Wall clock time and date at job start Tue Mar 31 2020 13:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99907 * 2 1 4 4 C 1.53000 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47486 * 59.99698 * 4 3 2 6 6 C 1.53011 * 109.47083 * 300.00146 * 4 3 2 7 7 N 1.46498 * 109.47447 * 180.02562 * 4 3 2 8 8 C 1.46499 * 119.99381 * 359.97438 * 7 4 3 9 9 C 1.34776 * 120.00231 * 179.97438 * 7 4 3 10 10 O 1.21279 * 119.99707 * 0.02562 * 9 7 4 11 11 C 1.50702 * 119.99692 * 180.27214 * 9 7 4 12 12 C 1.52995 * 109.46828 * 179.72573 * 11 9 7 13 13 H 1.09003 * 109.47418 * 304.99846 * 12 11 9 14 14 C 1.50696 * 109.47173 * 65.00132 * 12 11 9 15 15 H 1.07999 * 120.00108 * 234.67591 * 14 12 11 16 16 C 1.37877 * 119.99887 * 54.68187 * 14 12 11 17 17 N 1.31510 * 120.00333 * 4.86473 * 16 14 12 18 18 Si 1.86805 * 119.99822 * 184.86976 * 16 14 12 19 19 H 1.48502 * 109.46988 * 89.99496 * 18 16 14 20 20 H 1.48500 * 109.47011 * 209.99714 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00001 * 18 16 14 22 22 C 1.50702 * 109.47088 * 185.00271 * 12 11 9 23 23 C 1.38238 * 120.00206 * 151.48420 * 22 12 11 24 24 C 1.38234 * 120.00102 * 179.78738 * 23 22 12 25 25 C 1.38234 * 119.99735 * 0.44057 * 24 23 22 26 26 C 1.38236 * 120.00405 * 359.81283 * 25 24 23 27 27 C 1.38233 * 119.99814 * 331.75953 * 22 12 11 28 28 H 1.08996 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 299.99954 * 1 2 3 30 30 H 1.08996 * 109.46772 * 60.00206 * 1 2 3 31 31 H 1.08994 * 109.46805 * 60.00012 * 3 2 1 32 32 H 1.08995 * 109.46834 * 299.99993 * 3 2 1 33 33 H 1.08995 * 109.47641 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47164 * 300.00794 * 5 4 3 35 35 H 1.09008 * 109.46657 * 59.99568 * 5 4 3 36 36 H 1.09001 * 109.46658 * 299.99811 * 6 4 3 37 37 H 1.08992 * 109.46871 * 59.99839 * 6 4 3 38 38 H 1.09001 * 109.46782 * 180.02562 * 6 4 3 39 39 H 1.09002 * 109.47032 * 269.99715 * 8 7 4 40 40 H 1.08997 * 109.47585 * 30.00018 * 8 7 4 41 41 H 1.09005 * 109.46920 * 150.00472 * 8 7 4 42 42 H 1.08994 * 109.47448 * 299.72663 * 11 9 7 43 43 H 1.09002 * 109.46800 * 59.72409 * 11 9 7 44 44 H 0.96993 * 120.00386 * 180.02562 * 17 16 14 45 45 H 1.08005 * 119.99666 * 0.02562 * 23 22 12 46 46 H 1.08000 * 119.99950 * 180.27835 * 24 23 22 47 47 H 1.08005 * 120.00047 * 179.83278 * 25 24 23 48 48 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.00507 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 3.9865 0.4257 -1.2501 6 6 3.9875 0.4252 1.2483 7 7 4.1314 2.5231 0.0000 8 6 3.2702 3.7082 0.0005 9 6 5.4717 2.6639 0.0001 10 8 6.1846 1.6827 -0.0008 11 6 6.0846 4.0407 0.0069 12 6 7.6098 3.9199 0.0125 13 1 7.9222 3.3009 0.8536 14 6 8.0682 3.2858 -1.2754 15 1 8.6902 2.4033 -1.2514 16 6 7.6936 3.8325 -2.4845 17 7 7.0172 4.9599 -2.5151 18 14 8.1466 2.9715 -4.0792 19 1 7.0661 2.0245 -4.4547 20 1 8.3167 3.9805 -5.1554 21 1 9.4170 2.2251 -3.8952 22 6 8.2218 5.2908 0.1432 23 6 9.4576 5.4417 0.7441 24 6 10.0209 6.6987 0.8601 25 6 9.3445 7.8059 0.3833 26 6 8.1064 7.6557 -0.2129 27 6 7.5449 6.3981 -0.3327 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0730 0.3392 -1.2504 34 1 3.5431 -0.5701 -1.2502 35 1 3.6644 0.9667 -2.1399 36 1 3.6662 0.9660 2.1385 37 1 3.5441 -0.5705 1.2483 38 1 5.0741 0.3396 1.2481 39 1 3.0567 4.0026 -1.0271 40 1 2.3366 3.4788 0.5141 41 1 3.7766 4.5251 0.5146 42 1 5.7665 4.5845 -0.8825 43 1 5.7594 4.5787 0.8974 44 1 6.7534 5.3443 -3.3656 45 1 9.9846 4.5769 1.1196 46 1 10.9884 6.8160 1.3255 47 1 9.7834 8.7883 0.4763 48 1 7.5776 8.5207 -0.5851 49 1 6.5777 6.2808 -0.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345466581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:08 Heat of formation + Delta-G solvation = -45.064474 kcal Electronic energy + Delta-G solvation = -28454.255839 eV Core-core repulsion = 24768.070498 eV Total energy + Delta-G solvation = -3686.185341 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.85470 -38.36371 -37.76084 -35.60419 -34.15030 -32.48852 -30.97717 -29.80041 -28.29170 -27.86858 -26.87690 -26.42350 -25.63306 -25.00488 -22.73821 -21.49096 -20.61085 -19.35311 -17.76843 -16.80732 -16.52712 -15.98712 -15.93235 -15.64200 -15.15611 -14.98150 -14.60989 -14.39906 -13.82735 -13.70251 -13.44219 -13.07251 -12.86776 -12.80351 -12.37748 -12.20419 -12.19583 -11.99613 -11.72836 -11.59068 -11.54604 -11.41459 -11.31532 -11.20093 -10.88705 -10.85536 -10.70356 -10.49787 -10.34870 -10.14365 -9.92061 -9.78399 -9.26974 -9.12633 -8.60457 -8.31853 -8.02733 -7.79018 -7.42268 -5.95285 -4.04430 2.51115 2.59855 3.25154 3.33268 3.38787 3.44569 3.71635 3.99656 4.45772 4.84802 4.95628 4.99048 5.17733 5.19174 5.22224 5.27598 5.35424 5.47715 5.49943 5.64386 5.79392 5.82583 5.84797 5.93280 5.98997 6.03312 6.11050 6.17003 6.23520 6.32803 6.38988 6.46174 6.60475 6.67681 6.74063 6.79371 6.81715 6.96497 7.14699 7.16854 7.25539 7.29903 7.49505 7.56389 7.70452 7.95774 8.07328 8.19464 8.19961 8.37608 8.92230 9.23346 9.58676 10.98920 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004145 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.345832 B = 6753.598481 C = 7586.525741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.181 3.819 5 C -0.156 4.156 6 C -0.155 4.155 7 N -0.626 5.626 8 C 0.077 3.923 9 C 0.531 3.469 10 O -0.517 6.517 11 C -0.135 4.135 12 C 0.088 3.912 13 H 0.037 0.963 14 C -0.467 4.467 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.275 1.275 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.132 0.868 43 H 0.051 0.949 44 H 0.259 0.741 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 -0.869 5.772 13.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.013 4.013 4 C 0.097 3.903 5 C -0.214 4.214 6 C -0.213 4.213 7 N -0.365 5.365 8 C -0.067 4.067 9 C 0.321 3.679 10 O -0.391 6.391 11 C -0.175 4.175 12 C 0.068 3.932 13 H 0.055 0.945 14 C -0.505 4.505 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.200 1.200 22 C -0.027 4.027 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.087 4.087 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.229 -1.472 5.618 12.642 hybrid contribution -0.085 0.075 -1.251 1.256 sum -11.314 -1.397 4.368 12.208 Atomic orbital electron populations 1.22727 0.81226 1.02624 0.99844 1.87867 1.19318 1.27466 1.95354 1.22805 0.93680 0.84673 1.00188 1.20032 0.89623 0.83674 0.97014 1.22132 1.04267 0.99391 0.95649 1.22131 1.03985 0.99609 0.95552 1.48128 1.06665 1.04682 1.77030 1.21755 0.94762 0.88591 1.01561 1.21059 0.79778 0.93058 0.73963 1.90545 1.60070 1.40865 1.47649 1.21965 0.99744 0.92458 1.03374 1.17645 0.89370 0.89144 0.97002 0.94483 1.20968 1.30242 1.09935 0.89333 0.92293 1.24859 0.95557 0.94602 0.98830 1.69669 1.40012 1.17940 1.25351 0.86608 0.78967 0.79290 0.83319 1.20857 1.21505 1.20016 1.20350 0.93661 0.96550 0.92159 1.20902 0.96393 0.96104 1.01613 1.20796 0.99159 0.93337 1.02691 1.20762 0.96422 0.97352 1.02741 1.21046 0.96192 0.97566 1.01369 1.21351 1.01710 0.90528 0.95089 0.89665 0.94218 0.94176 0.92874 0.92853 0.89763 0.91975 0.93385 0.93529 0.91806 0.90029 0.93046 0.92136 0.90614 0.85040 0.93109 0.93025 0.87676 0.88122 0.88335 0.88124 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.82 9.35 -35.23 -0.33 -5.15 16 3 C 0.06 0.80 3.57 37.16 0.13 0.94 16 4 C 0.18 2.86 0.87 -131.81 -0.11 2.75 16 5 C -0.16 -2.72 8.26 37.16 0.31 -2.41 16 6 C -0.15 -2.43 8.25 37.16 0.31 -2.13 16 7 N -0.63 -10.66 2.82 -166.59 -0.47 -11.13 16 8 C 0.08 1.02 9.40 59.85 0.56 1.59 16 9 C 0.53 11.12 6.84 -10.99 -0.08 11.04 16 10 O -0.52 -12.33 11.19 5.56 0.06 -12.27 16 11 C -0.14 -2.87 2.63 -27.88 -0.07 -2.94 16 12 C 0.09 2.08 1.97 -92.93 -0.18 1.90 16 13 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 14 C -0.47 -12.44 7.27 -34.44 -0.25 -12.69 16 15 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 16 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 17 N -0.89 -22.54 7.99 55.43 0.44 -22.10 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.03 -0.60 4.69 -104.62 -0.49 -1.10 16 23 C -0.13 -2.82 9.71 -39.58 -0.38 -3.20 16 24 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 25 C -0.15 -2.91 10.05 -39.58 -0.40 -3.30 16 26 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 27 C -0.07 -1.49 7.45 -39.58 -0.30 -1.78 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.60 6.88 -51.93 -0.36 0.24 16 32 H 0.05 0.65 7.78 -51.93 -0.40 0.24 16 33 H 0.08 1.73 6.17 -51.93 -0.32 1.41 16 34 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 38 H 0.08 1.50 6.17 -51.93 -0.32 1.18 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.64 5.76 -51.93 -0.30 0.34 16 41 H 0.08 0.98 6.43 -51.93 -0.33 0.64 16 42 H 0.13 2.96 4.67 -51.93 -0.24 2.71 16 43 H 0.05 0.96 7.40 -51.93 -0.38 0.58 16 44 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 45 H 0.11 2.14 8.06 -52.48 -0.42 1.71 16 46 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 48 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 49 H 0.14 3.07 5.18 -52.49 -0.27 2.80 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -28.92 376.32 -8.29 -37.21 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -7.92 Total: 6.00 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -0.73 Total: -14.78 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: -0.03 Total: -33.24 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.27 Total: -17.42 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.92 -8.29 -37.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345466581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.856 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds