Wall clock time and date at job start Tue Mar 31 2020 13:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.53005 * 109.47407 * 120.00224 * 2 1 3 5 5 O 1.42900 * 109.46778 * 296.43834 * 4 2 1 6 6 C 1.53004 * 109.47050 * 240.00279 * 2 1 3 7 7 H 1.08996 * 109.47233 * 305.43793 * 6 2 1 8 8 C 1.53002 * 109.47142 * 65.44164 * 6 2 1 9 9 N 1.46506 * 109.46985 * 291.40174 * 8 6 2 10 10 C 1.34775 * 120.00188 * 173.44565 * 9 8 6 11 11 O 1.21281 * 120.00045 * 359.97438 * 10 9 8 12 12 C 1.50699 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.52996 * 109.46999 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47360 * 180.02562 * 13 12 10 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00381 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99759 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47137 * 89.99700 * 18 16 14 20 20 H 1.48501 * 109.46772 * 209.99801 * 18 16 14 21 21 H 1.48499 * 109.47198 * 329.99624 * 18 16 14 22 22 C 1.50702 * 109.47092 * 185.43592 * 6 2 1 23 23 C 1.38234 * 120.00175 * 285.46005 * 22 6 2 24 24 C 1.38239 * 119.99716 * 179.81052 * 23 22 6 25 25 C 1.38234 * 120.00018 * 0.39596 * 24 23 22 26 26 C 1.38238 * 120.00311 * 359.85960 * 25 24 23 27 27 C 1.38234 * 119.99518 * 359.95347 * 26 25 24 28 28 H 1.09003 * 109.46894 * 289.62698 * 1 2 3 29 29 H 1.09004 * 109.47142 * 49.62120 * 1 2 3 30 30 H 1.08992 * 109.47436 * 169.62788 * 1 2 3 31 31 H 1.08999 * 109.47068 * 175.80139 * 3 2 1 32 32 H 1.08997 * 109.47609 * 295.80456 * 3 2 1 33 33 H 1.09005 * 109.46995 * 55.80959 * 3 2 1 34 34 H 1.08994 * 109.46756 * 56.43935 * 4 2 1 35 35 H 1.08994 * 109.47109 * 176.43913 * 4 2 1 36 36 H 0.96702 * 113.99175 * 179.97438 * 5 4 2 37 37 H 1.08998 * 109.47350 * 51.39397 * 8 6 2 38 38 H 1.08992 * 109.47631 * 171.40024 * 8 6 2 39 39 H 0.97007 * 119.99366 * 353.43728 * 9 8 6 40 40 H 1.09000 * 109.47307 * 300.00127 * 12 10 9 41 41 H 1.09001 * 109.46664 * 60.00316 * 12 10 9 42 42 H 1.09000 * 109.47401 * 300.00322 * 13 12 10 43 43 H 1.09006 * 109.47295 * 60.00436 * 13 12 10 44 44 H 0.97002 * 119.99769 * 180.02562 * 17 16 14 45 45 H 1.07996 * 120.00478 * 359.97438 * 23 22 6 46 46 H 1.08004 * 119.99784 * 180.23189 * 24 23 22 47 47 H 1.07998 * 119.99846 * 179.83152 * 25 24 23 48 48 H 1.07994 * 120.00507 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.00040 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 1.6333 -0.0011 2.4145 6 6 2.0400 -0.7212 -1.2493 7 1 1.5993 -1.7169 -1.2994 8 6 1.6447 0.0748 -2.4948 9 7 0.1915 0.0157 -2.6712 10 6 -0.4015 0.7545 -3.6298 11 8 0.2677 1.4687 -4.3460 12 6 -1.8963 0.6933 -3.8116 13 6 -2.3091 1.6200 -4.9569 14 6 -3.8038 1.5593 -5.1384 15 1 -4.3999 0.9235 -4.5003 16 6 -4.4106 2.3152 -6.1189 17 7 -3.6848 3.0889 -6.8961 18 14 -6.2635 2.2404 -6.3433 19 1 -6.9071 3.2755 -5.4950 20 1 -6.5999 2.4888 -7.7682 21 1 -6.7566 0.8974 -5.9452 22 6 3.5410 -0.8388 -1.1839 23 6 4.3320 0.2709 -1.4153 24 6 5.7087 0.1638 -1.3514 25 6 6.2946 -1.0549 -1.0641 26 6 5.5037 -2.1659 -0.8379 27 6 4.1269 -2.0579 -0.8980 28 1 -0.3633 0.3452 0.9680 29 1 -0.3634 0.6658 -0.7829 30 1 -0.3634 -1.0108 -0.1850 31 1 3.1274 1.4434 0.0752 32 1 1.7394 1.9343 -0.9251 33 1 1.6166 1.9776 0.8501 34 1 1.6256 -1.7288 1.2816 35 1 3.1281 -0.7769 1.2178 36 1 1.9223 -0.4023 3.2455 37 1 1.9542 1.1131 -2.3758 38 1 2.1346 -0.3524 -3.3697 39 1 -0.3438 -0.5554 -2.0982 40 1 -2.1921 -0.3292 -4.0464 41 1 -2.3874 1.0116 -2.8921 42 1 -2.0132 2.6424 -4.7216 43 1 -1.8179 1.3021 -5.8766 44 1 -4.1117 3.6210 -7.5857 45 1 3.8745 1.2222 -1.6434 46 1 6.3267 1.0317 -1.5285 47 1 7.3702 -1.1392 -1.0169 48 1 5.9613 -3.1181 -0.6139 49 1 3.5089 -2.9257 -0.7209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291822931.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:19 Heat of formation + Delta-G solvation = -98.585274 kcal Electronic energy + Delta-G solvation = -27346.908033 eV Core-core repulsion = 23658.401856 eV Total energy + Delta-G solvation = -3688.506177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.67157 -40.32989 -38.79235 -37.00213 -35.55929 -34.72388 -33.03364 -32.58533 -31.86938 -29.44314 -28.35434 -27.62163 -27.15802 -24.77441 -23.51116 -23.01532 -22.19569 -21.23434 -19.73051 -18.80126 -18.33715 -17.73832 -17.29987 -17.06751 -16.76367 -16.44052 -16.18994 -15.98064 -15.60906 -15.51187 -15.19713 -14.70035 -14.36731 -14.27408 -14.13864 -14.10244 -13.65414 -13.47321 -13.36177 -13.26053 -13.11847 -12.83135 -12.77826 -12.59032 -12.47668 -12.35909 -11.90760 -11.81786 -11.73051 -11.63000 -11.55473 -11.29501 -11.20436 -10.79085 -10.70810 -10.56343 -9.92588 -9.75881 -9.55496 -8.17358 -6.31340 0.44984 0.53162 1.42203 1.45160 1.56005 1.74406 2.26796 2.45649 2.88592 3.15607 3.21365 3.64928 3.75471 3.92439 4.07078 4.10000 4.15843 4.18057 4.21966 4.33499 4.34187 4.43721 4.52275 4.56826 4.62017 4.66167 4.69373 4.74591 4.78861 4.84816 4.95076 5.02385 5.04547 5.10694 5.15133 5.18502 5.21751 5.37880 5.46693 5.50502 5.53109 5.62616 5.64475 5.67018 5.72429 5.86504 6.14257 6.18616 6.61620 6.87355 6.97565 7.36703 7.39301 8.95424 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019711 B = 0.002633 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.181354 B =10632.444320 C =11439.284629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.048 4.048 3 C -0.145 4.145 4 C 0.092 3.908 5 O -0.587 6.587 6 C -0.038 4.038 7 H 0.109 0.891 8 C 0.125 3.875 9 N -0.715 5.715 10 C 0.508 3.492 11 O -0.590 6.590 12 C -0.120 4.120 13 C 0.043 3.957 14 C -0.542 4.542 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.974 3.026 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.254 1.254 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.117 4.117 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.042 0.958 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.393 0.607 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.417 0.583 40 H 0.105 0.895 41 H 0.103 0.897 42 H -0.019 1.019 43 H -0.018 1.018 44 H 0.262 0.738 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.144 0.856 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.057 -15.158 21.559 31.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.048 4.048 3 C -0.202 4.202 4 C 0.014 3.986 5 O -0.395 6.395 6 C -0.056 4.056 7 H 0.127 0.873 8 C 0.001 3.999 9 N -0.371 5.371 10 C 0.297 3.703 11 O -0.470 6.470 12 C -0.160 4.160 13 C 0.005 3.995 14 C -0.580 4.580 15 H 0.094 0.906 16 C -0.206 4.206 17 N -0.579 5.579 18 Si 0.798 3.202 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.178 1.178 22 C -0.080 4.080 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.135 4.135 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.243 0.757 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.257 0.743 40 H 0.123 0.877 41 H 0.121 0.879 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.132 0.868 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.162 0.838 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 18.263 -14.169 20.484 30.885 hybrid contribution -0.559 0.192 -0.120 0.603 sum 17.704 -13.977 20.365 30.389 Atomic orbital electron populations 1.22198 0.93959 1.02692 1.02597 1.20449 0.96111 0.95355 0.92871 1.22025 1.01418 0.95896 1.00862 1.22159 0.97880 0.94077 0.84438 1.86444 1.80707 1.55218 1.17111 1.20347 0.92304 1.00379 0.92620 0.87323 1.21451 0.80472 1.00768 0.97209 1.46304 1.08411 1.46597 1.35823 1.21337 0.91455 0.78498 0.79039 1.90654 1.67197 1.42176 1.46998 1.21644 0.89654 1.03006 1.01671 1.18677 0.95091 0.93272 0.92461 1.21722 0.93155 1.25927 1.17170 0.90551 1.26153 1.04144 0.94810 0.95446 1.70184 1.37926 1.28556 1.21188 0.85318 0.78417 0.79324 0.77168 1.19735 1.21202 1.17813 1.19611 0.93945 0.94148 1.00327 1.21270 0.94388 0.98654 1.00463 1.21375 0.94678 0.98797 1.00071 1.21449 1.00973 0.92744 0.99453 1.21441 0.93655 0.99451 0.99547 1.21285 0.95525 0.96835 0.99835 0.92120 0.92468 0.90517 0.91739 0.93895 0.92884 0.92056 0.93316 0.75740 0.92020 0.92927 0.74295 0.87698 0.87862 1.00085 0.99997 0.92889 0.86761 0.85307 0.84402 0.83846 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 6.90 71.98 0.50 -2.36 16 2 C -0.05 -0.83 0.41 -52.18 -0.02 -0.85 16 3 C -0.15 -3.16 6.74 71.98 0.49 -2.68 16 4 C 0.09 1.27 5.58 71.98 0.40 1.68 16 5 O -0.59 -9.00 12.24 -148.98 -1.82 -10.83 16 6 C -0.04 -0.64 1.70 -11.54 -0.02 -0.66 16 7 H 0.11 1.40 7.91 -2.39 -0.02 1.38 16 8 C 0.12 3.13 4.23 86.38 0.37 3.50 16 9 N -0.71 -19.46 3.71 -463.06 -1.72 -21.18 16 10 C 0.51 20.02 7.83 87.66 0.69 20.71 16 11 O -0.59 -29.70 15.96 -3.03 -0.05 -29.75 16 12 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 13 C 0.04 2.42 4.26 29.85 0.13 2.55 16 14 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 16 C -0.01 -0.49 5.46 84.66 0.46 -0.02 16 17 N -0.94 -60.39 13.29 21.45 0.28 -60.11 16 18 Si 0.97 44.76 29.54 68.60 2.03 46.79 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 22 C -0.08 -1.34 3.39 -19.86 -0.07 -1.41 16 23 C -0.13 -2.49 7.18 22.27 0.16 -2.33 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.12 -1.52 10.05 22.27 0.22 -1.30 16 27 C -0.12 -1.55 9.08 22.27 0.20 -1.35 16 28 H 0.06 1.20 7.52 -2.39 -0.02 1.19 16 29 H 0.06 1.26 5.88 -2.38 -0.01 1.25 16 30 H 0.08 1.02 7.52 -2.39 -0.02 1.00 16 31 H 0.06 1.32 5.53 -2.39 -0.01 1.31 16 32 H 0.04 1.09 5.92 -2.39 -0.01 1.08 16 33 H 0.05 1.25 7.73 -2.38 -0.02 1.23 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.68 6.56 -2.39 -0.02 0.67 16 36 H 0.39 2.57 9.12 -74.06 -0.68 1.90 16 37 H 0.06 1.79 4.78 -2.39 -0.01 1.78 16 38 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 39 H 0.42 8.46 5.83 -92.70 -0.54 7.92 16 40 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 41 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 42 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 43 H -0.02 -1.18 8.10 -2.38 -0.02 -1.20 16 44 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.11 2.42 5.56 -2.91 -0.02 2.41 16 46 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 48 H 0.14 1.07 8.06 -2.91 -0.02 1.04 16 49 H 0.14 1.24 8.00 -2.91 -0.02 1.21 16 Total: -1.00 -80.99 380.54 2.82 -78.17 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.26 Total: 20.64 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.35 Total: -23.74 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.43 Total: -81.29 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.87 Total: -40.58 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -80.99 2.82 -78.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291822931.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.415 kcal (2) G-P(sol) polarization free energy of solvation -80.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds