Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35987 * 117.00278 * 2 1 4 4 C 1.38570 * 120.07387 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99902 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14988 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93128 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46632 * 90.00202 * 7 6 5 9 9 C 1.36939 * 119.99940 * 90.00670 * 8 7 6 10 10 H 1.07995 * 119.99634 * 304.46546 * 9 8 7 11 11 C 1.38812 * 119.99943 * 124.46977 * 9 8 7 12 12 N 1.31621 * 119.99972 * 164.67566 * 11 9 8 13 13 Si 1.86802 * 120.00137 * 344.67171 * 11 9 8 14 14 H 1.48493 * 109.47362 * 91.90144 * 13 11 9 15 15 H 1.48504 * 109.46806 * 211.90773 * 13 11 9 16 16 H 1.48506 * 109.47003 * 331.90051 * 13 11 9 17 17 C 1.46502 * 119.99996 * 269.99952 * 8 7 6 18 18 C 1.53005 * 117.49790 * 183.07178 * 17 8 7 19 19 C 1.52998 * 117.49454 * 114.41361 * 17 8 7 20 20 C 1.38246 * 120.14492 * 359.76995 * 6 5 4 21 21 C 1.38558 * 120.00087 * 0.50214 * 20 6 5 22 22 O 1.35994 * 120.07762 * 179.74516 * 21 20 6 23 23 C 1.42905 * 116.99784 * 359.73024 * 22 21 20 24 24 C 1.52999 * 109.47035 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47059 * 174.99687 * 24 23 22 26 26 C 1.53001 * 109.47333 * 295.00122 * 24 23 22 27 27 H 1.09005 * 109.46679 * 60.00353 * 1 2 3 28 28 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47393 * 300.00706 * 1 2 3 30 30 H 1.07999 * 119.99699 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92432 * 180.02562 * 5 4 3 32 32 H 1.08991 * 109.47792 * 210.00208 * 7 6 5 33 33 H 1.09000 * 109.47132 * 330.00881 * 7 6 5 34 34 H 0.96996 * 120.00168 * 180.02562 * 12 11 9 35 35 H 1.09002 * 115.55341 * 328.74649 * 17 8 7 36 36 H 1.09000 * 117.49998 * 0.02562 * 18 17 8 37 37 H 1.08995 * 117.49922 * 145.02501 * 18 17 8 38 38 H 1.09001 * 117.49832 * 214.97812 * 19 17 8 39 39 H 1.09003 * 117.50310 * 359.97438 * 19 17 8 40 40 H 1.07999 * 119.99955 * 180.27482 * 20 6 5 41 41 H 1.08995 * 109.47011 * 59.99887 * 23 22 21 42 42 H 1.08997 * 109.46425 * 299.99778 * 23 22 21 43 43 H 1.09001 * 109.47075 * 55.00181 * 24 23 22 44 44 H 1.09001 * 109.46774 * 60.00310 * 25 24 23 45 45 H 1.08998 * 109.47105 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47308 * 300.00112 * 25 24 23 47 47 H 1.09004 * 109.46595 * 299.99960 * 26 24 23 48 48 H 1.08997 * 109.47279 * 59.99842 * 26 24 23 49 49 H 1.08998 * 109.47104 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6797 0.0016 7 6 3.9838 5.0242 0.0028 8 7 4.2040 5.4587 1.3844 9 6 5.3649 5.1262 2.0301 10 1 5.6614 4.0907 2.1087 11 6 6.1605 6.1200 2.5834 12 7 7.0990 5.8048 3.4508 13 14 5.8993 7.9045 2.0971 14 1 4.9481 8.5413 3.0430 15 1 7.1975 8.6245 2.1406 16 1 5.3449 7.9664 0.7208 17 6 3.1822 6.2493 2.0753 18 6 3.5013 6.7336 3.4911 19 6 2.4862 5.6080 3.2775 20 6 4.0603 2.5232 0.0064 21 6 3.4360 1.2862 0.0002 22 8 4.1795 0.1475 -0.0003 23 6 5.6003 0.3005 -0.0003 24 6 6.2618 -1.0791 -0.0002 25 6 7.7780 -0.9178 -0.1260 26 6 5.9325 -1.8027 1.3071 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2146 2.3196 0.0014 31 1 1.3343 4.5114 0.0019 32 1 4.9421 4.9467 -0.5107 33 1 3.3541 5.7508 -0.5106 34 1 7.6547 6.4993 3.8378 35 1 2.5872 6.9062 1.4407 36 1 4.4716 6.4645 3.9084 37 1 3.1160 7.7090 3.7881 38 1 1.4334 5.8434 3.4341 39 1 2.7882 4.5978 3.5541 40 1 5.1386 2.5838 0.0113 41 1 5.9065 0.8498 0.8899 42 1 5.9065 0.8506 -0.8900 43 1 5.8874 -1.6616 -0.8421 44 1 8.1524 -0.3354 0.7159 45 1 8.2492 -1.9007 -0.1264 46 1 8.0126 -0.4024 -1.0573 47 1 6.3069 -1.2202 2.1489 48 1 4.8523 -1.9176 1.3966 49 1 6.4033 -2.7857 1.3068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352740384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -7.128868 kcal Electronic energy + Delta-G solvation = -27867.331199 eV Core-core repulsion = 24182.790869 eV Total energy + Delta-G solvation = -3684.540330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.22839 -38.40098 -37.65603 -36.53343 -35.09669 -33.04383 -31.90368 -29.82827 -29.63286 -27.38111 -27.10909 -26.48380 -25.19004 -23.38325 -21.96133 -21.53299 -20.98056 -20.06094 -19.66559 -18.10631 -16.97760 -16.67263 -16.25534 -15.94532 -15.37019 -15.19992 -14.66722 -14.57358 -14.19556 -14.16403 -13.85376 -13.68300 -13.35904 -13.05461 -12.94475 -12.45996 -12.32008 -12.13829 -11.95653 -11.89422 -11.68434 -11.41511 -11.19769 -11.08446 -10.88875 -10.81554 -10.77755 -10.64374 -10.47186 -10.39815 -10.34688 -10.29299 -9.80914 -9.49062 -9.12788 -8.46289 -8.22388 -7.37537 -6.46542 -6.03377 -3.73211 1.73550 1.88591 3.37935 3.46097 3.46704 3.50776 3.53953 4.12721 4.51054 4.82519 4.88137 4.89546 5.01711 5.05921 5.08816 5.20867 5.23138 5.31125 5.37920 5.45733 5.49358 5.55093 5.58777 5.65505 5.72007 5.78291 5.86261 5.89063 5.90811 5.95061 5.99336 6.05633 6.09276 6.15651 6.26203 6.32067 6.37181 6.52859 6.56557 6.60815 6.61893 6.74112 7.05432 7.11191 7.22182 7.32535 7.36833 7.93596 8.07669 8.49864 8.98817 9.61619 10.11569 11.05899 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.004680 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.392787 B = 5980.910267 C = 7810.412820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.312 6.312 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.110 4.110 6 C -0.071 4.071 7 C 0.183 3.817 8 N -0.565 5.565 9 C -0.282 4.282 10 H 0.069 0.931 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.885 3.115 14 H -0.270 1.270 15 H -0.305 1.305 16 H -0.270 1.270 17 C 0.111 3.889 18 C -0.198 4.198 19 C -0.210 4.210 20 C -0.151 4.151 21 C 0.098 3.902 22 O -0.308 6.308 23 C 0.061 3.939 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.265 0.735 35 H 0.086 0.914 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.267 -9.682 -8.071 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.226 6.226 3 C 0.034 3.966 4 C -0.194 4.194 5 C -0.129 4.129 6 C -0.074 4.074 7 C 0.058 3.942 8 N -0.284 5.284 9 C -0.411 4.411 10 H 0.086 0.914 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.713 3.287 14 H -0.196 1.196 15 H -0.233 1.233 16 H -0.195 1.195 17 C 0.003 3.997 18 C -0.236 4.236 19 C -0.251 4.251 20 C -0.170 4.170 21 C 0.053 3.947 22 O -0.223 6.223 23 C -0.014 4.014 24 C -0.109 4.109 25 C -0.204 4.204 26 C -0.204 4.204 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.044 -10.001 -7.977 15.112 hybrid contribution -0.251 1.313 0.126 1.342 sum -8.295 -8.688 -7.852 14.351 Atomic orbital electron populations 1.22948 0.79493 1.03193 1.00915 1.86122 1.20246 1.26517 1.89746 1.18117 0.89032 0.84771 1.04656 1.20914 0.99142 0.91766 1.07588 1.20665 0.94209 0.96382 1.01621 1.20679 0.93280 0.97202 0.96279 1.19945 0.97957 0.89291 0.87007 1.43523 1.15538 1.60934 1.08402 1.18505 0.96511 0.92970 1.33094 0.91383 1.25847 0.94271 0.98707 0.95659 1.69866 1.22079 1.33828 1.27818 0.86796 0.76233 0.85617 0.80040 1.19588 1.23294 1.19512 1.21294 0.94170 0.97027 0.87196 1.23510 1.02203 0.96750 1.01151 1.23324 0.95343 0.98318 1.08075 1.21030 1.00577 0.90332 1.05052 1.18205 0.87931 0.86055 1.02524 1.86061 1.18277 1.28629 1.89285 1.22892 0.78703 0.98015 1.01803 1.21073 0.95281 0.94986 0.99604 1.21788 0.94096 1.02127 1.02392 1.21813 1.02324 0.99653 0.96597 0.93162 0.88851 0.93061 0.85697 0.86331 0.91585 0.93462 0.92542 0.89627 0.86279 0.90814 0.91246 0.89390 0.84803 0.91541 0.92276 0.90506 0.91973 0.92044 0.92405 0.92506 0.91858 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.81 101.05 0.99 1.31 16 2 O -0.31 -4.93 10.28 -34.20 -0.35 -5.28 16 3 C 0.08 1.34 6.70 -39.12 -0.26 1.08 16 4 C -0.18 -2.69 9.04 -39.46 -0.36 -3.04 16 5 C -0.11 -1.80 9.69 -39.58 -0.38 -2.18 16 6 C -0.07 -1.31 5.46 -104.62 -0.57 -1.88 16 7 C 0.18 3.58 5.83 -5.19 -0.03 3.55 16 8 N -0.57 -12.89 2.03 -167.02 -0.34 -13.23 16 9 C -0.28 -7.52 9.17 -15.06 -0.14 -7.66 16 10 H 0.07 2.02 8.06 -52.49 -0.42 1.59 16 11 C 0.06 1.59 3.74 -17.43 -0.07 1.52 16 12 N -0.90 -26.23 13.97 55.49 0.78 -25.45 16 13 Si 0.88 21.61 24.88 -169.99 -4.23 17.38 16 14 H -0.27 -6.33 5.80 56.52 0.33 -6.01 16 15 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 C 0.11 2.34 5.16 -67.93 -0.35 1.99 16 18 C -0.20 -4.34 6.69 -26.69 -0.18 -4.52 16 19 C -0.21 -4.25 10.36 -26.69 -0.28 -4.53 16 20 C -0.15 -2.77 8.69 -39.46 -0.34 -3.11 16 21 C 0.10 1.77 6.70 -39.12 -0.26 1.51 16 22 O -0.31 -5.30 9.46 -34.22 -0.32 -5.63 16 23 C 0.06 0.89 4.12 37.16 0.15 1.05 16 24 C -0.09 -1.10 3.16 -90.62 -0.29 -1.38 16 25 C -0.15 -1.52 9.19 37.16 0.34 -1.18 16 26 C -0.15 -1.77 9.09 37.16 0.34 -1.43 16 27 H 0.05 0.47 7.67 -51.93 -0.40 0.07 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.13 1.55 6.30 -52.49 -0.33 1.22 16 31 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.07 1.30 7.98 -51.93 -0.41 0.89 16 33 H 0.05 0.82 8.01 -51.93 -0.42 0.41 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.12 3.04 5.08 -51.93 -0.26 2.77 16 37 H 0.07 1.48 7.86 -51.93 -0.41 1.07 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.09 1.97 8.14 -51.93 -0.42 1.55 16 40 H 0.13 2.47 6.30 -52.49 -0.33 2.14 16 41 H 0.07 1.06 7.65 -51.93 -0.40 0.66 16 42 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.84 7.82 -51.93 -0.41 0.44 16 49 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -30.46 389.09 -8.73 -39.19 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.44 Total: 6.06 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -1.68 Total: -18.91 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.44 Total: -38.68 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.68 Total: -10.90 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.46 -8.73 -39.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352740384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.063 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds