Wall clock time and date at job start Tue Mar 31 2020 14:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46754 * 2 1 4 4 H 1.08996 * 109.47281 * 306.06412 * 3 2 1 5 5 N 1.46904 * 109.46690 * 66.06539 * 3 2 1 6 6 C 1.46898 * 110.99734 * 205.31142 * 5 3 2 7 7 C 1.53001 * 109.47041 * 186.00280 * 6 5 3 8 8 C 1.52998 * 109.47289 * 300.00139 * 7 6 5 9 9 C 1.53002 * 109.47176 * 60.00006 * 7 6 5 10 10 C 1.50703 * 109.47204 * 180.02562 * 7 6 5 11 11 H 1.08001 * 119.99737 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99897 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00393 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99662 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47159 * 59.99968 * 14 12 10 16 16 H 1.48498 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47160 * 299.99540 * 14 12 10 18 18 C 1.50697 * 109.46797 * 186.06178 * 3 2 1 19 19 C 1.38369 * 119.85027 * 279.72852 * 18 3 2 20 20 C 1.37949 * 120.14513 * 179.72731 * 19 18 3 21 21 C 1.39625 * 119.85134 * 0.54592 * 20 19 18 22 22 C 1.47721 * 120.15015 * 179.70539 * 21 20 19 23 23 O 1.21476 * 120.00027 * 180.02562 * 22 21 20 24 24 O 1.34714 * 120.00076 * 0.02562 * 22 21 20 25 25 C 1.45198 * 116.99961 * 180.02562 * 24 22 21 26 26 C 1.39625 * 119.69784 * 359.73039 * 21 20 19 27 27 C 1.37945 * 119.85095 * 359.97438 * 26 21 20 28 28 H 1.09009 * 109.46666 * 173.23296 * 1 2 3 29 29 H 1.08996 * 109.46994 * 293.23110 * 1 2 3 30 30 H 1.08998 * 109.47127 * 53.23705 * 1 2 3 31 31 H 1.09005 * 109.47301 * 240.00528 * 2 1 3 32 32 H 1.08994 * 109.47516 * 120.00390 * 2 1 3 33 33 H 1.00900 * 111.00307 * 329.26757 * 5 3 2 34 34 H 1.09004 * 109.47149 * 305.99822 * 6 5 3 35 35 H 1.08999 * 109.46872 * 66.00187 * 6 5 3 36 36 H 1.08998 * 109.46960 * 59.99855 * 8 7 6 37 37 H 1.08998 * 109.47259 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46974 * 300.00308 * 8 7 6 39 39 H 1.09008 * 109.46742 * 60.00176 * 9 7 6 40 40 H 1.09000 * 109.46959 * 179.97438 * 9 7 6 41 41 H 1.08998 * 109.47166 * 300.00202 * 9 7 6 42 42 H 0.96993 * 120.00346 * 180.02562 * 13 12 10 43 43 H 1.07997 * 119.92800 * 0.02562 * 19 18 3 44 44 H 1.08001 * 120.07076 * 180.27807 * 20 19 18 45 45 H 1.09006 * 109.47366 * 299.99750 * 25 24 22 46 46 H 1.09001 * 109.47244 * 59.99778 * 25 24 22 47 47 H 1.09005 * 109.47109 * 180.02562 * 25 24 22 48 48 H 1.08010 * 120.07506 * 179.97438 * 26 21 20 49 49 H 1.07998 * 119.92499 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5907 1.9868 -0.8307 5 7 1.6734 2.0914 1.2660 6 6 1.5843 3.5487 1.1041 7 6 1.3493 4.2000 2.4684 8 6 0.0438 3.6727 3.0672 9 6 2.5125 3.8608 3.4027 10 6 1.2573 5.6950 2.3023 11 1 1.3570 6.1365 1.3217 12 6 1.0470 6.4993 3.4023 13 7 0.9261 5.9618 4.5964 14 14 0.9322 8.3523 3.1962 15 1 -0.1978 8.6806 2.2903 16 1 0.7043 8.9844 4.5204 17 1 2.1984 8.8649 2.6139 18 6 3.5395 1.4452 -0.1500 19 6 4.3422 1.2022 0.9505 20 6 5.7154 1.1976 0.8189 21 6 6.2951 1.4503 -0.4259 22 6 7.7650 1.4534 -0.5729 23 8 8.2665 1.6740 -1.6571 24 8 8.5493 1.2116 0.4953 25 6 9.9847 1.2311 0.2772 26 6 5.4792 1.7005 -1.5310 27 6 4.1073 1.6960 -1.3866 28 1 -0.3633 -1.0206 -0.1211 29 1 -0.3633 0.4053 0.9443 30 1 -0.3633 0.6151 -0.8233 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8106 1.7145 1.6290 34 1 2.5144 3.9245 0.6775 35 1 0.7556 3.7904 0.4385 36 1 0.1099 2.5914 3.1873 37 1 -0.1234 4.1363 4.0394 38 1 -0.7849 3.9143 2.4017 39 1 3.4426 4.2366 2.9760 40 1 2.3453 4.3252 4.3745 41 1 2.5786 2.7795 3.5228 42 1 0.7778 6.5275 5.3702 43 1 3.8926 1.0108 1.9136 44 1 6.3406 1.0033 1.6778 45 1 10.2507 0.4726 -0.4591 46 1 10.2832 2.2134 -0.0891 47 1 10.4977 1.0215 1.2158 48 1 5.9212 1.8971 -2.4967 49 1 3.4751 1.8890 -2.2407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414173322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:54 Heat of formation + Delta-G solvation = -72.307896 kcal Electronic energy + Delta-G solvation = -27311.810775 eV Core-core repulsion = 23624.444071 eV Total energy + Delta-G solvation = -3687.366704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -40.60409 -39.28728 -37.22388 -36.45078 -35.25270 -32.13544 -31.49417 -30.90482 -30.02214 -28.01851 -26.09467 -25.54982 -25.19990 -23.80412 -22.99244 -22.53810 -21.20073 -19.97965 -18.46445 -18.03752 -17.19629 -16.43794 -15.97991 -15.87344 -15.23035 -15.15313 -14.64944 -14.44725 -14.30024 -13.72040 -13.56640 -13.36701 -13.18756 -13.03507 -12.71953 -12.71418 -12.29581 -12.26928 -12.10120 -11.93562 -11.35961 -11.11755 -11.09051 -11.01261 -10.97747 -10.94685 -10.80706 -10.62316 -10.54570 -10.46608 -10.17247 -10.04576 -9.38553 -9.10416 -8.89790 -8.70516 -8.62215 -8.27920 -7.80335 -5.90540 -4.00766 0.73178 1.48615 2.53338 2.60093 3.33141 3.37885 3.40879 3.84560 4.42239 4.55232 4.67257 4.87566 4.91769 4.95922 5.00040 5.03381 5.07566 5.18341 5.31047 5.35080 5.37793 5.50128 5.55474 5.70550 5.77089 5.87094 5.93598 6.08211 6.14981 6.16130 6.26095 6.30329 6.35891 6.39022 6.48371 6.71270 6.73205 6.90271 6.95873 7.08875 7.17170 7.37861 7.47117 7.65733 7.70080 7.76395 7.83161 7.92768 8.22279 8.35228 8.56763 9.00430 9.64257 11.09804 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003597 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.608139 B = 7782.324911 C = 9441.103989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C 0.115 3.885 4 H 0.051 0.949 5 N -0.678 5.678 6 C 0.076 3.924 7 C 0.073 3.927 8 C -0.132 4.132 9 C -0.117 4.117 10 C -0.508 4.508 11 H 0.050 0.950 12 C 0.067 3.933 13 N -0.884 5.884 14 Si 0.887 3.113 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.025 4.025 19 C -0.094 4.094 20 C -0.065 4.065 21 C -0.140 4.140 22 C 0.512 3.488 23 O -0.514 6.514 24 O -0.354 6.354 25 C 0.037 3.963 26 C -0.058 4.058 27 C -0.133 4.133 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.342 0.658 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.082 0.918 38 H 0.018 0.982 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.020 0.980 42 H 0.258 0.742 43 H 0.143 0.857 44 H 0.134 0.866 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.132 0.868 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.861 -13.824 -8.126 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C 0.005 3.995 4 H 0.069 0.931 5 N -0.312 5.312 6 C -0.052 4.052 7 C 0.072 3.928 8 C -0.189 4.189 9 C -0.174 4.174 10 C -0.547 4.547 11 H 0.068 0.932 12 C -0.134 4.134 13 N -0.523 5.523 14 Si 0.715 3.285 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.026 4.026 19 C -0.112 4.112 20 C -0.084 4.084 21 C -0.141 4.141 22 C 0.358 3.642 23 O -0.404 6.404 24 O -0.271 6.271 25 C -0.057 4.057 26 C -0.076 4.076 27 C -0.152 4.152 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.030 0.970 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.068 0.932 43 H 0.160 0.840 44 H 0.152 0.848 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.150 0.850 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.644 -13.682 -7.995 18.051 hybrid contribution -0.613 1.372 -0.755 1.682 sum 8.030 -12.311 -8.750 17.106 Atomic orbital electron populations 1.21832 0.95592 1.01685 1.02238 1.21674 0.95840 0.95508 1.02730 1.20549 0.90569 0.94891 0.93504 0.93126 1.60590 1.39737 1.06308 1.24538 1.22193 0.98471 0.84557 0.99966 1.18042 0.92464 0.93316 0.88979 1.21827 0.97842 0.95954 1.03325 1.21618 0.96751 0.96912 1.02160 1.21081 1.49076 0.91124 0.93375 0.93179 1.24858 0.95179 0.98071 0.95322 1.69814 1.49680 1.34521 0.98301 0.86750 0.78481 0.86164 0.77096 1.20501 1.21361 1.20420 1.20268 0.96030 0.93528 0.92739 1.21110 0.92051 0.98342 0.99689 1.21497 0.95575 0.95315 0.95982 1.19007 0.88381 1.10701 0.96061 1.21353 0.88397 0.72633 0.81795 1.90806 1.76095 1.45870 1.27626 1.86567 1.20003 1.82143 1.38353 1.23264 0.76543 1.02598 1.03276 1.21095 0.93044 0.95715 0.97761 1.20971 0.94199 1.02381 0.97640 0.92516 0.92145 0.92788 0.91620 0.90782 0.83680 0.92626 0.96845 0.97041 0.89903 0.96327 0.96439 0.90873 0.96112 0.93164 0.83956 0.84777 0.91973 0.91852 0.87993 0.85036 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.63 37.16 0.36 -1.22 16 2 C -0.12 -1.29 5.49 -26.73 -0.15 -1.43 16 3 C 0.12 1.52 2.23 -68.86 -0.15 1.37 16 4 H 0.05 0.69 7.70 -51.93 -0.40 0.29 16 5 N -0.68 -10.83 4.65 -107.95 -0.50 -11.34 16 6 C 0.08 1.52 4.35 -3.82 -0.02 1.50 16 7 C 0.07 1.69 0.57 -155.66 -0.09 1.61 16 8 C -0.13 -3.00 7.91 37.16 0.29 -2.71 16 9 C -0.12 -2.75 8.09 37.16 0.30 -2.45 16 10 C -0.51 -13.52 8.01 -34.44 -0.28 -13.80 16 11 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 12 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 13 N -0.88 -24.21 9.35 55.43 0.52 -23.69 16 14 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.02 -0.33 4.67 -104.53 -0.49 -0.82 16 19 C -0.09 -1.29 9.30 -39.64 -0.37 -1.66 16 20 C -0.07 -0.86 9.62 -39.17 -0.38 -1.24 16 21 C -0.14 -1.93 5.87 -104.99 -0.62 -2.54 16 22 C 0.51 7.19 7.90 34.61 0.27 7.47 16 23 O -0.51 -8.15 16.14 -19.25 -0.31 -8.46 16 24 O -0.35 -4.33 9.82 -40.53 -0.40 -4.73 16 25 C 0.04 0.32 10.56 101.05 1.07 1.39 16 26 C -0.06 -0.76 9.60 -39.17 -0.38 -1.13 16 27 C -0.13 -1.69 9.65 -39.64 -0.38 -2.07 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.66 6.71 -51.93 -0.35 0.31 16 30 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.34 5.33 4.94 -39.29 -0.19 5.14 16 34 H 0.06 1.17 7.91 -51.93 -0.41 0.76 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.01 0.22 6.72 -51.93 -0.35 -0.13 16 37 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.07 1.92 6.07 -51.93 -0.32 1.60 16 41 H 0.02 0.43 7.60 -51.93 -0.39 0.04 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.14 2.00 7.70 -52.49 -0.40 1.60 16 44 H 0.13 1.57 7.61 -52.49 -0.40 1.17 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.13 1.61 7.65 -52.48 -0.40 1.21 16 49 H 0.13 1.36 8.03 -52.49 -0.42 0.93 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -28.95 391.58 -9.02 -37.98 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.12 Total: 4.31 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.09 Total: -16.05 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.02 Total: -35.03 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.71 Total: -13.18 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.95 -9.02 -37.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414173322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.332 kcal (2) G-P(sol) polarization free energy of solvation -28.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds