Wall clock time and date at job start Tue Mar 31 2020 13:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35987 * 117.00278 * 2 1 4 4 C 1.38570 * 120.07387 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99902 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14988 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93128 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.46632 * 90.00202 * 7 6 5 9 9 C 1.36939 * 119.99940 * 90.00670 * 8 7 6 10 10 H 1.07995 * 119.99634 * 304.46546 * 9 8 7 11 11 C 1.38812 * 119.99943 * 124.46977 * 9 8 7 12 12 N 1.31621 * 119.99972 * 164.67566 * 11 9 8 13 13 Si 1.86802 * 120.00137 * 344.67171 * 11 9 8 14 14 H 1.48493 * 109.47362 * 91.90144 * 13 11 9 15 15 H 1.48504 * 109.46806 * 211.90773 * 13 11 9 16 16 H 1.48506 * 109.47003 * 331.90051 * 13 11 9 17 17 C 1.46502 * 119.99996 * 269.99952 * 8 7 6 18 18 C 1.53005 * 117.49790 * 183.07178 * 17 8 7 19 19 C 1.52998 * 117.49454 * 114.41361 * 17 8 7 20 20 C 1.38246 * 120.14492 * 359.76995 * 6 5 4 21 21 C 1.38558 * 120.00087 * 0.50214 * 20 6 5 22 22 O 1.35994 * 120.07762 * 179.74516 * 21 20 6 23 23 C 1.42905 * 116.99784 * 359.73024 * 22 21 20 24 24 C 1.52999 * 109.47035 * 179.97438 * 23 22 21 25 25 C 1.53000 * 109.47059 * 174.99687 * 24 23 22 26 26 C 1.53001 * 109.47333 * 295.00122 * 24 23 22 27 27 H 1.09005 * 109.46679 * 60.00353 * 1 2 3 28 28 H 1.09002 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47393 * 300.00706 * 1 2 3 30 30 H 1.07999 * 119.99699 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.92432 * 180.02562 * 5 4 3 32 32 H 1.08991 * 109.47792 * 210.00208 * 7 6 5 33 33 H 1.09000 * 109.47132 * 330.00881 * 7 6 5 34 34 H 0.96996 * 120.00168 * 180.02562 * 12 11 9 35 35 H 1.09002 * 115.55341 * 328.74649 * 17 8 7 36 36 H 1.09000 * 117.49998 * 0.02562 * 18 17 8 37 37 H 1.08995 * 117.49922 * 145.02501 * 18 17 8 38 38 H 1.09001 * 117.49832 * 214.97812 * 19 17 8 39 39 H 1.09003 * 117.50310 * 359.97438 * 19 17 8 40 40 H 1.07999 * 119.99955 * 180.27482 * 20 6 5 41 41 H 1.08995 * 109.47011 * 59.99887 * 23 22 21 42 42 H 1.08997 * 109.46425 * 299.99778 * 23 22 21 43 43 H 1.09001 * 109.47075 * 55.00181 * 24 23 22 44 44 H 1.09001 * 109.46774 * 60.00310 * 25 24 23 45 45 H 1.08998 * 109.47105 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.47308 * 300.00112 * 25 24 23 47 47 H 1.09004 * 109.46595 * 299.99960 * 26 24 23 48 48 H 1.08997 * 109.47279 * 59.99842 * 26 24 23 49 49 H 1.08998 * 109.47104 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6797 0.0016 7 6 3.9838 5.0242 0.0028 8 7 4.2040 5.4587 1.3844 9 6 5.3649 5.1262 2.0301 10 1 5.6614 4.0907 2.1087 11 6 6.1605 6.1200 2.5834 12 7 7.0990 5.8048 3.4508 13 14 5.8993 7.9045 2.0971 14 1 4.9481 8.5413 3.0430 15 1 7.1975 8.6245 2.1406 16 1 5.3449 7.9664 0.7208 17 6 3.1822 6.2493 2.0753 18 6 3.5013 6.7336 3.4911 19 6 2.4862 5.6080 3.2775 20 6 4.0603 2.5232 0.0064 21 6 3.4360 1.2862 0.0002 22 8 4.1795 0.1475 -0.0003 23 6 5.6003 0.3005 -0.0003 24 6 6.2618 -1.0791 -0.0002 25 6 7.7780 -0.9178 -0.1260 26 6 5.9325 -1.8027 1.3071 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.2146 2.3196 0.0014 31 1 1.3343 4.5114 0.0019 32 1 4.9421 4.9467 -0.5107 33 1 3.3541 5.7508 -0.5106 34 1 7.6547 6.4993 3.8378 35 1 2.5872 6.9062 1.4407 36 1 4.4716 6.4645 3.9084 37 1 3.1160 7.7090 3.7881 38 1 1.4334 5.8434 3.4341 39 1 2.7882 4.5978 3.5541 40 1 5.1386 2.5838 0.0113 41 1 5.9065 0.8498 0.8899 42 1 5.9065 0.8506 -0.8900 43 1 5.8874 -1.6616 -0.8421 44 1 8.1524 -0.3354 0.7159 45 1 8.2492 -1.9007 -0.1264 46 1 8.0126 -0.4024 -1.0573 47 1 6.3069 -1.2202 2.1489 48 1 4.8523 -1.9176 1.3966 49 1 6.4033 -2.7857 1.3068 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352740384.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:45 Heat of formation + Delta-G solvation = -23.007091 kcal Electronic energy + Delta-G solvation = -27868.019730 eV Core-core repulsion = 24182.790869 eV Total energy + Delta-G solvation = -3685.228861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.49975 -39.59715 -39.25273 -37.91966 -36.19615 -34.77128 -33.81320 -31.20660 -31.01760 -28.56683 -28.08002 -27.61874 -26.79390 -25.06622 -23.24608 -23.16817 -22.35992 -21.58008 -21.01888 -19.38325 -18.71045 -18.08958 -17.53592 -17.18021 -16.80225 -16.61962 -16.42086 -15.75242 -15.48439 -15.40495 -15.36331 -15.09485 -14.82707 -14.44928 -14.15761 -13.91216 -13.77089 -13.32964 -13.27950 -13.22781 -13.01808 -12.77999 -12.59648 -12.35779 -12.24656 -12.17936 -12.10062 -12.04008 -11.85332 -11.79825 -11.77419 -11.60447 -11.56482 -11.25710 -10.84434 -10.47497 -9.57482 -8.71372 -8.34899 -8.09966 -5.84545 0.41500 0.54659 1.44953 1.47432 1.60218 2.23704 2.42966 2.48616 2.76031 3.03774 3.34148 3.46948 3.73759 3.81347 3.94036 4.04453 4.06496 4.15852 4.26689 4.29422 4.36855 4.43175 4.45124 4.47220 4.50091 4.51485 4.59236 4.61946 4.70519 4.74427 4.76365 4.88360 4.93667 4.93854 4.96276 5.00774 5.06353 5.11902 5.27402 5.34557 5.35145 5.35667 5.40949 5.57638 5.79508 5.86293 6.01212 6.16897 6.31305 6.68617 7.12445 7.59874 8.10885 8.97920 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010861 B = 0.004680 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.392787 B = 5980.910267 C = 7810.412820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.075 3.925 4 C -0.167 4.167 5 C -0.104 4.104 6 C -0.090 4.090 7 C 0.183 3.817 8 N -0.576 5.576 9 C -0.269 4.269 10 H 0.017 0.983 11 C 0.013 3.987 12 N -0.947 5.947 13 Si 0.945 3.055 14 H -0.250 1.250 15 H -0.317 1.317 16 H -0.258 1.258 17 C 0.107 3.893 18 C -0.213 4.213 19 C -0.193 4.193 20 C -0.166 4.166 21 C 0.075 3.925 22 O -0.318 6.318 23 C 0.061 3.939 24 C -0.087 4.087 25 C -0.143 4.143 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.060 0.940 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.264 0.736 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.115 0.885 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.083 0.917 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.046 0.954 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -8.862 -9.484 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.030 3.970 4 C -0.185 4.185 5 C -0.123 4.123 6 C -0.092 4.092 7 C 0.059 3.941 8 N -0.295 5.295 9 C -0.399 4.399 10 H 0.035 0.965 11 C -0.186 4.186 12 N -0.589 5.589 13 Si 0.771 3.229 14 H -0.174 1.174 15 H -0.246 1.246 16 H -0.182 1.182 17 C 0.000 4.000 18 C -0.251 4.251 19 C -0.233 4.233 20 C -0.185 4.185 21 C 0.030 3.970 22 O -0.233 6.233 23 C -0.014 4.014 24 C -0.105 4.105 25 C -0.200 4.200 26 C -0.201 4.201 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.079 0.921 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.073 0.927 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.439 -9.195 -9.410 17.434 hybrid contribution 0.707 0.875 0.578 1.264 sum -10.732 -8.320 -8.832 16.200 Atomic orbital electron populations 1.23318 0.76703 1.05313 1.02184 1.86099 1.23158 1.26066 1.89507 1.18351 0.88783 0.86015 1.03867 1.21281 1.00843 0.90598 1.05816 1.20934 0.93230 0.97896 1.00244 1.20600 0.94443 0.96136 0.98064 1.20012 0.98176 0.90725 0.85226 1.43608 1.14944 1.61312 1.09666 1.18173 0.98110 0.90794 1.32777 0.96549 1.26429 0.93965 1.02762 0.95409 1.70001 1.23983 1.35063 1.29854 0.85831 0.75964 0.80562 0.80520 1.17422 1.24608 1.18155 1.21619 0.93857 0.97151 0.87377 1.23428 1.01034 0.98577 1.02106 1.23248 0.97031 0.96052 1.06984 1.20977 0.99927 0.91345 1.06294 1.18475 0.89065 0.85965 1.03527 1.86042 1.19193 1.28704 1.89363 1.22999 0.77996 0.99698 1.00682 1.21116 0.96168 0.93260 0.99951 1.21781 0.92730 1.03315 1.02201 1.21790 1.01396 1.00776 0.96151 0.91349 0.86569 0.92106 0.82025 0.83649 0.93117 0.90163 0.92757 0.85702 0.90456 0.88203 0.87170 0.92711 0.86715 0.94150 0.91956 0.89478 0.93188 0.89804 0.91783 0.93725 0.93442 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -10.07 10.28 -79.53 -0.82 -10.89 16 3 C 0.08 2.48 6.70 22.57 0.15 2.63 16 4 C -0.17 -4.64 9.04 22.35 0.20 -4.44 16 5 C -0.10 -3.12 9.69 22.27 0.22 -2.91 16 6 C -0.09 -3.25 5.46 -19.86 -0.11 -3.36 16 7 C 0.18 6.99 5.83 85.63 0.50 7.49 16 8 N -0.58 -26.00 2.03 -682.34 -1.39 -27.39 16 9 C -0.27 -14.96 9.17 84.03 0.77 -14.19 16 10 H 0.02 1.08 8.06 -2.91 -0.02 1.06 16 11 C 0.01 0.71 3.74 84.86 0.32 1.03 16 12 N -0.95 -58.28 13.97 21.65 0.30 -57.98 16 13 Si 0.95 44.63 24.88 68.60 1.71 46.34 16 14 H -0.25 -10.88 5.80 99.48 0.58 -10.31 16 15 H -0.32 -15.52 7.11 99.48 0.71 -14.81 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 17 C 0.11 4.19 5.16 44.99 0.23 4.42 16 18 C -0.21 -8.93 6.69 30.62 0.20 -8.73 16 19 C -0.19 -7.33 10.36 30.62 0.32 -7.02 16 20 C -0.17 -6.44 8.69 22.35 0.19 -6.25 16 21 C 0.07 2.79 6.70 22.57 0.15 2.94 16 22 O -0.32 -11.55 9.46 -79.61 -0.75 -12.30 16 23 C 0.06 1.95 4.12 71.98 0.30 2.24 16 24 C -0.09 -2.15 3.16 -10.79 -0.03 -2.18 16 25 C -0.14 -2.99 9.19 71.98 0.66 -2.33 16 26 C -0.14 -3.58 9.09 71.98 0.65 -2.92 16 27 H 0.07 1.01 7.67 -2.38 -0.02 0.99 16 28 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 30 H 0.16 3.23 6.30 -2.91 -0.02 3.22 16 31 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16 33 H 0.08 2.53 8.01 -2.39 -0.02 2.51 16 34 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.13 4.01 8.14 -2.39 -0.02 4.00 16 36 H 0.08 3.97 5.08 -2.39 -0.01 3.96 16 37 H 0.10 3.63 7.86 -2.39 -0.02 3.61 16 38 H 0.11 3.31 8.14 -2.39 -0.02 3.30 16 39 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.11 4.73 6.30 -2.91 -0.02 4.71 16 41 H 0.04 1.46 7.65 -2.39 -0.02 1.44 16 42 H 0.06 1.88 7.68 -2.39 -0.02 1.86 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 49 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.43 389.09 5.67 -64.76 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.78 Total: 29.56 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 5.84 Total: -32.10 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.08 Total: -85.37 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.57 Total: -23.19 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.71 Total: 46.34 kcal Total: -70.43 5.67 -64.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352740384.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.753 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds