Wall clock time and date at job start Tue Mar 31 2020 14:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 O 1.45197 * 109.46861 * 2 1
4 4 C 1.34231 * 117.00013 * 179.97438 * 3 2 1
5 5 O 1.20829 * 119.99823 * 359.97438 * 4 3 2
6 6 C 1.50702 * 120.00293 * 180.02562 * 4 3 2
7 7 H 1.08997 * 109.47081 * 59.99726 * 6 4 3
8 8 N 1.46901 * 109.47121 * 180.02562 * 6 4 3
9 9 C 1.46904 * 110.99802 * 204.99709 * 8 6 4
10 10 C 1.50704 * 109.47113 * 179.97438 * 9 8 6
11 11 C 1.38634 * 119.74839 * 269.73165 * 10 9 8
12 12 C 1.37619 * 120.24294 * 179.72398 * 11 10 9
13 13 C 1.40720 * 119.74615 * 0.56381 * 12 11 10
14 14 C 1.41392 * 120.24340 * 179.68137 * 13 12 11
15 15 H 1.07999 * 120.00216 * 24.41557 * 14 13 12
16 16 C 1.39941 * 120.00039 * 204.40587 * 14 13 12
17 17 N 1.30821 * 120.00054 * 17.87073 * 16 14 13
18 18 Si 1.86800 * 120.00114 * 197.87041 * 16 14 13
19 19 H 1.48494 * 109.47296 * 0.02562 * 18 16 14
20 20 H 1.48503 * 109.47304 * 120.00255 * 18 16 14
21 21 H 1.48501 * 109.47160 * 240.00002 * 18 16 14
22 22 C 1.40714 * 119.50918 * 359.71205 * 13 12 11
23 23 C 1.37622 * 119.74661 * 359.97438 * 22 13 12
24 24 C 1.52999 * 109.46811 * 299.99911 * 6 4 3
25 25 H 1.09001 * 109.47046 * 185.00043 * 24 6 4
26 26 C 1.52994 * 109.47299 * 65.00065 * 24 6 4
27 27 C 1.53005 * 109.47124 * 304.99939 * 24 6 4
28 28 C 1.53001 * 109.46945 * 185.00153 * 27 24 6
29 29 H 1.08999 * 109.47465 * 60.00170 * 1 2 3
30 30 H 1.08998 * 109.47194 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47540 * 299.99952 * 1 2 3
32 32 H 1.09000 * 109.47540 * 240.00048 * 2 1 3
33 33 H 1.08999 * 109.47465 * 119.99830 * 2 1 3
34 34 H 1.00898 * 111.00484 * 81.04615 * 8 6 4
35 35 H 1.08994 * 109.47076 * 300.00212 * 9 8 6
36 36 H 1.09004 * 109.46857 * 60.00366 * 9 8 6
37 37 H 1.07996 * 119.87653 * 359.97175 * 11 10 9
38 38 H 1.08003 * 120.12565 * 180.27913 * 12 11 10
39 39 H 0.97003 * 120.00559 * 180.02562 * 17 16 14
40 40 H 1.07999 * 120.12544 * 179.97438 * 22 13 12
41 41 H 1.07999 * 119.87177 * 180.02562 * 23 22 13
42 42 H 1.09001 * 109.47053 * 299.99973 * 26 24 6
43 43 H 1.08998 * 109.47492 * 59.99583 * 26 24 6
44 44 H 1.08999 * 109.47338 * 180.02562 * 26 24 6
45 45 H 1.09001 * 109.47154 * 305.00083 * 27 24 6
46 46 H 1.08994 * 109.47238 * 65.00262 * 27 24 6
47 47 H 1.09001 * 109.47137 * 299.99940 * 28 27 24
48 48 H 1.09008 * 109.47314 * 60.00045 * 28 27 24
49 49 H 1.09004 * 109.46992 * 179.97438 * 28 27 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3446 1.5449 0.0005
5 8 4.0807 0.5867 0.0015
6 6 3.9206 2.9375 0.0012
7 1 3.5843 3.4694 0.8911
8 7 5.3876 2.8606 0.0010
9 6 5.9784 4.0741 0.5811
10 6 7.4809 3.9586 0.5646
11 6 8.1401 3.4028 1.6502
12 6 9.5114 3.2872 1.6435
13 6 10.2454 3.7467 0.5343
14 6 11.6552 3.6392 0.5192
15 1 12.1461 2.8894 1.1217
16 6 12.4143 4.5044 -0.2768
17 7 11.8855 5.6136 -0.7256
18 14 14.1829 4.0755 -0.6984
19 1 14.5396 2.7765 -0.0736
20 1 14.3292 3.9719 -2.1725
21 1 15.0856 5.1369 -0.1847
22 6 9.5660 4.3143 -0.5595
23 6 8.1937 4.4139 -0.5338
24 6 3.4495 3.6847 -1.2481
25 1 3.9358 4.6592 -1.2936
26 6 1.9326 3.8741 -1.1873
27 6 3.8129 2.8747 -2.4942
28 6 3.4547 3.6775 -3.7466
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 5.7411 2.6957 -0.9295
35 1 5.6738 4.9418 -0.0039
36 1 5.6346 4.1899 1.6090
37 1 7.5751 3.0556 2.5025
38 1 10.0227 2.8498 2.4883
39 1 12.4116 6.2132 -1.2776
40 1 10.1195 4.6705 -1.4157
41 1 7.6701 4.8488 -1.3723
42 1 1.4463 2.8997 -1.1418
43 1 1.6737 4.4511 -0.2996
44 1 1.5969 4.4061 -2.0775
45 1 4.8822 2.6638 -2.4914
46 1 3.2575 1.9369 -2.4927
47 1 2.3853 3.8884 -3.7494
48 1 4.0101 4.6154 -3.7481
49 1 3.7140 3.1006 -4.6344
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000347785252.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:46
Heat of formation + Delta-G solvation = -101.008430 kcal
Electronic energy + Delta-G solvation = -27016.561995 eV
Core-core repulsion = 23327.950742 eV
Total energy + Delta-G solvation = -3688.611253 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.75700 -39.67118 -38.65245 -37.48884 -36.05922 -34.84962 -32.72084 -32.10977
-31.14447 -30.72399 -28.73906 -26.85980 -25.31668 -24.58085 -23.79507 -22.87180
-22.46441 -21.64390 -20.67349 -19.21262 -18.50900 -18.01924 -17.43565 -17.10041
-16.52122 -16.08102 -15.88446 -15.68077 -15.48854 -15.38071 -14.83112 -14.53980
-14.31026 -14.21570 -13.91177 -13.78676 -13.59759 -13.53302 -13.34464 -13.07422
-12.91545 -12.83320 -12.77587 -12.71010 -12.58356 -12.42331 -12.34664 -12.08251
-11.84220 -11.65563 -11.54885 -11.43150 -11.34397 -11.25910 -11.18750 -10.99910
-9.43033 -9.28597 -9.16645 -8.64000 -6.32716 0.92769 1.17676 1.27943
1.37078 1.46163 1.52249 1.67042 2.20665 2.70039 3.34601 3.65707
3.66413 3.82047 3.84457 3.99809 4.03683 4.13332 4.27608 4.31320
4.38037 4.39057 4.47994 4.59775 4.63062 4.64509 4.73363 4.75158
4.81970 4.86488 4.95992 5.05322 5.07997 5.11967 5.15499 5.16735
5.17299 5.18803 5.38786 5.41405 5.49210 5.50173 5.60617 5.72549
5.90700 6.08074 6.12085 6.21544 6.37478 6.41804 6.71909 6.88838
6.95471 7.05542 8.33243
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.020883 B = 0.002604 C = 0.002476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1340.478978 B =10748.242015 C =11305.773008
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.049 3.951
3 O -0.349 6.349
4 C 0.469 3.531
5 O -0.528 6.528
6 C 0.100 3.900
7 H 0.129 0.871
8 N -0.682 5.682
9 C 0.136 3.864
10 C -0.201 4.201
11 C -0.072 4.072
12 C -0.248 4.248
13 C 0.079 3.921
14 C -0.502 4.502
15 H 0.071 0.929
16 C 0.036 3.964
17 N -0.824 5.824
18 Si 0.981 3.019
19 H -0.261 1.261
20 H -0.263 1.263
21 H -0.264 1.264
22 C -0.191 4.191
23 C -0.094 4.094
24 C -0.110 4.110
25 H 0.091 0.909
26 C -0.150 4.150
27 C -0.125 4.125
28 C -0.145 4.145
29 H 0.071 0.929
30 H 0.095 0.905
31 H 0.070 0.930
32 H 0.061 0.939
33 H 0.060 0.940
34 H 0.345 0.655
35 H 0.046 0.954
36 H 0.078 0.922
37 H 0.110 0.890
38 H 0.091 0.909
39 H 0.288 0.712
40 H 0.100 0.900
41 H 0.108 0.892
42 H 0.072 0.928
43 H 0.066 0.934
44 H 0.070 0.930
45 H 0.047 0.953
46 H 0.050 0.950
47 H 0.071 0.929
48 H 0.056 0.944
49 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.582 -2.689 -3.544 23.016
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.024 4.024
3 O -0.266 6.266
4 C 0.312 3.688
5 O -0.416 6.416
6 C -0.011 4.011
7 H 0.146 0.854
8 N -0.315 5.315
9 C 0.009 3.991
10 C -0.203 4.203
11 C -0.091 4.091
12 C -0.267 4.267
13 C 0.077 3.923
14 C -0.532 4.532
15 H 0.089 0.911
16 C -0.179 4.179
17 N -0.450 5.450
18 Si 0.801 3.199
19 H -0.185 1.185
20 H -0.188 1.188
21 H -0.188 1.188
22 C -0.211 4.211
23 C -0.112 4.112
24 C -0.130 4.130
25 H 0.109 0.891
26 C -0.207 4.207
27 C -0.163 4.163
28 C -0.202 4.202
29 H 0.090 0.910
30 H 0.114 0.886
31 H 0.089 0.911
32 H 0.080 0.920
33 H 0.079 0.921
34 H 0.166 0.834
35 H 0.064 0.936
36 H 0.097 0.903
37 H 0.128 0.872
38 H 0.109 0.891
39 H 0.099 0.901
40 H 0.118 0.882
41 H 0.126 0.874
42 H 0.091 0.909
43 H 0.085 0.915
44 H 0.089 0.911
45 H 0.066 0.934
46 H 0.069 0.931
47 H 0.090 0.910
48 H 0.075 0.925
49 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -22.310 -3.151 -3.071 22.739
hybrid contribution 1.289 0.112 -0.732 1.487
sum -21.020 -3.039 -3.803 21.577
Atomic orbital electron populations
1.21793 0.90069 1.04191 1.03871 1.23231 0.97224 0.80019 1.01949
1.86579 1.23532 1.32660 1.83802 1.24015 0.80644 0.92743 0.71383
1.90665 1.61288 1.43998 1.45678 1.21375 0.88924 0.88829 1.01982
0.85360 1.60179 1.03084 1.39203 1.28994 1.20536 0.89708 0.89353
0.99546 1.19281 0.94567 1.09895 0.96507 1.20651 0.93382 0.97415
0.97657 1.21168 0.94708 1.12164 0.98692 1.17979 0.93886 0.89680
0.90753 1.19840 0.92187 1.16290 1.24893 0.91125 1.26729 1.05159
0.92951 0.93080 1.69874 1.40314 1.08088 1.26715 0.85188 0.76199
0.79489 0.78995 1.18491 1.18769 1.18848 1.21260 0.93715 1.07004
0.99074 1.20784 0.93701 0.99425 0.97338 1.21786 0.99423 0.99251
0.92507 0.89083 1.21999 0.92558 1.03364 1.02775 1.21614 1.00371
0.98651 0.95617 1.21747 1.02446 0.99878 0.96171 0.90964 0.88639
0.91084 0.92025 0.92142 0.83397 0.93582 0.90338 0.87244 0.89073
0.90149 0.88199 0.87392 0.90938 0.91535 0.91148 0.93393 0.93077
0.90978 0.92453 0.92696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16
2 C 0.05 0.89 6.19 71.98 0.45 1.34 16
3 O -0.35 -7.44 7.36 -51.42 -0.38 -7.82 16
4 C 0.47 12.68 5.90 71.24 0.42 13.10 16
5 O -0.53 -18.70 16.18 21.95 0.36 -18.35 16
6 C 0.10 2.39 2.36 44.17 0.10 2.49 16
7 H 0.13 2.62 7.80 -2.39 -0.02 2.60 16
8 N -0.68 -20.99 5.73 -499.45 -2.86 -23.85 16
9 C 0.14 4.26 5.60 85.56 0.48 4.74 16
10 C -0.20 -8.41 5.42 -19.67 -0.11 -8.52 16
11 C -0.07 -3.29 9.67 22.22 0.21 -3.07 16
12 C -0.25 -12.81 9.80 22.73 0.22 -12.58 16
13 C 0.08 4.45 5.58 -21.29 -0.12 4.34 16
14 C -0.50 -28.23 9.05 23.46 0.21 -28.02 16
15 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16
16 C 0.04 1.84 5.14 85.26 0.44 2.28 16
17 N -0.82 -43.82 10.95 21.83 0.24 -43.58 16
18 Si 0.98 39.33 29.60 68.60 2.03 41.36 16
19 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16
20 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
21 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16
22 C -0.19 -10.23 8.70 22.73 0.20 -10.03 16
23 C -0.09 -4.27 9.67 22.22 0.21 -4.06 16
24 C -0.11 -2.07 2.25 -10.79 -0.02 -2.10 16
25 H 0.09 1.69 7.35 -2.39 -0.02 1.67 16
26 C -0.15 -2.19 8.59 71.98 0.62 -1.57 16
27 C -0.12 -2.60 4.87 30.60 0.15 -2.45 16
28 C -0.15 -2.44 9.67 71.98 0.70 -1.75 16
29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
32 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16
33 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16
34 H 0.34 11.23 6.48 -89.70 -0.58 10.65 16
35 H 0.05 1.28 7.30 -2.39 -0.02 1.26 16
36 H 0.08 2.28 7.99 -2.38 -0.02 2.26 16
37 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16
38 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16
39 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16
40 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16
41 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16
42 H 0.07 1.15 5.46 -2.39 -0.01 1.14 16
43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
44 H 0.07 0.87 6.56 -2.39 -0.02 0.86 16
45 H 0.05 1.19 6.26 -2.39 -0.01 1.18 16
46 H 0.05 1.14 7.28 -2.39 -0.02 1.12 16
47 H 0.07 0.99 6.56 -2.39 -0.02 0.98 16
48 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16
49 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16
Total: -1.00 -65.62 390.57 4.64 -60.98
By element:
Atomic # 1 Polarization: 37.55 SS G_CDS: 0.35 Total: 37.91 kcal
Atomic # 6 Polarization: -51.54 SS G_CDS: 4.90 Total: -46.64 kcal
Atomic # 7 Polarization: -64.81 SS G_CDS: -2.62 Total: -67.43 kcal
Atomic # 8 Polarization: -26.14 SS G_CDS: -0.02 Total: -26.17 kcal
Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal
Total: -65.62 4.64 -60.98 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000347785252.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.032 kcal
(2) G-P(sol) polarization free energy of solvation -65.620 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds