Wall clock time and date at job start Tue Mar 31 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46754 * 2 1 4 4 H 1.08996 * 109.47281 * 306.06412 * 3 2 1 5 5 N 1.46904 * 109.46690 * 66.06539 * 3 2 1 6 6 C 1.46898 * 110.99734 * 205.31142 * 5 3 2 7 7 C 1.53001 * 109.47041 * 186.00280 * 6 5 3 8 8 C 1.52998 * 109.47289 * 300.00139 * 7 6 5 9 9 C 1.53002 * 109.47176 * 60.00006 * 7 6 5 10 10 C 1.50703 * 109.47204 * 180.02562 * 7 6 5 11 11 H 1.08001 * 119.99737 * 359.97438 * 10 7 6 12 12 C 1.37876 * 119.99897 * 180.02562 * 10 7 6 13 13 N 1.31509 * 120.00393 * 359.97438 * 12 10 7 14 14 Si 1.86801 * 119.99662 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47159 * 59.99968 * 14 12 10 16 16 H 1.48498 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47160 * 299.99540 * 14 12 10 18 18 C 1.50697 * 109.46797 * 186.06178 * 3 2 1 19 19 C 1.38369 * 119.85027 * 279.72852 * 18 3 2 20 20 C 1.37949 * 120.14513 * 179.72731 * 19 18 3 21 21 C 1.39625 * 119.85134 * 0.54592 * 20 19 18 22 22 C 1.47721 * 120.15015 * 179.70539 * 21 20 19 23 23 O 1.21476 * 120.00027 * 180.02562 * 22 21 20 24 24 O 1.34714 * 120.00076 * 0.02562 * 22 21 20 25 25 C 1.45198 * 116.99961 * 180.02562 * 24 22 21 26 26 C 1.39625 * 119.69784 * 359.73039 * 21 20 19 27 27 C 1.37945 * 119.85095 * 359.97438 * 26 21 20 28 28 H 1.09009 * 109.46666 * 173.23296 * 1 2 3 29 29 H 1.08996 * 109.46994 * 293.23110 * 1 2 3 30 30 H 1.08998 * 109.47127 * 53.23705 * 1 2 3 31 31 H 1.09005 * 109.47301 * 240.00528 * 2 1 3 32 32 H 1.08994 * 109.47516 * 120.00390 * 2 1 3 33 33 H 1.00900 * 111.00307 * 329.26757 * 5 3 2 34 34 H 1.09004 * 109.47149 * 305.99822 * 6 5 3 35 35 H 1.08999 * 109.46872 * 66.00187 * 6 5 3 36 36 H 1.08998 * 109.46960 * 59.99855 * 8 7 6 37 37 H 1.08998 * 109.47259 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46974 * 300.00308 * 8 7 6 39 39 H 1.09008 * 109.46742 * 60.00176 * 9 7 6 40 40 H 1.09000 * 109.46959 * 179.97438 * 9 7 6 41 41 H 1.08998 * 109.47166 * 300.00202 * 9 7 6 42 42 H 0.96993 * 120.00346 * 180.02562 * 13 12 10 43 43 H 1.07997 * 119.92800 * 0.02562 * 19 18 3 44 44 H 1.08001 * 120.07076 * 180.27807 * 20 19 18 45 45 H 1.09006 * 109.47366 * 299.99750 * 25 24 22 46 46 H 1.09001 * 109.47244 * 59.99778 * 25 24 22 47 47 H 1.09005 * 109.47109 * 180.02562 * 25 24 22 48 48 H 1.08010 * 120.07506 * 179.97438 * 26 21 20 49 49 H 1.07998 * 119.92499 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5907 1.9868 -0.8307 5 7 1.6734 2.0914 1.2660 6 6 1.5843 3.5487 1.1041 7 6 1.3493 4.2000 2.4684 8 6 0.0438 3.6727 3.0672 9 6 2.5125 3.8608 3.4027 10 6 1.2573 5.6950 2.3023 11 1 1.3570 6.1365 1.3217 12 6 1.0470 6.4993 3.4023 13 7 0.9261 5.9618 4.5964 14 14 0.9322 8.3523 3.1962 15 1 -0.1978 8.6806 2.2903 16 1 0.7043 8.9844 4.5204 17 1 2.1984 8.8649 2.6139 18 6 3.5395 1.4452 -0.1500 19 6 4.3422 1.2022 0.9505 20 6 5.7154 1.1976 0.8189 21 6 6.2951 1.4503 -0.4259 22 6 7.7650 1.4534 -0.5729 23 8 8.2665 1.6740 -1.6571 24 8 8.5493 1.2116 0.4953 25 6 9.9847 1.2311 0.2772 26 6 5.4792 1.7005 -1.5310 27 6 4.1073 1.6960 -1.3866 28 1 -0.3633 -1.0206 -0.1211 29 1 -0.3633 0.4053 0.9443 30 1 -0.3633 0.6151 -0.8233 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.8106 1.7145 1.6290 34 1 2.5144 3.9245 0.6775 35 1 0.7556 3.7904 0.4385 36 1 0.1099 2.5914 3.1873 37 1 -0.1234 4.1363 4.0394 38 1 -0.7849 3.9143 2.4017 39 1 3.4426 4.2366 2.9760 40 1 2.3453 4.3252 4.3745 41 1 2.5786 2.7795 3.5228 42 1 0.7778 6.5275 5.3702 43 1 3.8926 1.0108 1.9136 44 1 6.3406 1.0033 1.6778 45 1 10.2507 0.4726 -0.4591 46 1 10.2832 2.2134 -0.0891 47 1 10.4977 1.0215 1.2158 48 1 5.9212 1.8971 -2.4967 49 1 3.4751 1.8890 -2.2407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414173322.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:49 Heat of formation + Delta-G solvation = -85.556632 kcal Electronic energy + Delta-G solvation = -27312.385283 eV Core-core repulsion = 23624.444071 eV Total energy + Delta-G solvation = -3687.941213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 6.12 seconds Orbital eigenvalues (eV) -41.63156 -40.35633 -38.59702 -37.52487 -36.70732 -33.82421 -32.46047 -31.96707 -31.52349 -28.85736 -27.43320 -27.22818 -27.12320 -25.27657 -24.02061 -23.57009 -22.18339 -21.02860 -20.29411 -19.05040 -18.20994 -17.85428 -17.40349 -17.00677 -16.78370 -16.39110 -16.00525 -15.59954 -15.33059 -14.99669 -14.56895 -14.52336 -14.47478 -14.30100 -14.17185 -13.72062 -13.58900 -13.51087 -13.24166 -13.04217 -12.98690 -12.92149 -12.58263 -12.43273 -12.20260 -12.10023 -12.05599 -12.02309 -11.89073 -11.84454 -11.65542 -11.54506 -11.25173 -10.87249 -10.56381 -10.30756 -9.91264 -9.75817 -9.16123 -7.94338 -6.10550 -0.31843 0.46861 1.42829 1.44291 1.47359 1.50376 1.68823 2.47414 2.80962 3.27710 3.37563 3.65802 3.88022 3.96500 4.03777 4.13386 4.27140 4.28683 4.31786 4.44843 4.50659 4.55356 4.62294 4.65280 4.68239 4.80245 4.87102 4.92128 4.98452 5.07582 5.12249 5.15596 5.18272 5.24762 5.27419 5.33927 5.35065 5.41198 5.47419 5.50358 5.57911 5.68140 5.73531 5.83824 5.93592 6.24427 6.31731 6.40442 6.54076 6.62984 6.71396 6.99828 7.56776 9.03038 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010831 B = 0.003597 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.608139 B = 7782.324911 C = 9441.103989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.117 3.883 4 H 0.052 0.948 5 N -0.675 5.675 6 C 0.095 3.905 7 C 0.064 3.936 8 C -0.120 4.120 9 C -0.101 4.101 10 C -0.528 4.528 11 H 0.040 0.960 12 C 0.026 3.974 13 N -0.901 5.901 14 Si 0.938 3.062 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.279 1.279 18 C -0.033 4.033 19 C -0.104 4.104 20 C -0.065 4.065 21 C -0.153 4.153 22 C 0.513 3.487 23 O -0.539 6.539 24 O -0.358 6.358 25 C 0.029 3.971 26 C -0.062 4.062 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.346 0.654 34 H 0.040 0.960 35 H 0.009 0.991 36 H 0.037 0.963 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.004 0.996 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.257 0.743 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.899 -14.878 -8.793 19.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C 0.007 3.993 4 H 0.070 0.930 5 N -0.309 5.309 6 C -0.034 4.034 7 C 0.064 3.936 8 C -0.178 4.178 9 C -0.159 4.159 10 C -0.567 4.567 11 H 0.059 0.941 12 C -0.174 4.174 13 N -0.540 5.540 14 Si 0.765 3.235 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.205 1.205 18 C -0.034 4.034 19 C -0.122 4.122 20 C -0.083 4.083 21 C -0.155 4.155 22 C 0.360 3.640 23 O -0.431 6.431 24 O -0.275 6.275 25 C -0.064 4.064 26 C -0.080 4.080 27 C -0.151 4.151 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.683 -14.751 -8.654 19.180 hybrid contribution -0.562 1.665 -0.542 1.839 sum 8.121 -13.085 -9.195 17.937 Atomic orbital electron populations 1.21826 0.95006 1.02700 1.01681 1.21631 0.96220 0.93623 1.03505 1.20612 0.90478 0.96220 0.91940 0.93037 1.60454 1.39927 1.04071 1.26479 1.21770 0.97383 0.86774 0.97456 1.18081 0.92564 0.92127 0.90860 1.21651 0.97379 0.97334 1.01449 1.21424 0.96214 0.97726 1.00495 1.21442 1.49033 0.93245 0.92962 0.94131 1.25459 0.95211 1.01435 0.95258 1.69944 1.50041 1.35401 0.98581 0.85940 0.78305 0.82236 0.77031 1.20113 1.21059 1.20486 1.20377 0.96156 0.93736 0.93087 1.21140 0.92369 0.98989 0.99687 1.21598 0.95556 0.94900 0.96235 1.19166 0.88552 1.11208 0.96536 1.21438 0.88704 0.72084 0.81781 1.90786 1.76549 1.47230 1.28510 1.86554 1.21683 1.81582 1.37640 1.23598 0.74744 1.02754 1.05334 1.21257 0.93334 0.95439 0.97961 1.21173 0.94233 1.01643 0.98033 0.90849 0.93066 0.92867 0.90111 0.90732 0.83196 0.94111 0.97328 0.94401 0.92804 0.96539 0.97692 0.93672 0.94152 0.93390 0.84342 0.83671 0.91515 0.92063 0.84803 0.84431 0.83509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.63 71.98 0.69 -2.05 16 2 C -0.11 -2.12 5.49 30.60 0.17 -1.95 16 3 C 0.12 2.88 2.23 44.17 0.10 2.98 16 4 H 0.05 1.29 7.70 -2.39 -0.02 1.27 16 5 N -0.68 -20.55 4.65 -495.44 -2.30 -22.85 16 6 C 0.10 3.72 4.35 86.30 0.38 4.09 16 7 C 0.06 2.99 0.57 -52.93 -0.03 2.96 16 8 C -0.12 -5.41 7.91 71.98 0.57 -4.84 16 9 C -0.10 -4.75 8.09 71.98 0.58 -4.16 16 10 C -0.53 -28.27 8.01 25.60 0.21 -28.06 16 11 H 0.04 2.19 7.74 -2.91 -0.02 2.17 16 12 C 0.03 1.38 5.15 84.66 0.44 1.81 16 13 N -0.90 -49.77 9.35 21.45 0.20 -49.57 16 14 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 C -0.03 -0.83 4.67 -19.80 -0.09 -0.92 16 19 C -0.10 -2.74 9.30 22.23 0.21 -2.53 16 20 C -0.06 -1.65 9.62 22.54 0.22 -1.43 16 21 C -0.15 -4.10 5.87 -20.10 -0.12 -4.22 16 22 C 0.51 14.12 7.90 70.33 0.56 14.67 16 23 O -0.54 -16.90 16.14 19.92 0.32 -16.58 16 24 O -0.36 -8.40 9.82 -56.24 -0.55 -8.95 16 25 C 0.03 0.46 10.56 113.37 1.20 1.66 16 26 C -0.06 -1.55 9.60 22.54 0.22 -1.34 16 27 C -0.13 -3.13 9.65 22.23 0.21 -2.92 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 1.00 6.71 -2.39 -0.02 0.98 16 30 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.35 10.12 4.94 -89.69 -0.44 9.67 16 34 H 0.04 1.70 7.91 -2.38 -0.02 1.68 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.04 1.46 6.72 -2.39 -0.02 1.44 16 37 H 0.05 2.75 6.07 -2.39 -0.01 2.74 16 38 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 40 H 0.04 2.37 6.07 -2.39 -0.01 2.36 16 41 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 42 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 43 H 0.14 3.73 7.70 -2.91 -0.02 3.71 16 44 H 0.15 3.26 7.61 -2.91 -0.02 3.24 16 45 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.14 3.24 7.65 -2.91 -0.02 3.22 16 49 H 0.15 2.81 8.03 -2.91 -0.02 2.78 16 Total: -1.00 -61.70 391.58 5.67 -56.03 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.48 Total: 22.81 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 5.50 Total: -26.27 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -2.10 Total: -72.42 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.23 Total: -25.53 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.70 5.67 -56.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414173322.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.526 kcal (2) G-P(sol) polarization free energy of solvation -61.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.12 seconds