Wall clock time and date at job start Tue Mar 31 2020 13:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99907 * 2 1 4 4 C 1.53000 * 109.47143 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47486 * 59.99698 * 4 3 2 6 6 C 1.53011 * 109.47083 * 300.00146 * 4 3 2 7 7 N 1.46498 * 109.47447 * 180.02562 * 4 3 2 8 8 C 1.46499 * 119.99381 * 359.97438 * 7 4 3 9 9 C 1.34776 * 120.00231 * 179.97438 * 7 4 3 10 10 O 1.21279 * 119.99707 * 0.02562 * 9 7 4 11 11 C 1.50702 * 119.99692 * 180.27214 * 9 7 4 12 12 C 1.52995 * 109.46828 * 179.72573 * 11 9 7 13 13 H 1.09003 * 109.47418 * 304.99846 * 12 11 9 14 14 C 1.50696 * 109.47173 * 65.00132 * 12 11 9 15 15 H 1.07999 * 120.00108 * 234.67591 * 14 12 11 16 16 C 1.37877 * 119.99887 * 54.68187 * 14 12 11 17 17 N 1.31510 * 120.00333 * 4.86473 * 16 14 12 18 18 Si 1.86805 * 119.99822 * 184.86976 * 16 14 12 19 19 H 1.48502 * 109.46988 * 89.99496 * 18 16 14 20 20 H 1.48500 * 109.47011 * 209.99714 * 18 16 14 21 21 H 1.48497 * 109.47162 * 330.00001 * 18 16 14 22 22 C 1.50702 * 109.47088 * 185.00271 * 12 11 9 23 23 C 1.38238 * 120.00206 * 151.48420 * 22 12 11 24 24 C 1.38234 * 120.00102 * 179.78738 * 23 22 12 25 25 C 1.38234 * 119.99735 * 0.44057 * 24 23 22 26 26 C 1.38236 * 120.00405 * 359.81283 * 25 24 23 27 27 C 1.38233 * 119.99814 * 331.75953 * 22 12 11 28 28 H 1.08996 * 109.46795 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46922 * 299.99954 * 1 2 3 30 30 H 1.08996 * 109.46772 * 60.00206 * 1 2 3 31 31 H 1.08994 * 109.46805 * 60.00012 * 3 2 1 32 32 H 1.08995 * 109.46834 * 299.99993 * 3 2 1 33 33 H 1.08995 * 109.47641 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47164 * 300.00794 * 5 4 3 35 35 H 1.09008 * 109.46657 * 59.99568 * 5 4 3 36 36 H 1.09001 * 109.46658 * 299.99811 * 6 4 3 37 37 H 1.08992 * 109.46871 * 59.99839 * 6 4 3 38 38 H 1.09001 * 109.46782 * 180.02562 * 6 4 3 39 39 H 1.09002 * 109.47032 * 269.99715 * 8 7 4 40 40 H 1.08997 * 109.47585 * 30.00018 * 8 7 4 41 41 H 1.09005 * 109.46920 * 150.00472 * 8 7 4 42 42 H 1.08994 * 109.47448 * 299.72663 * 11 9 7 43 43 H 1.09002 * 109.46800 * 59.72409 * 11 9 7 44 44 H 0.96993 * 120.00386 * 180.02562 * 17 16 14 45 45 H 1.08005 * 119.99666 * 0.02562 * 23 22 12 46 46 H 1.08000 * 119.99950 * 180.27835 * 24 23 22 47 47 H 1.08005 * 120.00047 * 179.83278 * 25 24 23 48 48 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.00507 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 3.9865 0.4257 -1.2501 6 6 3.9875 0.4252 1.2483 7 7 4.1314 2.5231 0.0000 8 6 3.2702 3.7082 0.0005 9 6 5.4717 2.6639 0.0001 10 8 6.1846 1.6827 -0.0008 11 6 6.0846 4.0407 0.0069 12 6 7.6098 3.9199 0.0125 13 1 7.9222 3.3009 0.8536 14 6 8.0682 3.2858 -1.2754 15 1 8.6902 2.4033 -1.2514 16 6 7.6936 3.8325 -2.4845 17 7 7.0172 4.9599 -2.5151 18 14 8.1466 2.9715 -4.0792 19 1 7.0661 2.0245 -4.4547 20 1 8.3167 3.9805 -5.1554 21 1 9.4170 2.2251 -3.8952 22 6 8.2218 5.2908 0.1432 23 6 9.4576 5.4417 0.7441 24 6 10.0209 6.6987 0.8601 25 6 9.3445 7.8059 0.3833 26 6 8.1064 7.6557 -0.2129 27 6 7.5449 6.3981 -0.3327 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.0730 0.3392 -1.2504 34 1 3.5431 -0.5701 -1.2502 35 1 3.6644 0.9667 -2.1399 36 1 3.6662 0.9660 2.1385 37 1 3.5441 -0.5705 1.2483 38 1 5.0741 0.3396 1.2481 39 1 3.0567 4.0026 -1.0271 40 1 2.3366 3.4788 0.5141 41 1 3.7766 4.5251 0.5146 42 1 5.7665 4.5845 -0.8825 43 1 5.7594 4.5787 0.8974 44 1 6.7534 5.3443 -3.3656 45 1 9.9846 4.5769 1.1196 46 1 10.9884 6.8160 1.3255 47 1 9.7834 8.7883 0.4763 48 1 7.5776 8.5207 -0.5851 49 1 6.5777 6.2808 -0.7986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345466581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:04 Heat of formation + Delta-G solvation = -59.819903 kcal Electronic energy + Delta-G solvation = -28454.895683 eV Core-core repulsion = 24768.070498 eV Total energy + Delta-G solvation = -3686.825184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.28230 -39.87634 -38.95399 -36.97210 -35.92564 -33.86990 -32.80645 -31.38458 -29.91129 -28.88381 -28.23046 -27.80214 -27.07600 -26.07439 -24.47294 -23.06081 -22.07041 -20.96968 -19.25782 -18.22839 -17.88107 -17.63471 -17.01842 -16.96267 -16.81967 -16.31995 -16.10498 -15.63778 -15.37256 -15.25750 -14.89475 -14.45545 -14.36239 -14.26615 -13.76880 -13.60170 -13.39150 -13.37761 -13.26421 -13.10123 -13.02809 -12.82363 -12.77285 -12.65200 -12.59181 -12.35566 -12.24919 -12.02387 -11.84824 -11.69325 -11.65937 -11.04363 -10.99737 -10.63397 -10.49886 -10.03466 -9.42727 -9.38276 -9.10122 -7.93234 -6.07875 0.90370 1.01725 1.34636 1.37636 1.45644 2.01759 2.11857 2.45155 3.00238 3.21335 3.39217 3.73653 3.86618 4.09018 4.20830 4.28724 4.35465 4.40685 4.43937 4.50617 4.54173 4.58564 4.61427 4.67866 4.75649 4.80412 4.80950 4.84444 4.89511 4.90417 4.92541 4.96229 5.00167 5.10978 5.16194 5.31875 5.37396 5.42872 5.55604 5.65937 5.69258 5.87057 5.92167 5.96613 6.11129 6.21420 6.38363 6.44315 6.59843 6.69154 6.86088 7.53783 7.65611 8.95953 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015211 B = 0.004145 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.345832 B = 6753.598481 C = 7586.525741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.074 3.926 4 C 0.174 3.826 5 C -0.149 4.149 6 C -0.146 4.146 7 N -0.621 5.621 8 C 0.069 3.931 9 C 0.522 3.478 10 O -0.557 6.557 11 C -0.123 4.123 12 C 0.089 3.911 13 H 0.013 0.987 14 C -0.486 4.486 15 H 0.025 0.975 16 C 0.038 3.962 17 N -0.883 5.883 18 Si 0.924 3.076 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.286 1.286 22 C -0.051 4.051 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.080 4.080 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.071 0.929 44 H 0.261 0.739 45 H 0.101 0.899 46 H 0.131 0.869 47 H 0.136 0.864 48 H 0.127 0.873 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 1.271 6.187 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.323 6.323 3 C -0.003 4.003 4 C 0.090 3.910 5 C -0.208 4.208 6 C -0.204 4.204 7 N -0.358 5.358 8 C -0.073 4.073 9 C 0.313 3.687 10 O -0.435 6.435 11 C -0.163 4.163 12 C 0.070 3.930 13 H 0.031 0.969 14 C -0.524 4.524 15 H 0.044 0.956 16 C -0.161 4.161 17 N -0.522 5.522 18 Si 0.752 3.248 19 H -0.214 1.214 20 H -0.203 1.203 21 H -0.211 1.211 22 C -0.051 4.051 23 C -0.171 4.171 24 C -0.158 4.158 25 C -0.167 4.167 26 C -0.165 4.165 27 C -0.098 4.098 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.119 0.881 46 H 0.149 0.851 47 H 0.154 0.846 48 H 0.145 0.855 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.179 0.699 6.034 14.511 hybrid contribution 0.503 -0.599 -1.339 1.551 sum -12.676 0.100 4.695 13.518 Atomic orbital electron populations 1.22948 0.79073 1.03927 1.01010 1.87832 1.21600 1.27288 1.95581 1.22640 0.90712 0.85304 1.01656 1.20152 0.92237 0.82709 0.95910 1.22029 1.01589 1.00538 0.96603 1.22014 1.01689 1.00511 0.96212 1.48081 1.05810 1.06545 1.75349 1.22040 0.95602 0.87236 1.02450 1.21093 0.81198 0.92427 0.74016 1.90539 1.61576 1.41784 1.49584 1.21758 0.97918 0.92874 1.03717 1.17529 0.91235 0.89619 0.94651 0.96894 1.20907 1.30742 1.09483 0.91308 0.95646 1.25148 0.95887 0.95250 0.99830 1.69743 1.39497 1.17509 1.25483 0.86096 0.77996 0.78733 0.81954 1.21423 1.20305 1.21128 1.20315 0.94631 0.96160 0.94032 1.21076 0.96325 0.97383 1.02310 1.21147 1.00263 0.92436 1.01975 1.21196 0.95755 0.98810 1.00926 1.21371 0.96765 0.97465 1.00851 1.21311 1.01619 0.91232 0.95651 0.88442 0.92696 0.93287 0.90659 0.91962 0.93778 0.90679 0.93838 0.92190 0.90790 0.93499 0.92704 0.88465 0.90240 0.85963 0.91058 0.92915 0.88079 0.85113 0.84643 0.85505 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -9.19 9.35 -148.98 -1.39 -10.58 16 3 C 0.07 1.67 3.57 71.98 0.26 1.92 16 4 C 0.17 5.41 0.87 3.61 0.00 5.42 16 5 C -0.15 -5.32 8.26 71.98 0.59 -4.73 16 6 C -0.15 -4.61 8.25 71.99 0.59 -4.01 16 7 N -0.62 -20.94 2.82 -799.36 -2.26 -23.20 16 8 C 0.07 1.68 9.40 127.77 1.20 2.88 16 9 C 0.52 22.64 6.84 87.66 0.60 23.24 16 10 O -0.56 -28.38 11.19 -3.03 -0.03 -28.41 16 11 C -0.12 -5.32 2.63 29.85 0.08 -5.24 16 12 C 0.09 4.43 1.97 -12.29 -0.02 4.41 16 13 H 0.01 0.67 7.91 -2.39 -0.02 0.65 16 14 C -0.49 -27.27 7.27 25.60 0.19 -27.08 16 15 H 0.03 1.54 7.82 -2.91 -0.02 1.52 16 16 C 0.04 2.05 5.12 84.66 0.43 2.49 16 17 N -0.88 -44.94 7.99 21.45 0.17 -44.77 16 18 Si 0.92 45.12 29.54 68.60 2.03 47.15 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 22 C -0.05 -2.35 4.69 -19.87 -0.09 -2.44 16 23 C -0.15 -6.56 9.71 22.27 0.22 -6.34 16 24 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 25 C -0.15 -5.09 10.05 22.27 0.22 -4.86 16 26 C -0.15 -5.41 10.05 22.27 0.22 -5.18 16 27 C -0.08 -3.41 7.45 22.27 0.17 -3.25 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.38 6.88 -2.39 -0.02 1.36 16 32 H 0.06 1.31 7.78 -2.39 -0.02 1.29 16 33 H 0.04 1.92 6.17 -2.39 -0.01 1.91 16 34 H 0.07 2.40 7.68 -2.39 -0.02 2.38 16 35 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 2.13 7.68 -2.39 -0.02 2.12 16 38 H 0.05 1.81 6.17 -2.39 -0.01 1.79 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.67 5.76 -2.39 -0.01 1.66 16 41 H 0.08 1.90 6.43 -2.38 -0.02 1.89 16 42 H 0.12 5.57 4.67 -2.39 -0.01 5.56 16 43 H 0.07 2.72 7.40 -2.39 -0.02 2.70 16 44 H 0.26 12.87 8.31 -92.71 -0.77 12.10 16 45 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 46 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 47 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 48 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 49 H 0.13 5.73 5.18 -2.91 -0.02 5.72 16 Total: -1.00 -65.66 376.32 5.57 -60.09 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 0.92 Total: 25.74 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 6.13 Total: -26.03 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -2.09 Total: -67.96 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -1.43 Total: -38.99 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.66 5.57 -60.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345466581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.275 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds