 1.38562 * 120.07553 * 359.73111 * 6 5 4 8 8 C 1.38237 * 120.00294 * 179.73993 * 7 6 5 9 9 C 1.38260 * 120.14439 * 0.50887 * 8 7 6 10 10 C 1.50696 * 119.92929 * 179.74349 * 9 8 7 11 11 N 1.46503 * 109.47268 * 270.02712 * 10 9 8 12 12 C 1.36936 * 120.00349 * 89.99662 * 11 10 9 13 13 H 1.08002 * 119.99615 * 304.47327 * 12 11 10 14 14 C 1.38806 * 120.00051 * 124.47343 * 12 11 10 15 15 N 1.31617 * 120.00440 * 164.67401 * 14 12 11 16 16 Si 1.86805 * 119.99991 * 344.66924 * 14 12 11 17 17 H 1.48506 * 109.46853 * 91.90790 * 16 14 12 18 18 H 1.48497 * 109.47450 * 211.90593 * 16 14 12 19 19 H 1.48500 * 109.47317 * 331.90801 * 16 14 12 20 20 C 1.46502 * 119.99475 * 270.00069 * 11 10 9 21 21 C 1.53002 * 117.49558 * 183.06948 * 20 11 10 22 22 C 1.52998 * 117.50008 * 114.41121 * 20 11 10 23 23 C 1.38240 * 120.14532 * 359.76868 * 9 8 7 24 24 C 1.38572 * 119.99744 * 359.97278 * 23 9 8 25 25 O 1.35995 * 120.06826 * 180.02562 * 24 23 9 26 26 C 1.42902 * 117.00384 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47305 * 299.99892 * 1 2 3 28 28 H 1.09000 * 109.47602 * 60.00396 * 1 2 3 29 29 H 1.09005 * 109.46586 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47305 * 240.00108 * 2 1 3 31 31 H 1.09000 * 109.47602 * 119.99604 * 2 1 3 32 32 H 1.08991 * 109.47174 * 59.99848 * 3 2 1 33 33 H 1.09001 * 109.46785 * 299.99372 * 3 2 1 34 34 H 1.09001 * 109.46815 * 300.00178 * 4 3 2 35 35 H 1.09003 * 109.47063 * 59.99454 * 4 3 2 36 36 H 1.08002 * 119.99621 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.93187 * 180.25429 * 8 7 6 38 38 H 1.09004 * 109.47000 * 30.02394 * 10 9 8 39 39 H 1.08995 * 109.47272 * 150.02025 * 10 9 8 40 40 H 0.96996 * 120.00686 * 179.97438 * 15 14 12 41 41 H 1.08999 * 115.54731 * 328.73203 * 20 11 10 42 42 H 1.08993 * 117.49879 * 359.97438 * 21 20 11 43 43 H 1.09001 * 117.49582 * 145.01475 * 21 20 11 44 44 H 1.09001 * 117.49603 * 214.97639 * 22 20 11 45 45 H 1.08999 * 117.49745 * 359.97089 * 22 20 11 46 46 H 1.08005 * 120.00034 * 180.02562 * 23 9 8 47 47 H 1.08993 * 109.47106 * 299.99817 * 26 25 24 48 48 H 1.09004 * 109.46620 * 59.99734 * 26 25 24 49 49 H 1.09001 * 109.46917 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3944 2.9681 -0.0013 7 6 6.2399 1.8704 0.0048 8 6 7.6102 2.0533 -0.0007 9 6 8.1402 3.3303 -0.0017 10 6 9.6347 3.5240 -0.0019 11 7 10.1191 3.5872 1.3792 12 6 10.4979 2.4407 2.0252 13 1 9.8088 1.6130 2.1049 14 6 11.7676 2.3425 2.5775 15 7 12.0359 1.3899 3.4452 16 14 13.0955 3.5622 2.0892 17 1 13.0876 4.7074 3.0346 18 1 14.4211 2.8943 2.1319 19 1 12.8335 4.0546 0.7130 20 6 10.1982 4.8771 2.0693 21 6 10.7794 4.8866 3.4846 22 6 9.2776 5.0923 3.2723 23 6 7.3023 4.4297 -0.0021 24 6 5.9278 4.2533 -0.0019 25 8 5.1022 5.3339 -0.0028 26 6 5.7199 6.6225 -0.0032 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9336 0.9287 0.8891 35 1 3.9329 0.9289 -0.8908 36 1 5.8284 0.8719 0.0100 37 1 8.2681 1.1969 -0.0001 38 1 10.1094 2.6879 -0.5155 39 1 9.8806 4.4530 -0.5161 40 1 12.9232 1.3209 3.8309 41 1 10.4060 5.7381 1.4341 42 1 11.1026 3.9332 3.9023 43 1 11.3693 5.7541 3.7805 44 1 8.8800 6.0951 3.4286 45 1 8.6127 4.2744 3.5499 46 1 7.7189 5.4262 -0.0033 47 1 6.3399 6.7285 0.8869 48 1 6.3407 6.7275 -0.8930 49 1 4.9503 7.3944 -0.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271147992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:35 Heat of formation + Delta-G solvation = -9.491873 kcal Electronic energy + Delta-G solvation = -27265.390081 eV Core-core repulsion = 23580.747284 eV Total energy + Delta-G solvation = -3684.642797 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.24907 -38.39097 -37.61377 -36.51449 -35.23529 -33.03970 -31.93482 -30.18518 -29.92161 -28.86756 -27.19695 -25.44575 -24.19479 -23.19868 -21.95847 -21.54835 -21.11980 -20.77851 -19.74725 -18.11610 -16.84074 -16.78114 -16.41081 -16.16059 -15.51973 -15.19029 -14.68091 -14.64816 -14.52850 -14.30006 -14.00423 -13.63643 -13.54416 -13.10430 -13.02495 -12.82822 -12.34127 -12.15030 -11.95912 -11.79762 -11.72990 -11.44414 -11.37105 -11.15434 -11.07412 -10.86785 -10.79822 -10.70537 -10.62800 -10.42985 -10.37503 -10.32022 -9.80897 -9.49822 -9.13938 -8.46124 -8.27140 -7.38386 -6.47092 -6.03158 -3.72982 1.70972 1.88810 3.31717 3.37762 3.46624 3.51787 3.53759 4.11793 4.51073 4.66701 4.70634 4.82316 4.88234 5.01042 5.05574 5.10446 5.18486 5.21102 5.30250 5.32191 5.34505 5.44711 5.51567 5.54433 5.56014 5.57462 5.67214 5.70692 5.83359 5.84860 5.88629 5.98348 5.98611 6.05505 6.07813 6.14778 6.28655 6.51643 6.56506 6.58135 6.63090 6.75743 7.04280 7.11047 7.21186 7.31686 7.32556 7.89215 8.07872 8.50784 8.98717 9.61765 10.11352 11.06268 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003225 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.858848 B = 8680.114151 C = 9638.752084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.118 4.118 4 C 0.059 3.941 5 O -0.311 6.311 6 C 0.085 3.915 7 C -0.174 4.174 8 C -0.096 4.096 9 C -0.073 4.073 10 C 0.184 3.816 11 N -0.565 5.565 12 C -0.282 4.282 13 H 0.071 0.929 14 C 0.057 3.943 15 N -0.897 5.897 16 Si 0.885 3.115 17 H -0.270 1.270 18 H -0.305 1.305 19 H -0.270 1.270 20 C 0.110 3.890 21 C -0.198 4.198 22 C -0.211 4.211 23 C -0.159 4.159 24 C 0.090 3.910 25 O -0.313 6.313 26 C 0.029 3.971 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.265 0.735 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.088 0.912 46 H 0.127 0.873 47 H 0.054 0.946 48 H 0.051 0.949 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 3.741 -8.403 18.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.155 4.155 4 C -0.017 4.017 5 O -0.225 6.225 6 C 0.040 3.960 7 C -0.193 4.193 8 C -0.115 4.115 9 C -0.076 4.076 10 C 0.058 3.942 11 N -0.284 5.284 12 C -0.411 4.411 13 H 0.088 0.912 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.713 3.287 17 H -0.196 1.196 18 H -0.233 1.233 19 H -0.195 1.195 20 C 0.003 3.997 21 C -0.236 4.236 22 C -0.251 4.251 23 C -0.178 4.178 24 C 0.045 3.955 25 O -0.227 6.227 26 C -0.066 4.066 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.106 0.894 46 H 0.145 0.855 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.226 3.777 -8.311 18.618 hybrid contribution 1.089 0.524 0.136 1.216 sum -15.137 4.300 -8.176 17.733 Atomic orbital electron populations 1.21747 0.95361 1.01716 1.02023 1.21440 0.96246 0.95843 1.02459 1.21548 0.92936 0.97445 1.03596 1.22756 0.95000 0.82706 1.01190 1.86083 1.18721 1.28069 1.89660 1.18072 0.82490 0.91197 1.04287 1.21003 0.94261 0.96853 1.07202 1.20826 0.93572 0.97503 0.99566 1.20681 0.98567 0.91908 0.96462 1.19946 0.87271 0.99960 0.86990 1.43532 1.73944 1.02463 1.08473 1.18530 0.96237 0.93283 1.33033 0.91201 1.25855 0.97467 0.95556 0.95684 1.69862 1.21886 1.34001 1.27845 0.86795 0.80411 0.81448 0.80024 1.19620 1.23278 1.19512 1.21293 1.01747 0.89496 0.87204 1.23514 0.95514 1.03433 1.01125 1.23328 0.93501 1.00197 1.08096 1.20896 0.90509 0.99950 1.06491 1.18177 0.88977 0.84889 1.03442 1.86103 1.34058 1.12942 1.89607 1.22977 0.99413 0.82956 1.01299 0.92575 0.92629 0.92582 0.91711 0.91614 0.90912 0.90998 0.92273 0.92418 0.85563 0.85497 0.91317 0.93702 0.92528 0.89711 0.86230 0.90785 0.91305 0.89352 0.85475 0.92691 0.93046 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.15 0.37 -0.66 16 2 C -0.12 -0.95 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -1.13 5.58 -26.73 -0.15 -1.28 16 4 C 0.06 0.70 4.74 37.16 0.18 0.88 16 5 O -0.31 -4.94 9.92 -34.22 -0.34 -5.28 16 6 C 0.08 1.44 6.70 -39.12 -0.26 1.18 16 7 C -0.17 -2.84 9.04 -39.46 -0.36 -3.19 16 8 C -0.10 -1.70 9.69 -39.57 -0.38 -2.09 16 9 C -0.07 -1.34 5.46 -104.61 -0.57 -1.91 16 10 C 0.18 3.58 5.83 -5.19 -0.03 3.55 16 11 N -0.57 -12.92 2.03 -167.02 -0.34 -13.26 16 12 C -0.28 -7.54 9.17 -15.06 -0.14 -7.68 16 13 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 14 C 0.06 1.57 3.74 -17.43 -0.07 1.51 16 15 N -0.90 -26.35 13.97 55.49 0.78 -25.58 16 16 Si 0.88 21.65 24.88 -169.99 -4.23 17.42 16 17 H -0.27 -6.35 5.80 56.52 0.33 -6.02 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.11 2.33 5.16 -67.93 -0.35 1.98 16 21 C -0.20 -4.35 6.69 -26.69 -0.18 -4.52 16 22 C -0.21 -4.27 10.36 -26.69 -0.28 -4.55 16 23 C -0.16 -2.69 8.69 -39.46 -0.34 -3.04 16 24 C 0.09 1.55 6.70 -39.12 -0.26 1.29 16 25 O -0.31 -5.05 10.28 -34.23 -0.35 -5.40 16 26 C 0.03 0.34 9.81 101.05 0.99 1.33 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.69 7.65 -51.93 -0.40 0.29 16 35 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 36 H 0.13 1.74 6.30 -52.49 -0.33 1.41 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.07 1.35 7.98 -51.93 -0.41 0.93 16 39 H 0.04 0.78 8.01 -51.93 -0.42 0.37 16 40 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.12 3.05 5.08 -51.93 -0.26 2.79 16 43 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 46 H 0.13 1.93 6.30 -52.48 -0.33 1.60 16 47 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 48 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 390.48 15.07 5.88 5.88 Total: -1.00 -30.81 390.48 -9.05 -39.86 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.46 Total: 4.67 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -1.99 Total: -18.31 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.44 Total: -38.83 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.69 Total: -10.68 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.23 Total: 17.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.81 -9.05 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271147992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.367 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds