Wall clock time and date at job start Tue Mar 31 2020 13:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 H 1.09000 * 109.46611 * 304.99887 * 3 2 1 5 5 C 1.52994 * 109.47055 * 65.00259 * 3 2 1 6 6 C 1.53001 * 109.47055 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46862 * 299.99887 * 6 5 3 8 8 C 1.52994 * 109.47193 * 60.00198 * 7 6 5 9 9 C 1.53001 * 109.47055 * 299.99684 * 8 7 6 10 10 H 1.09003 * 109.47433 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47090 * 300.00447 * 9 8 7 12 12 O 1.21279 * 120.00203 * 106.79470 * 11 9 8 13 13 N 1.34777 * 119.99864 * 286.78966 * 11 9 8 14 14 C 1.46501 * 120.00102 * 4.17333 * 13 11 9 15 15 C 1.50699 * 109.47376 * 263.97985 * 14 13 11 16 16 H 1.07999 * 119.99522 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00157 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00081 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00237 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47316 * 59.99486 * 19 17 15 21 21 H 1.48494 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46736 * 299.99752 * 19 17 15 23 23 C 1.46500 * 119.99885 * 184.17251 * 13 11 9 24 24 C 1.50702 * 109.47280 * 270.00100 * 23 13 11 25 25 C 1.34514 * 125.78903 * 90.00218 * 24 23 13 26 26 C 1.41379 * 106.84064 * 179.97438 * 25 24 23 27 27 C 1.34512 * 106.84253 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.78928 * 269.97707 * 24 23 13 29 29 H 1.09001 * 109.46660 * 300.00369 * 1 2 3 30 30 H 1.09001 * 109.46872 * 59.99606 * 1 2 3 31 31 H 1.08993 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46660 * 239.99631 * 2 1 3 33 33 H 1.09001 * 109.46872 * 120.00394 * 2 1 3 34 34 H 1.08997 * 109.47492 * 59.99578 * 5 3 2 35 35 H 1.09004 * 109.46993 * 299.99483 * 5 3 2 36 36 H 1.08994 * 109.47276 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47165 * 60.00057 * 6 5 3 38 38 H 1.08997 * 109.46815 * 299.99889 * 7 6 5 39 39 H 1.09005 * 109.46680 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.46993 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47715 * 59.99380 * 8 7 6 42 42 H 1.08999 * 109.47085 * 23.98279 * 14 13 11 43 43 H 1.09001 * 109.46853 * 143.97415 * 14 13 11 44 44 H 0.97004 * 119.99882 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.47289 * 150.00317 * 23 13 11 46 46 H 1.09001 * 109.47223 * 30.00234 * 23 13 11 47 47 H 1.07997 * 126.57781 * 359.95975 * 25 24 23 48 48 H 1.07999 * 126.58308 * 180.02562 * 26 25 24 49 49 H 1.07995 * 125.79398 * 179.73439 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 2.1460 3.5688 1.3076 7 6 3.6709 3.5699 1.1821 8 6 4.0756 2.8859 -0.1252 9 6 3.5650 1.4436 -0.1255 10 1 3.8536 0.9561 -1.0567 11 6 4.1653 0.6980 1.0385 12 8 3.4801 0.4224 2.0005 13 7 5.4636 0.3373 1.0103 14 6 6.3140 0.7489 -0.1094 15 6 6.3782 -0.3615 -1.1262 16 1 5.8397 -1.2819 -0.9552 17 6 7.1252 -0.2028 -2.2741 18 7 7.7814 0.9179 -2.4820 19 14 7.2041 -1.5789 -3.5348 20 1 5.8366 -1.8718 -4.0343 21 1 8.0673 -1.1622 -4.6690 22 1 7.7718 -2.7970 -2.9030 23 6 6.0244 -0.4663 2.0993 24 6 6.5618 0.4460 3.1716 25 6 5.8698 0.9138 4.2260 26 6 6.7561 1.7264 4.9696 27 6 7.9365 1.7071 4.3250 28 8 7.8131 0.9295 3.2368 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0699 1.5874 2.1491 35 1 0.5491 2.1253 1.3969 36 1 1.8574 4.0562 2.2387 37 1 1.7117 4.1082 0.4658 38 1 4.1051 3.0306 2.0240 39 1 4.0347 4.5975 1.1828 40 1 5.1620 2.8864 -0.2143 41 1 3.6413 3.4252 -0.9671 42 1 5.8967 1.6427 -0.5732 43 1 7.3177 0.9647 0.2570 44 1 8.3066 1.0297 -3.2898 45 1 6.8319 -1.0884 1.7132 46 1 5.2454 -1.1021 2.5200 47 1 4.8356 0.7083 4.4594 48 1 6.5290 2.2603 5.8806 49 1 8.8307 2.2311 4.6286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279925282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:20 Heat of formation + Delta-G solvation = -39.232517 kcal Electronic energy + Delta-G solvation = -29198.705447 eV Core-core repulsion = 25512.772999 eV Total energy + Delta-G solvation = -3685.932448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15573 -40.28140 -37.10741 -35.15799 -33.53760 -32.84654 -32.47255 -31.26051 -29.70923 -28.62983 -27.26500 -25.64068 -23.52597 -23.32551 -22.18640 -21.31060 -20.56370 -20.32985 -19.82462 -18.02059 -17.12184 -16.49629 -16.19564 -15.68519 -15.21945 -14.92089 -14.64752 -14.37086 -14.23273 -13.88767 -13.53314 -13.12976 -13.00982 -12.98856 -12.48381 -12.41409 -12.38046 -12.33940 -12.24903 -11.78090 -11.54533 -11.31455 -11.16879 -11.08455 -11.04906 -10.89328 -10.75263 -10.53285 -10.33196 -10.25521 -10.15636 -9.79897 -9.57744 -9.55731 -9.41844 -8.67691 -8.51282 -8.10041 -7.79265 -6.18864 -4.26032 2.06325 2.94131 3.23377 3.24901 3.28825 3.31178 3.55420 4.03565 4.32943 5.00137 5.07723 5.11529 5.13720 5.17859 5.36279 5.38415 5.44114 5.50166 5.55184 5.59135 5.72351 5.80687 5.90341 5.91919 5.99188 6.03660 6.06885 6.09284 6.13892 6.22362 6.25574 6.32387 6.34680 6.41621 6.45687 6.48816 6.59528 6.63645 6.64443 6.69673 6.79939 6.84362 6.87166 7.10953 7.27264 7.49210 7.56424 7.74886 8.04480 8.33430 8.77739 9.02028 9.41331 10.87954 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008007 B = 0.006915 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.257730 B = 4048.313978 C = 6281.128039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.060 4.060 4 H 0.064 0.936 5 C -0.135 4.135 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.100 4.100 10 H 0.105 0.895 11 C 0.532 3.468 12 O -0.560 6.560 13 N -0.591 5.591 14 C 0.226 3.774 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.890 5.890 19 Si 0.895 3.105 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.196 3.804 24 C -0.014 4.014 25 C -0.198 4.198 26 C -0.220 4.220 27 C -0.050 4.050 28 O -0.170 6.170 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.033 0.967 44 H 0.266 0.734 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.775 3.104 8.260 11.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C -0.079 4.079 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.121 4.121 10 H 0.123 0.877 11 C 0.322 3.678 12 O -0.441 6.441 13 N -0.320 5.320 14 C 0.106 3.894 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C 0.072 3.928 24 C -0.065 4.065 25 C -0.218 4.218 26 C -0.239 4.239 27 C -0.119 4.119 28 O -0.065 6.065 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.120 0.880 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -6.751 2.988 8.370 11.161 hybrid contribution 0.249 -0.452 -0.715 0.882 sum -6.502 2.536 7.655 10.359 Atomic orbital electron populations 1.21770 0.96663 1.00772 1.01205 1.21690 0.95077 0.96833 1.02896 1.20896 0.93034 0.96029 0.97939 0.91774 1.22060 0.99476 0.95352 1.00283 1.21488 0.95709 0.97489 1.00420 1.21540 0.96037 0.99870 0.98219 1.21694 1.02317 0.93643 0.97660 1.21301 0.95416 0.96537 0.98800 0.87705 1.20459 0.81314 0.78351 0.87673 1.90403 1.60534 1.57305 1.35895 1.48329 1.09929 1.51744 1.22025 1.19769 0.90192 0.96724 0.82678 1.21437 1.30623 1.01755 1.03979 0.92094 1.24920 0.94968 0.95818 0.97970 1.69916 1.30747 1.24873 1.27242 0.86599 0.78195 0.82197 0.80748 1.20069 1.21160 1.20143 1.19672 0.98509 0.90067 0.84552 1.23254 0.82256 1.01730 0.99299 1.21628 1.01043 1.02465 0.96699 1.21778 0.94015 1.05113 1.02994 1.23940 1.00573 0.99052 0.88288 1.84088 1.31196 1.50756 1.40439 0.92767 0.93451 0.93474 0.92589 0.90180 0.87471 0.93298 0.92979 0.92988 0.91990 0.92681 0.89848 0.91526 0.92588 0.94879 0.92463 0.88731 0.87961 0.83527 0.84099 0.78732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.13 -1.96 5.03 -26.73 -0.13 -2.10 16 3 C -0.06 -0.93 1.93 -90.62 -0.18 -1.11 16 4 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 5 C -0.13 -2.02 4.69 -26.73 -0.13 -2.14 16 6 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 7 C -0.12 -1.86 5.70 -26.73 -0.15 -2.01 16 8 C -0.12 -1.95 5.12 -26.73 -0.14 -2.09 16 9 C -0.10 -1.77 1.72 -91.77 -0.16 -1.93 16 10 H 0.10 2.07 7.53 -51.93 -0.39 1.68 16 11 C 0.53 10.22 5.07 -10.99 -0.06 10.16 16 12 O -0.56 -10.88 11.17 5.56 0.06 -10.82 16 13 N -0.59 -11.96 2.44 -176.43 -0.43 -12.39 16 14 C 0.23 5.24 4.71 -5.19 -0.02 5.22 16 15 C -0.54 -13.64 9.21 -34.44 -0.32 -13.96 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 19 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 C 0.20 3.62 5.92 -5.19 -0.03 3.59 16 24 C -0.01 -0.25 6.90 -35.62 -0.25 -0.49 16 25 C -0.20 -3.32 10.81 -39.70 -0.43 -3.74 16 26 C -0.22 -3.21 10.91 -39.70 -0.43 -3.64 16 27 C -0.05 -0.73 12.09 29.42 0.36 -0.37 16 28 O -0.17 -3.07 10.65 5.71 0.06 -3.01 16 29 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.38 6.14 -51.93 -0.32 1.06 16 34 H 0.11 1.86 5.07 -51.93 -0.26 1.59 16 35 H 0.05 0.67 6.57 -51.93 -0.34 0.33 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.10 7.21 -51.93 -0.37 0.72 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.58 5.42 -51.93 -0.28 1.30 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.32 3.96 -51.93 -0.21 1.12 16 43 H 0.03 0.85 8.12 -51.93 -0.42 0.43 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.09 1.75 8.07 -51.93 -0.42 1.33 16 46 H 0.10 1.78 7.48 -51.93 -0.39 1.39 16 47 H 0.15 2.43 8.06 -52.49 -0.42 2.00 16 48 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 49 H 0.20 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -27.27 376.83 -8.81 -36.08 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.94 Total: 8.93 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -1.96 Total: -16.26 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.31 Total: -35.85 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.12 Total: -13.83 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.27 -8.81 -36.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279925282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.149 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds