Wall clock time and date at job start Tue Mar 31 2020 12:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00493 * 2 1 4 4 H 1.09004 * 109.46585 * 20.03751 * 3 2 1 5 5 C 1.52995 * 109.47402 * 140.03376 * 3 2 1 6 6 N 1.46503 * 109.47436 * 300.00541 * 5 3 2 7 7 C 1.34779 * 120.00269 * 179.97438 * 6 5 3 8 8 O 1.21276 * 119.99599 * 0.02562 * 7 6 5 9 9 C 1.50693 * 119.99953 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47120 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47438 * 305.73254 * 10 9 7 12 12 C 1.50697 * 109.47539 * 65.73077 * 10 9 7 13 13 H 1.08005 * 120.00235 * 35.18296 * 12 10 9 14 14 C 1.37883 * 120.00403 * 215.18907 * 12 10 9 15 15 N 1.31515 * 120.00125 * 186.38201 * 14 12 10 16 16 Si 1.86799 * 119.99656 * 6.38173 * 14 12 10 17 17 H 1.48499 * 109.46896 * 94.20802 * 16 14 12 18 18 H 1.48504 * 109.46955 * 214.20275 * 16 14 12 19 19 H 1.48498 * 109.47381 * 334.20528 * 16 14 12 20 20 C 1.50696 * 109.47461 * 185.73162 * 10 9 7 21 21 C 1.38234 * 120.00180 * 302.25847 * 20 10 9 22 22 C 1.38238 * 120.00280 * 179.78868 * 21 20 10 23 23 C 1.38234 * 119.99845 * 0.43584 * 22 21 20 24 24 C 1.38245 * 120.00031 * 359.81635 * 23 22 21 25 25 C 1.38233 * 119.99829 * 359.97438 * 24 23 22 26 26 C 1.52997 * 109.47174 * 260.03757 * 3 2 1 27 27 C 1.53001 * 109.46960 * 62.00008 * 26 3 2 28 28 C 1.53000 * 109.47046 * 181.99564 * 26 3 2 29 29 H 1.09002 * 109.47313 * 54.53705 * 1 2 3 30 30 H 1.08996 * 109.47254 * 294.53828 * 1 2 3 31 31 H 1.08997 * 109.47503 * 174.53564 * 1 2 3 32 32 H 1.09004 * 109.46945 * 60.00594 * 5 3 2 33 33 H 1.08992 * 109.47539 * 180.02562 * 5 3 2 34 34 H 0.96994 * 119.99961 * 0.02562 * 6 5 3 35 35 H 1.09003 * 109.47009 * 299.99689 * 9 7 6 36 36 H 1.08994 * 109.47622 * 60.00126 * 9 7 6 37 37 H 0.96997 * 119.99988 * 179.97438 * 15 14 12 38 38 H 1.08001 * 119.99399 * 359.97438 * 21 20 10 39 39 H 1.07993 * 120.00191 * 180.27175 * 22 21 20 40 40 H 1.07994 * 120.00084 * 179.83807 * 23 22 21 41 41 H 1.07994 * 120.00044 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.99789 * 180.02562 * 25 24 23 43 43 H 1.08994 * 109.47553 * 301.99799 * 26 3 2 44 44 H 1.08996 * 109.47124 * 295.50230 * 27 26 3 45 45 H 1.08998 * 109.47196 * 55.50434 * 27 26 3 46 46 H 1.09004 * 109.46816 * 175.50310 * 27 26 3 47 47 H 1.09001 * 109.46856 * 60.00087 * 28 26 3 48 48 H 1.08999 * 109.46942 * 179.97438 * 28 26 3 49 49 H 1.08994 * 109.47136 * 300.00490 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2761 2.0300 0.3521 5 6 3.2277 1.3216 0.9265 6 7 2.8108 0.9727 2.2869 7 6 3.7216 0.9231 3.2791 8 8 4.8863 1.1678 3.0458 9 6 3.2928 0.5636 4.6783 10 6 4.5102 0.5799 5.6049 11 1 5.2859 -0.0683 5.1971 12 6 5.0384 1.9869 5.7157 13 1 4.3545 2.8228 5.7067 14 6 6.3948 2.2073 5.8283 15 7 6.8475 3.4218 6.0509 16 14 7.5895 0.7806 5.6649 17 1 8.0629 0.6898 4.2603 18 1 8.7499 1.0011 6.5651 19 1 6.9056 -0.4832 6.0394 20 6 4.1088 0.0851 6.9705 21 6 3.1014 0.7242 7.6687 22 6 2.7302 0.2676 8.9196 23 6 3.3726 -0.8225 9.4761 24 6 4.3837 -1.4585 8.7801 25 6 4.7519 -1.0046 7.5274 26 6 2.4457 1.6698 -1.4207 27 6 1.2208 1.7024 -2.3370 28 6 3.1131 3.0466 -1.4123 29 1 -0.3634 0.5962 -0.8370 30 1 -0.3633 0.4268 0.9348 31 1 -0.3634 -1.0229 -0.0979 32 1 3.9619 0.5970 0.5744 33 1 3.6708 2.3174 0.9269 34 1 1.8793 0.7766 2.4735 35 1 2.5587 1.2881 5.0308 36 1 2.8494 -0.4321 4.6780 37 1 7.8017 3.5768 6.1305 38 1 2.6023 1.5784 7.2356 39 1 1.9402 0.7642 9.4632 40 1 3.0844 -1.1776 10.4545 41 1 4.8853 -2.3104 9.2147 42 1 5.5414 -1.5017 6.9836 43 1 3.1531 0.9254 -1.7862 44 1 0.7920 0.7028 -2.4060 45 1 0.4792 2.3885 -1.9278 46 1 1.5187 2.0394 -3.3299 47 1 3.9857 3.0233 -0.7595 48 1 3.4237 3.3059 -2.4244 49 1 2.4057 3.7909 -1.0468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356253781.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:51 Heat of formation + Delta-G solvation = -72.127791 kcal Electronic energy + Delta-G solvation = -27217.009217 eV Core-core repulsion = 23529.650322 eV Total energy + Delta-G solvation = -3687.358894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -39.57720 -38.80411 -38.10985 -35.16808 -34.27136 -33.66509 -31.64573 -30.19519 -29.71870 -28.56179 -27.22373 -26.55821 -25.54995 -23.17422 -22.34049 -21.81282 -20.61433 -20.00226 -19.06168 -17.08758 -16.92355 -16.64204 -16.09577 -15.90737 -15.29572 -14.82005 -14.63700 -14.61172 -14.09186 -14.03714 -13.71464 -13.37999 -13.13234 -13.05410 -12.74655 -12.66002 -12.48958 -12.36875 -12.26642 -12.13088 -11.83273 -11.80005 -11.56102 -11.31045 -11.02435 -10.89575 -10.77003 -10.74642 -10.54913 -10.32387 -9.82511 -9.68189 -9.47589 -9.14730 -8.87511 -8.53036 -8.34089 -8.18313 -7.76958 -5.95589 -3.91588 2.12931 2.18620 3.44728 3.49615 3.51515 3.56121 3.58059 3.68219 4.55668 4.56528 4.61371 4.65486 4.76541 4.97921 5.09011 5.16160 5.27955 5.35822 5.37356 5.46919 5.47224 5.55250 5.57881 5.61183 5.63119 5.70326 5.72805 5.76395 5.88375 5.98877 5.99126 6.05721 6.09970 6.13069 6.16962 6.26641 6.37306 6.64139 6.74646 6.86998 6.92787 7.02394 7.06907 7.17446 7.30903 7.62582 7.75626 7.85586 8.10049 8.56185 9.03406 9.07559 9.70088 11.17325 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013927 B = 0.003497 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.974737 B = 8005.148993 C = 9305.281877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.377 6.377 3 C 0.083 3.917 4 H 0.067 0.933 5 C 0.120 3.880 6 N -0.743 5.743 7 C 0.514 3.486 8 O -0.504 6.504 9 C -0.118 4.118 10 C 0.053 3.947 11 H 0.053 0.947 12 C -0.485 4.485 13 H 0.070 0.930 14 C 0.085 3.915 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.296 1.296 19 H -0.258 1.258 20 C -0.034 4.034 21 C -0.107 4.107 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.138 4.138 26 C -0.111 4.111 27 C -0.148 4.148 28 C -0.153 4.153 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.392 0.608 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 -6.239 -10.521 18.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.025 3.975 4 H 0.085 0.915 5 C -0.004 4.004 6 N -0.398 5.398 7 C 0.301 3.699 8 O -0.376 6.376 9 C -0.158 4.158 10 C 0.033 3.967 11 H 0.071 0.929 12 C -0.522 4.522 13 H 0.088 0.912 14 C -0.117 4.117 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.183 1.183 20 C -0.035 4.035 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.143 4.143 25 C -0.156 4.156 26 C -0.131 4.131 27 C -0.205 4.205 28 C -0.211 4.211 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.355 -6.093 -10.665 18.144 hybrid contribution 0.102 -0.390 0.061 0.408 sum -13.253 -6.483 -10.604 18.169 Atomic orbital electron populations 1.22936 0.81437 1.02724 1.00150 1.87971 1.19295 1.27367 1.94941 1.22483 0.95217 0.85064 0.94730 0.91468 1.21477 0.95543 1.01717 0.81675 1.45998 1.11560 1.74102 1.08150 1.20804 0.85771 0.76699 0.86614 1.90727 1.17964 1.45808 1.83108 1.21674 1.01218 1.00765 0.92142 1.18200 0.92964 0.98823 0.86693 0.92888 1.20582 0.92607 0.89218 1.49814 0.91183 1.24891 0.98205 0.95238 0.93397 1.69905 1.13966 1.20795 1.49034 0.86903 0.80631 0.84026 0.78086 1.20188 1.22276 1.18273 1.20732 0.92295 0.91355 0.99105 1.20932 0.97985 0.99192 0.94437 1.21029 1.00186 0.97160 0.96052 1.20849 0.98541 0.97985 0.99594 1.20976 0.97956 0.99960 0.95376 1.21202 1.00661 0.97732 0.96041 1.21512 0.98284 0.98479 0.94778 1.21897 0.97497 1.01744 0.99360 1.21934 1.01102 0.95676 1.02353 0.93652 0.94053 0.89804 0.91320 0.90165 0.77479 0.89901 0.91393 0.92907 0.86492 0.87256 0.87465 0.87387 0.86812 0.90054 0.92211 0.92920 0.92422 0.91504 0.92273 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.30 101.05 1.04 1.23 16 2 O -0.38 -4.16 9.81 -35.23 -0.35 -4.50 16 3 C 0.08 0.88 1.95 -26.73 -0.05 0.83 16 4 H 0.07 0.64 7.71 -51.93 -0.40 0.24 16 5 C 0.12 1.68 4.96 -4.04 -0.02 1.66 16 6 N -0.74 -11.37 5.45 -60.30 -0.33 -11.69 16 7 C 0.51 10.28 7.58 -10.99 -0.08 10.20 16 8 O -0.50 -12.57 15.01 5.56 0.08 -12.48 16 9 C -0.12 -2.23 4.86 -27.89 -0.14 -2.37 16 10 C 0.05 1.22 1.28 -92.93 -0.12 1.10 16 11 H 0.05 1.31 4.52 -51.93 -0.23 1.08 16 12 C -0.49 -13.47 7.16 -34.44 -0.25 -13.72 16 13 H 0.07 2.10 8.06 -52.48 -0.42 1.68 16 14 C 0.08 2.52 5.47 -17.82 -0.10 2.42 16 15 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 16 Si 0.88 23.09 27.34 -169.99 -4.65 18.44 16 17 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 19 H -0.26 -6.26 4.39 56.52 0.25 -6.02 16 20 C -0.03 -0.73 4.77 -104.62 -0.50 -1.23 16 21 C -0.11 -2.09 8.90 -39.58 -0.35 -2.45 16 22 C -0.13 -2.17 10.05 -39.58 -0.40 -2.56 16 23 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 16 24 C -0.12 -2.19 10.05 -39.58 -0.40 -2.58 16 25 C -0.14 -2.79 9.33 -39.58 -0.37 -3.16 16 26 C -0.11 -1.04 2.73 -90.62 -0.25 -1.29 16 27 C -0.15 -1.13 7.88 37.16 0.29 -0.84 16 28 C -0.15 -1.40 8.79 37.16 0.33 -1.08 16 29 H 0.04 0.30 5.87 -51.93 -0.30 0.00 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.19 6.39 -51.93 -0.33 0.86 16 34 H 0.39 4.87 8.35 -40.82 -0.34 4.53 16 35 H 0.08 1.46 7.48 -51.93 -0.39 1.07 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 38 H 0.12 2.21 7.52 -52.49 -0.39 1.81 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 2.29 6.42 -52.49 -0.34 1.96 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.46 6.67 -51.93 -0.35 0.11 16 45 H 0.05 0.37 8.03 -51.93 -0.42 -0.05 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.70 6.39 -51.93 -0.33 0.37 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -34.26 387.31 -8.57 -42.83 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.19 Total: 5.84 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.76 Total: -16.74 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.45 Total: -39.23 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.26 Total: -16.98 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.65 Total: 18.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.26 -8.57 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356253781.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.295 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds