Wall clock time and date at job start Tue Mar 31 2020 14:30:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.45197 * 109.46861 * 2 1
4 4 C 1.34231 * 117.00013 * 179.97438 * 3 2 1
5 5 O 1.20829 * 119.99823 * 359.97438 * 4 3 2
6 6 C 1.50702 * 120.00293 * 180.02562 * 4 3 2
7 7 H 1.08997 * 109.47081 * 59.99726 * 6 4 3
8 8 N 1.46901 * 109.47121 * 180.02562 * 6 4 3
9 9 C 1.46904 * 110.99802 * 204.99709 * 8 6 4
10 10 C 1.50704 * 109.47113 * 179.97438 * 9 8 6
11 11 C 1.38634 * 119.74839 * 269.73165 * 10 9 8
12 12 C 1.37619 * 120.24294 * 179.72398 * 11 10 9
13 13 C 1.40720 * 119.74615 * 0.56381 * 12 11 10
14 14 C 1.41392 * 120.24340 * 179.68137 * 13 12 11
15 15 H 1.07999 * 120.00216 * 24.41557 * 14 13 12
16 16 C 1.39941 * 120.00039 * 204.40587 * 14 13 12
17 17 N 1.30821 * 120.00054 * 17.87073 * 16 14 13
18 18 Si 1.86800 * 120.00114 * 197.87041 * 16 14 13
19 19 H 1.48494 * 109.47296 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47304 * 120.00255 * 18 16 14
21 21 H 1.48501 * 109.47160 * 240.00002 * 18 16 14
22 22 C 1.40714 * 119.50918 * 359.71205 * 13 12 11
23 23 C 1.37622 * 119.74661 * 359.97438 * 22 13 12
24 24 C 1.52999 * 109.46811 * 299.99911 * 6 4 3
25 25 H 1.09001 * 109.47046 * 185.00043 * 24 6 4
26 26 C 1.52994 * 109.47299 * 65.00065 * 24 6 4
27 27 C 1.53005 * 109.47124 * 304.99939 * 24 6 4
28 28 C 1.53001 * 109.46945 * 185.00153 * 27 24 6
29 29 H 1.08999 * 109.47465 * 60.00170 * 1 2 3
30 30 H 1.08998 * 109.47194 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47540 * 299.99952 * 1 2 3
32 32 H 1.09000 * 109.47540 * 240.00048 * 2 1 3
33 33 H 1.08999 * 109.47465 * 119.99830 * 2 1 3
34 34 H 1.00898 * 111.00484 * 81.04615 * 8 6 4
35 35 H 1.08994 * 109.47076 * 300.00212 * 9 8 6
36 36 H 1.09004 * 109.46857 * 60.00366 * 9 8 6
37 37 H 1.07996 * 119.87653 * 359.97175 * 11 10 9
38 38 H 1.08003 * 120.12565 * 180.27913 * 12 11 10
39 39 H 0.97003 * 120.00559 * 180.02562 * 17 16 14
40 40 H 1.07999 * 120.12544 * 179.97438 * 22 13 12
41 41 H 1.07999 * 119.87177 * 180.02562 * 23 22 13
42 42 H 1.09001 * 109.47053 * 299.99973 * 26 24 6
43 43 H 1.08998 * 109.47492 * 59.99583 * 26 24 6
44 44 H 1.08999 * 109.47338 * 180.02562 * 26 24 6
45 45 H 1.09001 * 109.47154 * 305.00083 * 27 24 6
46 46 H 1.08994 * 109.47238 * 65.00262 * 27 24 6
47 47 H 1.09001 * 109.47137 * 299.99940 * 28 27 24
48 48 H 1.09008 * 109.47314 * 60.00045 * 28 27 24
49 49 H 1.09004 * 109.46992 * 179.97438 * 28 27 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3446 1.5449 0.0005
5 8 4.0807 0.5867 0.0015
6 6 3.9206 2.9375 0.0012
7 1 3.5843 3.4694 0.8911
8 7 5.3876 2.8606 0.0010
9 6 5.9784 4.0741 0.5811
10 6 7.4809 3.9586 0.5646
11 6 8.1401 3.4028 1.6502
12 6 9.5114 3.2872 1.6435
13 6 10.2454 3.7467 0.5343
14 6 11.6552 3.6392 0.5192
15 1 12.1461 2.8894 1.1217
16 6 12.4143 4.5044 -0.2768
17 7 11.8855 5.6136 -0.7256
18 14 14.1829 4.0755 -0.6984
19 1 14.5396 2.7765 -0.0736
20 1 14.3292 3.9719 -2.1725
21 1 15.0856 5.1369 -0.1847
22 6 9.5660 4.3143 -0.5595
23 6 8.1937 4.4139 -0.5338
24 6 3.4495 3.6847 -1.2481
25 1 3.9358 4.6592 -1.2936
26 6 1.9326 3.8741 -1.1873
27 6 3.8129 2.8747 -2.4942
28 6 3.4547 3.6775 -3.7466
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 5.7411 2.6957 -0.9295
35 1 5.6738 4.9418 -0.0039
36 1 5.6346 4.1899 1.6090
37 1 7.5751 3.0556 2.5025
38 1 10.0227 2.8498 2.4883
39 1 12.4116 6.2132 -1.2776
40 1 10.1195 4.6705 -1.4157
41 1 7.6701 4.8488 -1.3723
42 1 1.4463 2.8997 -1.1418
43 1 1.6737 4.4511 -0.2996
44 1 1.5969 4.4061 -2.0775
45 1 4.8822 2.6638 -2.4914
46 1 3.2575 1.9369 -2.4927
47 1 2.3853 3.8884 -3.7494
48 1 4.0101 4.6154 -3.7481
49 1 3.7140 3.1006 -4.6344
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000347785252.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:49
Heat of formation + Delta-G solvation = -86.729679 kcal
Electronic energy + Delta-G solvation = -27015.942822 eV
Core-core repulsion = 23327.950742 eV
Total energy + Delta-G solvation = -3687.992080 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.38 seconds
Orbital eigenvalues (eV)
-40.70009 -38.18319 -37.30026 -36.41118 -34.53927 -33.31040 -31.95191 -30.71658
-29.61959 -29.21471 -27.37817 -25.39301 -24.49046 -23.25580 -22.79981 -21.51067
-20.97500 -19.94712 -19.65945 -17.44051 -17.27567 -16.96796 -16.32781 -15.61515
-15.20166 -15.08716 -14.70468 -14.27567 -14.01363 -13.82277 -13.56298 -13.49549
-13.33922 -12.98234 -12.81770 -12.56628 -12.45856 -12.18427 -12.06875 -11.96643
-11.91987 -11.78038 -11.58795 -11.44307 -11.07402 -11.04178 -10.95642 -10.76525
-10.67953 -10.54098 -10.48062 -10.36708 -10.13524 -9.55452 -9.37911 -9.11853
-8.13408 -7.42858 -7.28399 -6.75834 -4.33483 2.37177 2.51999 2.78353
3.07706 3.11607 3.13720 3.20003 3.94057 4.40973 4.55018 4.56482
4.69788 4.72595 4.75221 4.82528 4.90039 5.07288 5.24865 5.31820
5.41601 5.43707 5.47299 5.52914 5.55118 5.71246 5.72283 5.79073
5.81538 5.86271 5.92356 5.92816 5.98456 6.18814 6.26728 6.28741
6.37664 6.44359 6.48803 6.96736 7.08859 7.21350 7.29004 7.39997
7.61024 7.65308 7.90021 7.95741 8.07956 8.15327 8.32599 8.66037
8.91527 8.99865 10.18699
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.020883 B = 0.002604 C = 0.002476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.478978 B =10748.242015 C =11305.773008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.058 3.942
3 O -0.359 6.359
4 C 0.465 3.535
5 O -0.484 6.484
6 C 0.100 3.900
7 H 0.111 0.889
8 N -0.665 5.665
9 C 0.128 3.872
10 C -0.216 4.216
11 C -0.065 4.065
12 C -0.228 4.228
13 C 0.113 3.887
14 C -0.461 4.461
15 H 0.078 0.922
16 C 0.076 3.924
17 N -0.793 5.793
18 Si 0.906 3.094
19 H -0.260 1.260
20 H -0.272 1.272
21 H -0.275 1.275
22 C -0.167 4.167
23 C -0.093 4.093
24 C -0.118 4.118
25 H 0.086 0.914
26 C -0.155 4.155
27 C -0.125 4.125
28 C -0.149 4.149
29 H 0.065 0.935
30 H 0.076 0.924
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.067 0.933
34 H 0.350 0.650
35 H 0.025 0.975
36 H 0.064 0.936
37 H 0.087 0.913
38 H 0.091 0.909
39 H 0.279 0.721
40 H 0.117 0.883
41 H 0.083 0.917
42 H 0.077 0.923
43 H 0.055 0.945
44 H 0.056 0.944
45 H 0.068 0.932
46 H 0.059 0.941
47 H 0.056 0.944
48 H 0.056 0.944
49 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.212 -3.316 -3.145 20.722
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.016 4.016
3 O -0.276 6.276
4 C 0.306 3.694
5 O -0.368 6.368
6 C -0.012 4.012
7 H 0.129 0.871
8 N -0.298 5.298
9 C 0.001 3.999
10 C -0.217 4.217
11 C -0.084 4.084
12 C -0.248 4.248
13 C 0.111 3.889
14 C -0.491 4.491
15 H 0.096 0.904
16 C -0.142 4.142
17 N -0.418 5.418
18 Si 0.731 3.269
19 H -0.184 1.184
20 H -0.197 1.197
21 H -0.200 1.200
22 C -0.186 4.186
23 C -0.112 4.112
24 C -0.138 4.138
25 H 0.104 0.896
26 C -0.212 4.212
27 C -0.163 4.163
28 C -0.206 4.206
29 H 0.084 0.916
30 H 0.095 0.905
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.086 0.914
34 H 0.172 0.828
35 H 0.043 0.957
36 H 0.082 0.918
37 H 0.105 0.895
38 H 0.109 0.891
39 H 0.090 0.910
40 H 0.135 0.865
41 H 0.101 0.899
42 H 0.095 0.905
43 H 0.074 0.926
44 H 0.075 0.925
45 H 0.086 0.914
46 H 0.078 0.922
47 H 0.075 0.925
48 H 0.075 0.925
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -19.891 -3.790 -2.680 20.426
hybrid contribution 0.773 0.354 -0.886 1.228
sum -19.118 -3.436 -3.566 19.749
Atomic orbital electron populations
1.21789 0.92878 1.02751 1.03348 1.22962 0.95088 0.81105 1.02475
1.86572 1.25076 1.31447 1.84546 1.23794 0.80136 0.92841 0.72671
1.90676 1.60167 1.42616 1.43386 1.21267 0.90971 0.88956 1.00013
0.87132 1.60357 1.00820 1.39564 1.29091 1.20621 0.93046 0.88180
0.98066 1.18800 0.91797 1.13019 0.98125 1.20334 0.94055 0.97676
0.96353 1.20977 0.93423 1.11503 0.98880 1.17639 0.93179 0.88400
0.89723 1.19640 0.91541 1.15084 1.22812 0.90422 1.25914 1.00852
0.93587 0.93832 1.69836 1.38420 1.07366 1.26223 0.86294 0.81775
0.79805 0.79048 1.18379 1.19720 1.20023 1.21268 0.92310 1.05537
0.99509 1.20503 0.94665 0.99984 0.96053 1.21837 0.98025 0.99788
0.94154 0.89576 1.22035 0.94354 1.03272 1.01553 1.21636 1.01805
0.98541 0.94321 1.21770 1.01485 1.00248 0.97131 0.91620 0.90513
0.91547 0.91522 0.91420 0.82829 0.95689 0.91787 0.89454 0.89089
0.90984 0.86538 0.89909 0.90454 0.92615 0.92471 0.91362 0.92231
0.92491 0.92513 0.92733
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.98 10.29 37.16 0.38 -0.59 16
2 C 0.06 0.55 6.19 37.16 0.23 0.78 16
3 O -0.36 -4.12 7.36 -39.26 -0.29 -4.41 16
4 C 0.46 6.54 5.90 36.01 0.21 6.76 16
5 O -0.48 -8.57 16.18 -18.75 -0.30 -8.87 16
6 C 0.10 1.30 2.36 -68.86 -0.16 1.14 16
7 H 0.11 1.31 7.80 -51.93 -0.41 0.91 16
8 N -0.66 -10.77 5.73 -109.22 -0.63 -11.40 16
9 C 0.13 2.17 5.60 -4.97 -0.03 2.14 16
10 C -0.22 -4.63 5.42 -104.33 -0.56 -5.20 16
11 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16
12 C -0.23 -5.73 9.80 -38.87 -0.38 -6.11 16
13 C 0.11 3.05 5.58 -106.82 -0.60 2.46 16
14 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16
15 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16
16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16
17 N -0.79 -20.53 10.95 55.55 0.61 -19.92 16
18 Si 0.91 18.81 29.60 -169.99 -5.03 13.78 16
19 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16
20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16
21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16
22 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16
23 C -0.09 -2.13 9.67 -39.66 -0.38 -2.51 16
24 C -0.12 -1.27 2.25 -90.62 -0.20 -1.47 16
25 H 0.09 0.94 7.35 -51.93 -0.38 0.56 16
26 C -0.15 -1.39 8.59 37.15 0.32 -1.08 16
27 C -0.13 -1.40 4.87 -26.73 -0.13 -1.53 16
28 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16
29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
32 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16
33 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16
34 H 0.35 5.84 6.48 -39.29 -0.25 5.59 16
35 H 0.02 0.39 7.30 -51.93 -0.38 0.01 16
36 H 0.06 1.04 7.99 -51.93 -0.42 0.62 16
37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16
38 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16
39 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16
40 H 0.12 3.12 6.16 -52.49 -0.32 2.80 16
41 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16
42 H 0.08 0.73 5.46 -51.93 -0.28 0.45 16
43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
44 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16
45 H 0.07 0.86 6.26 -51.93 -0.33 0.54 16
46 H 0.06 0.69 7.28 -51.93 -0.38 0.31 16
47 H 0.06 0.48 6.56 -51.93 -0.34 0.13 16
48 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16
49 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 390.57 15.07 5.89 5.89
Total: -1.00 -29.15 390.57 -9.88 -39.03
By element:
Atomic # 1 Polarization: 17.65 SS G_CDS: -8.03 Total: 9.63 kcal
Atomic # 6 Polarization: -21.62 SS G_CDS: -2.10 Total: -23.71 kcal
Atomic # 7 Polarization: -31.30 SS G_CDS: -0.02 Total: -31.32 kcal
Atomic # 8 Polarization: -12.69 SS G_CDS: -0.59 Total: -13.29 kcal
Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -29.15 -9.88 -39.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347785252.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.698 kcal
(2) G-P(sol) polarization free energy of solvation -29.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.850 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.39 seconds