Wall clock time and date at job start Tue Mar 31 2020 13:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.53005 * 109.47407 * 120.00224 * 2 1 3 5 5 O 1.42900 * 109.46778 * 296.43834 * 4 2 1 6 6 C 1.53004 * 109.47050 * 240.00279 * 2 1 3 7 7 H 1.08996 * 109.47233 * 305.43793 * 6 2 1 8 8 C 1.53002 * 109.47142 * 65.44164 * 6 2 1 9 9 N 1.46506 * 109.46985 * 291.40174 * 8 6 2 10 10 C 1.34775 * 120.00188 * 173.44565 * 9 8 6 11 11 O 1.21281 * 120.00045 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99759 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47137 * 89.99700 * 18 16 14 20 20 H 1.48501 * 109.46772 * 209.99801 * 18 16 14 21 21 H 1.48499 * 109.47198 * 329.99624 * 18 16 14 22 22 C 1.50702 * 109.47092 * 185.43592 * 6 2 1 23 23 C 1.38234 * 120.00175 * 285.46005 * 22 6 2 24 24 C 1.38239 * 119.99716 * 179.81052 * 23 22 6 25 25 C 1.38234 * 120.00018 * 0.39596 * 24 23 22 26 26 C 1.38238 * 120.00311 * 359.85960 * 25 24 23 27 27 C 1.38234 * 119.99518 * 359.95347 * 26 25 24 28 28 H 1.09003 * 109.46894 * 289.62698 * 1 2 3 29 29 H 1.09004 * 109.47142 * 49.62120 * 1 2 3 30 30 H 1.08992 * 109.47436 * 169.62788 * 1 2 3 31 31 H 1.08999 * 109.47068 * 175.80139 * 3 2 1 32 32 H 1.08997 * 109.47609 * 295.80456 * 3 2 1 33 33 H 1.09005 * 109.46995 * 55.80959 * 3 2 1 34 34 H 1.08994 * 109.46756 * 56.43935 * 4 2 1 35 35 H 1.08994 * 109.47109 * 176.43913 * 4 2 1 36 36 H 0.96702 * 113.99175 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.47350 * 51.39397 * 8 6 2 38 38 H 1.08992 * 109.47631 * 171.40024 * 8 6 2 39 39 H 0.97007 * 119.99366 * 353.43728 * 9 8 6 40 40 H 1.09000 * 109.47307 * 300.00127 * 12 10 9 41 41 H 1.09001 * 109.46664 * 60.00316 * 12 10 9 42 42 H 1.09000 * 109.47401 * 300.00322 * 13 12 10 43 43 H 1.09006 * 109.47295 * 60.00436 * 13 12 10 44 44 H 0.97002 * 119.99769 * 180.02562 * 17 16 14 45 45 H 1.07996 * 120.00478 * 359.97438 * 23 22 6 46 46 H 1.08004 * 119.99784 * 180.23189 * 24 23 22 47 47 H 1.07998 * 119.99846 * 179.83152 * 25 24 23 48 48 H 1.07994 * 120.00507 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00040 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6333 -0.0011 2.4145 6 6 2.0400 -0.7212 -1.2493 7 1 1.5993 -1.7169 -1.2994 8 6 1.6447 0.0748 -2.4948 9 7 0.1915 0.0157 -2.6712 10 6 -0.4015 0.7545 -3.6298 11 8 0.2677 1.4687 -4.3460 12 6 -1.8963 0.6933 -3.8116 13 6 -2.3091 1.6200 -4.9569 14 6 -3.8038 1.5593 -5.1384 15 1 -4.3999 0.9235 -4.5003 16 6 -4.4106 2.3152 -6.1189 17 7 -3.6848 3.0889 -6.8961 18 14 -6.2635 2.2404 -6.3433 19 1 -6.9071 3.2755 -5.4950 20 1 -6.5999 2.4888 -7.7682 21 1 -6.7566 0.8974 -5.9452 22 6 3.5410 -0.8388 -1.1839 23 6 4.3320 0.2709 -1.4153 24 6 5.7087 0.1638 -1.3514 25 6 6.2946 -1.0549 -1.0641 26 6 5.5037 -2.1659 -0.8379 27 6 4.1269 -2.0579 -0.8980 28 1 -0.3633 0.3452 0.9680 29 1 -0.3634 0.6658 -0.7829 30 1 -0.3634 -1.0108 -0.1850 31 1 3.1274 1.4434 0.0752 32 1 1.7394 1.9343 -0.9251 33 1 1.6166 1.9776 0.8501 34 1 1.6256 -1.7288 1.2816 35 1 3.1281 -0.7769 1.2178 36 1 1.9223 -0.4023 3.2455 37 1 1.9542 1.1131 -2.3758 38 1 2.1346 -0.3524 -3.3697 39 1 -0.3438 -0.5554 -2.0982 40 1 -2.1921 -0.3292 -4.0464 41 1 -2.3874 1.0116 -2.8921 42 1 -2.0132 2.6424 -4.7216 43 1 -1.8179 1.3021 -5.8766 44 1 -4.1117 3.6210 -7.5857 45 1 3.8745 1.2222 -1.6434 46 1 6.3267 1.0317 -1.5285 47 1 7.3702 -1.1392 -1.0169 48 1 5.9613 -3.1181 -0.6139 49 1 3.5089 -2.9257 -0.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291822931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:21 Heat of formation + Delta-G solvation = -74.806863 kcal Electronic energy + Delta-G solvation = -27345.876924 eV Core-core repulsion = 23658.401856 eV Total energy + Delta-G solvation = -3687.475068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.80646 -39.00562 -38.02367 -36.16533 -33.53930 -33.39137 -31.96095 -31.26221 -30.93501 -28.33069 -27.50760 -26.61994 -25.60415 -23.65749 -22.67388 -21.58531 -21.29216 -19.75453 -18.86206 -17.69151 -17.10345 -16.64048 -16.17585 -15.76151 -15.46766 -15.36777 -14.96904 -14.86554 -14.58092 -14.38439 -14.28377 -13.59737 -13.51462 -13.11095 -13.02532 -12.79247 -12.59175 -12.44326 -12.17164 -12.12779 -11.92782 -11.65952 -11.59686 -11.14987 -11.13419 -10.95542 -10.90454 -10.78564 -10.58254 -10.41167 -10.18000 -9.92128 -9.63140 -9.15580 -9.13485 -9.01877 -8.86239 -8.62076 -8.29242 -5.93583 -3.97757 1.08691 1.15401 3.31139 3.35061 3.40756 3.43276 3.48671 3.60878 3.87419 4.40055 4.50012 4.51831 4.61904 4.74235 4.77062 4.82352 4.93244 5.01951 5.10558 5.17915 5.26969 5.29774 5.35217 5.41343 5.46040 5.58341 5.68220 5.70789 5.75699 5.80183 5.85002 5.88898 5.95740 6.04112 6.20508 6.24824 6.26511 6.27508 6.28176 6.33630 6.40890 6.73428 6.77959 6.93405 7.37476 7.77327 7.89947 7.92749 8.10378 8.41859 8.83453 9.11084 9.65580 11.17403 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002633 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.181354 B =10632.444320 C =11439.284629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.049 4.049 3 C -0.150 4.150 4 C 0.086 3.914 5 O -0.568 6.568 6 C -0.052 4.052 7 H 0.086 0.914 8 C 0.124 3.876 9 N -0.744 5.744 10 C 0.507 3.493 11 O -0.535 6.535 12 C -0.131 4.131 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.070 4.070 23 C -0.111 4.111 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.048 0.952 36 H 0.375 0.625 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.668 -12.029 19.380 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.049 4.049 3 C -0.207 4.207 4 C 0.008 3.992 5 O -0.372 6.372 6 C -0.071 4.071 7 H 0.104 0.896 8 C 0.000 4.000 9 N -0.401 5.401 10 C 0.295 3.705 11 O -0.410 6.410 12 C -0.171 4.171 13 C 0.000 4.000 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.071 4.071 23 C -0.129 4.129 24 C -0.136 4.136 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.221 0.779 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.146 0.854 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.868 -10.982 18.226 28.440 hybrid contribution -0.868 -0.801 0.512 1.287 sum 18.000 -11.783 18.739 28.531 Atomic orbital electron populations 1.22221 0.93660 1.01886 1.03705 1.20465 0.96417 0.96227 0.91766 1.22092 1.01160 0.94856 1.02571 1.22248 0.97862 0.93709 0.85354 1.86487 1.80404 1.54334 1.16011 1.20465 0.91694 1.00204 0.94728 0.89587 1.21380 0.82030 1.00849 0.95705 1.46616 1.07464 1.48309 1.37756 1.21558 0.91905 0.78426 0.78565 1.90668 1.66350 1.39504 1.44491 1.21867 0.88478 1.03317 1.03390 1.18888 0.95386 0.94122 0.91623 1.21229 0.92446 1.25843 1.16940 0.92632 1.25027 0.98085 0.95425 0.95878 1.69999 1.35218 1.27361 1.20276 0.86597 0.85788 0.78317 0.77281 1.20678 1.21244 1.19908 1.19634 0.94436 0.93664 0.99340 1.21243 0.93628 0.98740 0.99292 1.21186 0.94895 0.97776 0.99755 1.21151 0.99767 0.93072 1.00249 1.21104 0.93717 0.98584 1.00487 1.21038 0.94930 0.96872 1.00636 0.91473 0.90452 0.92862 0.92149 0.91833 0.91756 0.94011 0.93389 0.77862 0.90478 0.91862 0.76361 0.90338 0.90300 0.95837 0.95854 0.92976 0.85358 0.86024 0.86290 0.86213 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 6.90 37.16 0.26 -1.32 16 2 C -0.05 -0.46 0.41 -154.50 -0.06 -0.52 16 3 C -0.15 -1.59 6.74 37.16 0.25 -1.34 16 4 C 0.09 0.71 5.58 37.16 0.21 0.91 16 5 O -0.57 -4.93 12.24 -35.23 -0.43 -5.36 16 6 C -0.05 -0.49 1.70 -91.77 -0.16 -0.64 16 7 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 8 C 0.12 1.55 4.23 -4.04 -0.02 1.54 16 9 N -0.74 -10.35 3.71 -60.29 -0.22 -10.57 16 10 C 0.51 9.77 7.83 -10.99 -0.09 9.69 16 11 O -0.53 -12.70 15.96 5.56 0.09 -12.61 16 12 C -0.13 -2.67 5.64 -27.89 -0.16 -2.82 16 13 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 14 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 18 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.07 -0.64 3.39 -104.62 -0.35 -1.00 16 23 C -0.11 -1.06 7.18 -39.58 -0.28 -1.35 16 24 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 27 C -0.12 -0.95 9.08 -39.58 -0.36 -1.31 16 28 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 29 H 0.08 0.89 5.88 -51.93 -0.31 0.59 16 30 H 0.05 0.45 7.52 -51.93 -0.39 0.06 16 31 H 0.06 0.60 5.53 -51.93 -0.29 0.31 16 32 H 0.06 0.75 5.92 -51.93 -0.31 0.45 16 33 H 0.06 0.74 7.73 -51.93 -0.40 0.33 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 36 H 0.38 1.66 9.12 45.56 0.42 2.08 16 37 H 0.08 1.05 4.78 -51.93 -0.25 0.80 16 38 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 39 H 0.40 4.51 5.83 -40.82 -0.24 4.27 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.13 1.25 5.56 -52.49 -0.29 0.96 16 46 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 49 H 0.12 0.78 8.00 -52.49 -0.42 0.36 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -35.37 380.54 -8.56 -43.93 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.96 Total: 4.16 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.49 Total: -15.16 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.51 Total: -37.53 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.34 Total: -17.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.37 -8.56 -43.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291822931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds