Wall clock time and date at job start Tue Mar 31 2020 13:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47317 * 2 1 4 4 H 1.09000 * 109.46611 * 304.99887 * 3 2 1 5 5 C 1.52994 * 109.47055 * 65.00259 * 3 2 1 6 6 C 1.53001 * 109.47055 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46862 * 299.99887 * 6 5 3 8 8 C 1.52994 * 109.47193 * 60.00198 * 7 6 5 9 9 C 1.53001 * 109.47055 * 299.99684 * 8 7 6 10 10 H 1.09003 * 109.47433 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47090 * 300.00447 * 9 8 7 12 12 O 1.21279 * 120.00203 * 106.79470 * 11 9 8 13 13 N 1.34777 * 119.99864 * 286.78966 * 11 9 8 14 14 C 1.46501 * 120.00102 * 4.17333 * 13 11 9 15 15 C 1.50699 * 109.47376 * 263.97985 * 14 13 11 16 16 H 1.07999 * 119.99522 * 359.97438 * 15 14 13 17 17 C 1.37867 * 120.00157 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00081 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00237 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47316 * 59.99486 * 19 17 15 21 21 H 1.48494 * 109.47349 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46736 * 299.99752 * 19 17 15 23 23 C 1.46500 * 119.99885 * 184.17251 * 13 11 9 24 24 C 1.50702 * 109.47280 * 270.00100 * 23 13 11 25 25 C 1.34514 * 125.78903 * 90.00218 * 24 23 13 26 26 C 1.41379 * 106.84064 * 179.97438 * 25 24 23 27 27 C 1.34512 * 106.84253 * 0.02562 * 26 25 24 28 28 O 1.34298 * 125.78928 * 269.97707 * 24 23 13 29 29 H 1.09001 * 109.46660 * 300.00369 * 1 2 3 30 30 H 1.09001 * 109.46872 * 59.99606 * 1 2 3 31 31 H 1.08993 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46660 * 239.99631 * 2 1 3 33 33 H 1.09001 * 109.46872 * 120.00394 * 2 1 3 34 34 H 1.08997 * 109.47492 * 59.99578 * 5 3 2 35 35 H 1.09004 * 109.46993 * 299.99483 * 5 3 2 36 36 H 1.08994 * 109.47276 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47165 * 60.00057 * 6 5 3 38 38 H 1.08997 * 109.46815 * 299.99889 * 7 6 5 39 39 H 1.09005 * 109.46680 * 180.02562 * 7 6 5 40 40 H 1.09004 * 109.46993 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47715 * 59.99380 * 8 7 6 42 42 H 1.08999 * 109.47085 * 23.98279 * 14 13 11 43 43 H 1.09001 * 109.46853 * 143.97415 * 14 13 11 44 44 H 0.97004 * 119.99882 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.47289 * 150.00317 * 23 13 11 46 46 H 1.09001 * 109.47223 * 30.00234 * 23 13 11 47 47 H 1.07997 * 126.57781 * 359.95975 * 25 24 23 48 48 H 1.07999 * 126.58308 * 180.02562 * 26 25 24 49 49 H 1.07995 * 125.79398 * 179.73439 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6354 2.1265 1.3073 6 6 2.1460 3.5688 1.3076 7 6 3.6709 3.5699 1.1821 8 6 4.0756 2.8859 -0.1252 9 6 3.5650 1.4436 -0.1255 10 1 3.8536 0.9561 -1.0567 11 6 4.1653 0.6980 1.0385 12 8 3.4801 0.4224 2.0005 13 7 5.4636 0.3373 1.0103 14 6 6.3140 0.7489 -0.1094 15 6 6.3782 -0.3615 -1.1262 16 1 5.8397 -1.2819 -0.9552 17 6 7.1252 -0.2028 -2.2741 18 7 7.7814 0.9179 -2.4820 19 14 7.2041 -1.5789 -3.5348 20 1 5.8366 -1.8718 -4.0343 21 1 8.0673 -1.1622 -4.6690 22 1 7.7718 -2.7970 -2.9030 23 6 6.0244 -0.4663 2.0993 24 6 6.5618 0.4460 3.1716 25 6 5.8698 0.9138 4.2260 26 6 6.7561 1.7264 4.9696 27 6 7.9365 1.7071 4.3250 28 8 7.8131 0.9295 3.2368 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0699 1.5874 2.1491 35 1 0.5491 2.1253 1.3969 36 1 1.8574 4.0562 2.2387 37 1 1.7117 4.1082 0.4658 38 1 4.1051 3.0306 2.0240 39 1 4.0347 4.5975 1.1828 40 1 5.1620 2.8864 -0.2143 41 1 3.6413 3.4252 -0.9671 42 1 5.8967 1.6427 -0.5732 43 1 7.3177 0.9647 0.2570 44 1 8.3066 1.0297 -3.2898 45 1 6.8319 -1.0884 1.7132 46 1 5.2454 -1.1021 2.5200 47 1 4.8356 0.7083 4.4594 48 1 6.5290 2.2603 5.8806 49 1 8.8307 2.2311 4.6286 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279925282.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:17 Heat of formation + Delta-G solvation = -50.943783 kcal Electronic energy + Delta-G solvation = -29199.213286 eV Core-core repulsion = 25512.772999 eV Total energy + Delta-G solvation = -3686.440287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.45638 -41.73550 -38.52583 -36.79725 -34.79164 -34.63794 -33.88531 -32.62515 -31.09588 -29.82983 -29.09982 -27.06040 -25.15595 -24.69102 -23.63743 -22.58113 -21.87473 -21.58978 -21.14897 -19.54058 -18.77338 -18.14029 -17.69385 -17.16949 -16.66899 -16.46962 -16.08373 -15.91111 -15.59958 -15.19440 -14.77329 -14.54804 -14.42974 -14.39217 -14.03495 -13.81678 -13.70144 -13.65510 -13.53548 -13.30937 -12.95387 -12.83983 -12.75032 -12.65009 -12.45206 -12.28808 -12.21643 -12.02117 -11.87562 -11.67681 -11.61424 -11.45777 -10.83623 -10.82626 -10.76667 -10.55827 -10.06501 -9.57574 -9.32775 -8.19467 -6.33678 0.76318 1.42298 1.42612 1.50465 1.69050 1.79939 2.20176 2.39144 2.53965 3.10609 3.64513 3.79216 3.83494 3.87801 4.07100 4.18175 4.21265 4.24075 4.30038 4.39422 4.42709 4.53928 4.56969 4.63754 4.66374 4.78333 4.80945 4.83600 4.91276 4.92553 4.99482 5.06479 5.07965 5.10318 5.19763 5.20822 5.25643 5.32448 5.35662 5.39383 5.42676 5.53838 5.59942 5.64501 5.68477 5.75789 5.89434 6.06661 6.26880 6.62719 6.82887 7.33898 7.46817 8.86234 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008007 B = 0.006915 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.257730 B = 4048.313978 C = 6281.128039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C -0.057 4.057 4 H 0.081 0.919 5 C -0.129 4.129 6 C -0.109 4.109 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.099 4.099 10 H 0.079 0.921 11 C 0.531 3.469 12 O -0.561 6.561 13 N -0.597 5.597 14 C 0.245 3.755 15 C -0.547 4.547 16 H 0.055 0.945 17 C 0.022 3.978 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.273 1.273 23 C 0.196 3.804 24 C -0.043 4.043 25 C -0.196 4.196 26 C -0.223 4.223 27 C -0.045 4.045 28 O -0.196 6.196 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.002 0.998 44 H 0.267 0.733 45 H 0.084 0.916 46 H 0.109 0.891 47 H 0.145 0.855 48 H 0.173 0.827 49 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.213 4.009 8.705 12.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.075 4.075 4 H 0.099 0.901 5 C -0.166 4.166 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.150 4.150 9 C -0.120 4.120 10 H 0.098 0.902 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.327 5.327 14 C 0.124 3.876 15 C -0.585 4.585 16 H 0.073 0.927 17 C -0.178 4.178 18 N -0.559 5.559 19 Si 0.779 3.221 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.198 1.198 23 C 0.073 3.927 24 C -0.094 4.094 25 C -0.216 4.216 26 C -0.242 4.242 27 C -0.112 4.112 28 O -0.092 6.092 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.020 0.980 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.127 0.873 47 H 0.163 0.837 48 H 0.190 0.810 49 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.210 3.881 8.838 12.672 hybrid contribution 0.730 -0.715 -0.759 1.273 sum -7.480 3.167 8.078 11.456 Atomic orbital electron populations 1.21713 0.94212 1.01654 1.02150 1.21641 0.97213 0.96386 1.01152 1.20927 0.91040 0.96478 0.99104 0.90094 1.21961 1.00514 0.95566 0.98590 1.21475 0.94054 0.97087 1.01997 1.21483 0.97488 0.99994 0.96108 1.21643 1.00548 0.93471 0.99311 1.21321 0.97296 0.96609 0.96763 0.90229 1.20731 0.80815 0.78183 0.88116 1.90412 1.60321 1.57317 1.36169 1.48296 1.10207 1.52308 1.21899 1.19344 0.89044 0.96186 0.83019 1.21655 1.30348 1.01945 1.04580 0.92666 1.25636 0.94624 0.97841 0.99702 1.70017 1.31483 1.26501 1.27850 0.85665 0.78365 0.79522 0.78505 1.19433 1.20709 1.19829 1.19647 0.98379 0.90239 0.84476 1.23076 0.82938 1.03347 1.00010 1.21761 1.01119 1.02270 0.96490 1.22125 0.93355 1.04821 1.03881 1.24842 1.02146 0.97533 0.86663 1.84067 1.31261 1.51767 1.42148 0.92100 0.92101 0.92751 0.93752 0.92523 0.89975 0.91302 0.91562 0.91083 0.94643 0.91192 0.92674 0.89746 0.92948 0.97963 0.92370 0.89763 0.87314 0.83726 0.80973 0.74667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.67 71.98 0.70 -2.59 16 2 C -0.13 -3.82 5.03 30.60 0.15 -3.67 16 3 C -0.06 -1.70 1.93 -10.79 -0.02 -1.72 16 4 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 5 C -0.13 -3.63 4.69 30.59 0.14 -3.49 16 6 C -0.11 -2.77 5.92 30.60 0.18 -2.59 16 7 C -0.11 -3.42 5.70 30.59 0.17 -3.25 16 8 C -0.11 -3.80 5.12 30.59 0.16 -3.64 16 9 C -0.10 -3.57 1.72 -11.54 -0.02 -3.59 16 10 H 0.08 3.27 7.53 -2.39 -0.02 3.25 16 11 C 0.53 21.11 5.07 87.66 0.44 21.55 16 12 O -0.56 -22.34 11.17 -3.03 -0.03 -22.37 16 13 N -0.60 -25.47 2.44 -830.49 -2.03 -27.49 16 14 C 0.24 12.00 4.71 85.63 0.40 12.40 16 15 C -0.55 -28.67 9.21 25.60 0.24 -28.44 16 16 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 17 C 0.02 1.19 5.46 84.65 0.46 1.65 16 18 N -0.92 -51.18 13.29 21.44 0.28 -50.89 16 19 Si 0.95 41.96 29.54 68.60 2.03 43.99 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C 0.20 7.66 5.92 85.63 0.51 8.17 16 24 C -0.04 -1.59 6.90 24.83 0.17 -1.42 16 25 C -0.20 -6.57 10.81 22.19 0.24 -6.33 16 26 C -0.22 -6.15 10.91 22.19 0.24 -5.91 16 27 C -0.04 -1.23 12.09 66.97 0.81 -0.43 16 28 O -0.20 -7.23 10.65 -2.48 -0.03 -7.26 16 29 H 0.06 1.35 6.56 -2.39 -0.02 1.33 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.97 6.14 -2.39 -0.01 1.96 16 34 H 0.08 2.78 5.07 -2.39 -0.01 2.77 16 35 H 0.07 1.67 6.57 -2.39 -0.02 1.66 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.58 8.14 -2.38 -0.02 1.57 16 38 H 0.03 1.25 7.21 -2.39 -0.02 1.23 16 39 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 2.18 5.42 -2.39 -0.01 2.16 16 41 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.05 2.62 3.96 -2.39 -0.01 2.61 16 43 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 44 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 45 H 0.08 3.36 8.07 -2.38 -0.02 3.34 16 46 H 0.11 3.99 7.48 -2.39 -0.02 3.97 16 47 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 48 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 49 H 0.24 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -60.24 376.83 6.13 -54.11 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.93 Total: 33.22 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.98 Total: -23.30 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -1.74 Total: -78.39 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.06 Total: -29.63 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.24 6.13 -54.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279925282.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.163 kcal (2) G-P(sol) polarization free energy of solvation -60.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds