Wall clock time and date at job start Tue Mar 31 2020 13:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46834 * 2 1 4 4 C 1.53004 * 109.47202 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47390 * 179.97438 * 4 3 2 6 6 C 1.35991 * 117.00066 * 179.97438 * 5 4 3 7 7 C 1.38562 * 120.07553 * 359.73111 * 6 5 4 8 8 C 1.38237 * 120.00294 * 179.73993 * 7 6 5 9 9 C 1.38260 * 120.14439 * 0.50887 * 8 7 6 10 10 C 1.50696 * 119.92929 * 179.74349 * 9 8 7 11 11 N 1.46503 * 109.47268 * 270.02712 * 10 9 8 12 12 C 1.36936 * 120.00349 * 89.99662 * 11 10 9 13 13 H 1.08002 * 119.99615 * 304.47327 * 12 11 10 14 14 C 1.38806 * 120.00051 * 124.47343 * 12 11 10 15 15 N 1.31617 * 120.00440 * 164.67401 * 14 12 11 16 16 Si 1.86805 * 119.99991 * 344.66924 * 14 12 11 17 17 H 1.48506 * 109.46853 * 91.90790 * 16 14 12 18 18 H 1.48497 * 109.47450 * 211.90593 * 16 14 12 19 19 H 1.48500 * 109.47317 * 331.90801 * 16 14 12 20 20 C 1.46502 * 119.99475 * 270.00069 * 11 10 9 21 21 C 1.53002 * 117.49558 * 183.06948 * 20 11 10 22 22 C 1.52998 * 117.50008 * 114.41121 * 20 11 10 23 23 C 1.38240 * 120.14532 * 359.76868 * 9 8 7 24 24 C 1.38572 * 119.99744 * 359.97278 * 23 9 8 25 25 O 1.35995 * 120.06826 * 180.02562 * 24 23 9 26 26 C 1.42902 * 117.00384 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47305 * 299.99892 * 1 2 3 28 28 H 1.09000 * 109.47602 * 60.00396 * 1 2 3 29 29 H 1.09005 * 109.46586 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47305 * 240.00108 * 2 1 3 31 31 H 1.09000 * 109.47602 * 119.99604 * 2 1 3 32 32 H 1.08991 * 109.47174 * 59.99848 * 3 2 1 33 33 H 1.09001 * 109.46785 * 299.99372 * 3 2 1 34 34 H 1.09001 * 109.46815 * 300.00178 * 4 3 2 35 35 H 1.09003 * 109.47063 * 59.99454 * 4 3 2 36 36 H 1.08002 * 119.99621 * 359.97438 * 7 6 5 37 37 H 1.08000 * 119.93187 * 180.25429 * 8 7 6 38 38 H 1.09004 * 109.47000 * 30.02394 * 10 9 8 39 39 H 1.08995 * 109.47272 * 150.02025 * 10 9 8 40 40 H 0.96996 * 120.00686 * 179.97438 * 15 14 12 41 41 H 1.08999 * 115.54731 * 328.73203 * 20 11 10 42 42 H 1.08993 * 117.49879 * 359.97438 * 21 20 11 43 43 H 1.09001 * 117.49582 * 145.01475 * 21 20 11 44 44 H 1.09001 * 117.49603 * 214.97639 * 22 20 11 45 45 H 1.08999 * 117.49745 * 359.97089 * 22 20 11 46 46 H 1.08005 * 120.00034 * 180.02562 * 23 9 8 47 47 H 1.08993 * 109.47106 * 299.99817 * 26 25 24 48 48 H 1.09004 * 109.46620 * 59.99734 * 26 25 24 49 49 H 1.09001 * 109.46917 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 8 4.0462 2.7899 -0.0012 6 6 5.3944 2.9681 -0.0013 7 6 6.2399 1.8704 0.0048 8 6 7.6102 2.0533 -0.0007 9 6 8.1402 3.3303 -0.0017 10 6 9.6347 3.5240 -0.0019 11 7 10.1191 3.5872 1.3792 12 6 10.4979 2.4407 2.0252 13 1 9.8088 1.6130 2.1049 14 6 11.7676 2.3425 2.5775 15 7 12.0359 1.3899 3.4452 16 14 13.0955 3.5622 2.0892 17 1 13.0876 4.7074 3.0346 18 1 14.4211 2.8943 2.1319 19 1 12.8335 4.0546 0.7130 20 6 10.1982 4.8771 2.0693 21 6 10.7794 4.8866 3.4846 22 6 9.2776 5.0923 3.2723 23 6 7.3023 4.4297 -0.0021 24 6 5.9278 4.2533 -0.0019 25 8 5.1022 5.3339 -0.0028 26 6 5.7199 6.6225 -0.0032 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6765 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9336 0.9287 0.8891 35 1 3.9329 0.9289 -0.8908 36 1 5.8284 0.8719 0.0100 37 1 8.2681 1.1969 -0.0001 38 1 10.1094 2.6879 -0.5155 39 1 9.8806 4.4530 -0.5161 40 1 12.9232 1.3209 3.8309 41 1 10.4060 5.7381 1.4341 42 1 11.1026 3.9332 3.9023 43 1 11.3693 5.7541 3.7805 44 1 8.8800 6.0951 3.4286 45 1 8.6127 4.2744 3.5499 46 1 7.7189 5.4262 -0.0033 47 1 6.3399 6.7285 0.8869 48 1 6.3407 6.7275 -0.8930 49 1 4.9503 7.3944 -0.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271147992.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:34 Heat of formation + Delta-G solvation = -25.255529 kcal Electronic energy + Delta-G solvation = -27266.073645 eV Core-core repulsion = 23580.747284 eV Total energy + Delta-G solvation = -3685.326361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.49102 -39.55094 -39.19517 -37.88155 -36.02825 -34.75881 -33.82649 -31.38376 -31.25646 -29.92045 -28.30460 -27.08646 -25.33273 -24.67926 -23.23943 -23.01917 -22.25276 -21.84371 -21.51159 -19.34693 -18.72602 -18.02055 -17.43411 -17.38893 -16.83148 -16.63656 -16.48574 -15.69547 -15.54738 -15.49770 -15.33943 -15.26101 -14.82875 -14.41391 -14.18957 -14.03692 -13.68044 -13.53083 -13.33841 -13.12134 -12.85479 -12.69851 -12.54412 -12.42830 -12.18549 -12.07203 -12.06537 -11.92580 -11.90260 -11.79293 -11.75581 -11.72810 -11.43344 -11.27338 -10.85558 -10.47363 -9.59405 -8.71627 -8.34963 -8.09942 -5.83801 0.39645 0.53162 1.45272 1.48005 1.60609 2.23301 2.42049 2.49175 2.74384 3.03690 3.32952 3.46485 3.80536 3.90961 3.96505 4.06822 4.08109 4.18420 4.24870 4.29540 4.33899 4.35690 4.41397 4.45300 4.46692 4.49519 4.55589 4.62506 4.68357 4.76871 4.85722 4.87704 4.90213 4.92234 4.99472 5.02688 5.08198 5.21465 5.25852 5.31174 5.34005 5.38516 5.42890 5.56315 5.78978 5.82791 6.01846 6.17643 6.33486 6.68421 7.12392 7.60030 8.11324 8.98555 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.003225 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.858848 B = 8680.114151 C = 9638.752084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.112 4.112 4 C 0.051 3.949 5 O -0.324 6.324 6 C 0.076 3.924 7 C -0.174 4.174 8 C -0.114 4.114 9 C -0.088 4.088 10 C 0.183 3.817 11 N -0.576 5.576 12 C -0.268 4.268 13 H 0.022 0.978 14 C 0.011 3.989 15 N -0.947 5.947 16 Si 0.944 3.056 17 H -0.251 1.251 18 H -0.317 1.317 19 H -0.257 1.257 20 C 0.106 3.894 21 C -0.213 4.213 22 C -0.194 4.194 23 C -0.155 4.155 24 C 0.083 3.917 25 O -0.329 6.329 26 C 0.019 3.981 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.264 0.736 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.055 0.945 46 H 0.149 0.851 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.916 6.469 -9.644 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.149 4.149 4 C -0.024 4.024 5 O -0.239 6.239 6 C 0.030 3.970 7 C -0.192 4.192 8 C -0.133 4.133 9 C -0.090 4.090 10 C 0.059 3.941 11 N -0.296 5.296 12 C -0.398 4.398 13 H 0.040 0.960 14 C -0.187 4.187 15 N -0.589 5.589 16 Si 0.770 3.230 17 H -0.176 1.176 18 H -0.246 1.246 19 H -0.181 1.181 20 C -0.001 4.001 21 C -0.251 4.251 22 C -0.235 4.235 23 C -0.174 4.174 24 C 0.038 3.962 25 O -0.244 6.244 26 C -0.075 4.075 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.141 0.859 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.074 0.926 46 H 0.166 0.834 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.147 6.532 -9.574 20.696 hybrid contribution 1.173 -0.353 0.529 1.335 sum -15.973 6.179 -9.046 19.369 Atomic orbital electron populations 1.21747 0.94501 1.02394 1.02154 1.21437 0.96948 0.94458 1.02859 1.21548 0.91234 0.98774 1.03369 1.23044 0.96394 0.81206 1.01716 1.86075 1.18018 1.30352 1.89466 1.18309 0.83179 0.91565 1.03918 1.21147 0.93586 0.97916 1.06568 1.20871 0.94285 0.97407 1.00718 1.20574 0.98036 0.92494 0.97921 1.20018 0.87836 1.01077 0.85202 1.43621 1.74216 1.01968 1.09759 1.18221 0.95306 0.93663 1.32639 0.96005 1.26438 0.99457 0.97326 0.95490 1.69994 1.22259 1.36755 1.29878 0.85843 0.76827 0.79774 0.80513 1.17556 1.24619 1.18128 1.21612 1.01607 0.89456 0.87387 1.23437 0.97084 1.02486 1.02058 1.23247 0.92064 1.01056 1.07098 1.21009 0.90277 1.00346 1.05754 1.18364 0.89296 0.85537 1.03041 1.86091 1.34803 1.14079 1.89398 1.23303 1.00697 0.81449 1.02040 0.92663 0.92323 0.91645 0.91021 0.91545 0.91458 0.90891 0.92263 0.91302 0.83670 0.86709 0.92413 0.90634 0.92748 0.85880 0.90306 0.88198 0.87393 0.92616 0.83351 0.92455 0.91640 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.69 5.93 30.59 0.18 -1.50 16 3 C -0.11 -2.04 5.58 30.60 0.17 -1.87 16 4 C 0.05 1.18 4.74 71.98 0.34 1.52 16 5 O -0.32 -10.10 9.92 -79.58 -0.79 -10.89 16 6 C 0.08 2.54 6.70 22.57 0.15 2.69 16 7 C -0.17 -5.67 9.04 22.35 0.20 -5.47 16 8 C -0.11 -4.14 9.69 22.27 0.22 -3.93 16 9 C -0.09 -3.15 5.46 -19.86 -0.11 -3.26 16 10 C 0.18 6.92 5.83 85.63 0.50 7.41 16 11 N -0.58 -25.85 2.03 -682.34 -1.39 -27.23 16 12 C -0.27 -14.80 9.17 84.03 0.77 -14.03 16 13 H 0.02 1.41 8.06 -2.91 -0.02 1.38 16 14 C 0.01 0.62 3.74 84.86 0.32 0.94 16 15 N -0.95 -57.99 13.97 21.65 0.30 -57.69 16 16 Si 0.94 44.44 24.88 68.60 1.71 46.15 16 17 H -0.25 -10.93 5.80 99.48 0.58 -10.35 16 18 H -0.32 -15.48 7.11 99.48 0.71 -14.78 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 C 0.11 4.18 5.16 44.99 0.23 4.41 16 21 C -0.21 -8.90 6.69 30.62 0.20 -8.69 16 22 C -0.19 -7.43 10.36 30.62 0.32 -7.11 16 23 C -0.15 -4.95 8.69 22.35 0.19 -4.75 16 24 C 0.08 2.75 6.70 22.57 0.15 2.90 16 25 O -0.33 -9.97 10.28 -79.62 -0.82 -10.79 16 26 C 0.02 0.39 9.81 113.37 1.11 1.50 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.35 7.65 -2.39 -0.02 1.33 16 35 H 0.07 1.42 7.68 -2.39 -0.02 1.40 16 36 H 0.15 4.00 6.30 -2.91 -0.02 3.98 16 37 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.06 2.27 7.98 -2.38 -0.02 2.25 16 39 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 40 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 42 H 0.08 4.03 5.08 -2.39 -0.01 4.02 16 43 H 0.10 3.63 7.86 -2.39 -0.02 3.61 16 44 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 46 H 0.15 3.99 6.30 -2.91 -0.02 3.97 16 47 H 0.06 1.13 7.66 -2.39 -0.02 1.12 16 48 H 0.07 1.14 7.66 -2.38 -0.02 1.12 16 49 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -68.92 390.48 5.46 -63.46 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.78 Total: 27.34 kcal Atomic # 6 Polarization: -36.00 SS G_CDS: 5.67 Total: -30.34 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -1.08 Total: -84.92 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.61 Total: -21.69 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.71 Total: 46.15 kcal Total: -68.92 5.46 -63.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271147992.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.208 kcal (2) G-P(sol) polarization free energy of solvation -68.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds