Wall clock time and date at job start Tue Mar 31 2020 12:05:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47163 * 2 1
4 4 C 1.53002 * 109.46945 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.46765 * 55.00825 * 4 3 2
6 6 C 1.53001 * 109.46952 * 175.00162 * 4 3 2
7 7 N 1.46497 * 109.47435 * 179.77864 * 6 4 3
8 8 C 1.34776 * 120.00600 * 182.88304 * 7 6 4
9 9 O 1.21284 * 119.99485 * 359.97438 * 8 7 6
10 10 C 1.50691 * 120.00290 * 180.02562 * 8 7 6
11 11 C 1.53000 * 109.47238 * 179.97438 * 10 8 7
12 12 H 1.09003 * 109.47009 * 55.00082 * 11 10 8
13 13 C 1.50701 * 109.47073 * 294.99967 * 11 10 8
14 14 H 1.08002 * 120.00411 * 328.05496 * 13 11 10
15 15 C 1.37884 * 119.99966 * 148.05898 * 13 11 10
16 16 N 1.31514 * 119.99960 * 3.39870 * 15 13 11
17 17 Si 1.86795 * 120.00035 * 183.40645 * 15 13 11
18 18 H 1.48494 * 109.47436 * 89.99226 * 17 15 13
19 19 H 1.48503 * 109.47141 * 209.99830 * 17 15 13
20 20 H 1.48511 * 109.47081 * 329.99433 * 17 15 13
21 21 C 1.50700 * 109.47290 * 175.00319 * 11 10 8
22 22 C 1.38232 * 120.00409 * 60.90158 * 21 11 10
23 23 C 1.38233 * 120.00022 * 179.81216 * 22 21 11
24 24 C 1.38234 * 120.00099 * 0.39684 * 23 22 21
25 25 C 1.38232 * 120.00002 * 359.86186 * 24 23 22
26 26 C 1.38236 * 119.99911 * 359.94760 * 25 24 23
27 27 O 1.42895 * 109.47233 * 294.99993 * 4 3 2
28 28 C 1.42909 * 113.99412 * 119.89367 * 27 4 3
29 29 H 1.09002 * 109.47507 * 299.99986 * 1 2 3
30 30 H 1.09005 * 109.47288 * 59.99921 * 1 2 3
31 31 H 1.09004 * 109.47479 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46882 * 240.00423 * 2 1 3
33 33 H 1.09003 * 109.46730 * 120.00585 * 2 1 3
34 34 H 1.09005 * 109.46579 * 60.00054 * 3 2 1
35 35 H 1.08994 * 109.47471 * 300.00469 * 3 2 1
36 36 H 1.08999 * 109.47582 * 299.78174 * 6 4 3
37 37 H 1.09006 * 109.46952 * 59.77879 * 6 4 3
38 38 H 0.97008 * 119.99624 * 2.88136 * 7 6 4
39 39 H 1.09000 * 109.47162 * 300.00169 * 10 8 7
40 40 H 1.09011 * 109.47306 * 59.99736 * 10 8 7
41 41 H 0.96995 * 120.00107 * 180.02562 * 16 15 13
42 42 H 1.08005 * 119.99944 * 0.02562 * 22 21 11
43 43 H 1.08000 * 119.99931 * 180.23040 * 23 22 21
44 44 H 1.08000 * 120.00067 * 179.83308 * 24 23 22
45 45 H 1.08002 * 120.00264 * 179.97438 * 25 24 23
46 46 H 1.07998 * 120.00094 * 180.02562 * 26 25 24
47 47 H 1.09000 * 109.47076 * 300.13015 * 28 27 4
48 48 H 1.09003 * 109.47075 * 60.13479 * 28 27 4
49 49 H 1.09001 * 109.46619 * 180.13333 * 28 27 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 1 3.9336 0.8529 -0.8410
6 6 4.0801 2.8794 -0.1250
7 7 5.5450 2.8799 -0.1191
8 6 6.2188 4.0465 -0.1611
9 8 5.6122 5.0958 -0.2043
10 6 7.7257 4.0469 -0.1556
11 6 8.2355 5.4885 -0.2094
12 1 7.7977 6.0594 0.6094
13 6 7.8414 6.1119 -1.5236
14 1 7.7700 5.5010 -2.4113
15 6 7.5722 7.4625 -1.5927
16 7 7.7238 8.2186 -0.5274
17 14 6.9918 8.2181 -3.1994
18 1 5.5089 8.1718 -3.2610
19 1 7.4466 9.6297 -3.2753
20 1 7.5587 7.4534 -4.3393
21 6 9.7369 5.4955 -0.0803
22 6 10.5147 4.8474 -1.0215
23 6 11.8921 4.8572 -0.9052
24 6 12.4914 5.5081 0.1569
25 6 11.7135 6.1517 1.1010
26 6 10.3362 6.1453 0.9825
27 8 4.0458 0.8732 1.2219
28 6 4.8530 -0.2926 1.0440
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6766 1.9562 0.8901
35 1 1.6766 1.9563 -0.8899
36 1 3.7204 3.3124 -1.0584
37 1 3.7131 3.4699 0.7145
38 1 6.0302 2.0406 -0.0849
39 1 8.0858 3.5675 0.7546
40 1 8.0924 3.4995 -1.0241
41 1 7.5340 9.1685 -0.5759
42 1 10.0463 4.3363 -1.8497
43 1 12.4999 4.3540 -1.6426
44 1 13.5674 5.5135 0.2492
45 1 12.1817 6.6599 1.9310
46 1 9.7284 6.6484 1.7199
47 1 4.2734 -1.0613 0.5330
48 1 5.7289 -0.0403 0.4462
49 1 5.1725 -0.6652 2.0173
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000452299252.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:16
Heat of formation + Delta-G solvation = -80.531739 kcal
Electronic energy + Delta-G solvation = -26834.888755 eV
Core-core repulsion = 23147.165438 eV
Total energy + Delta-G solvation = -3687.723317 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-39.38666 -38.54942 -37.92860 -34.89231 -34.26267 -33.65264 -31.45530 -30.55214
-29.96937 -28.75416 -26.65992 -26.37444 -24.98262 -22.76729 -21.82555 -21.53485
-21.31645 -20.03996 -19.14028 -17.13443 -16.65385 -16.31003 -15.93862 -15.69018
-15.26240 -14.85408 -14.60616 -14.43472 -14.25149 -14.04184 -13.82588 -13.58532
-13.11708 -12.97203 -12.84061 -12.52145 -12.37832 -12.23219 -11.92179 -11.88276
-11.61756 -11.60032 -11.47801 -11.21351 -10.99020 -10.83492 -10.78883 -10.65063
-10.53250 -10.22027 -10.02608 -9.72222 -9.39507 -9.04596 -8.79464 -8.48493
-8.28968 -8.00831 -7.56881 -5.88980 -3.88672 2.32519 2.38621 3.40912
3.46334 3.47632 3.56994 3.65150 3.71380 4.55192 4.56175 4.74997
4.77182 4.79821 4.91889 5.02018 5.17748 5.22889 5.38517 5.42778
5.44938 5.49974 5.60323 5.65468 5.69131 5.74266 5.76181 5.81132
5.86831 5.88158 5.97747 6.07345 6.14331 6.14890 6.24229 6.33007
6.45072 6.57910 6.83971 6.95449 6.97041 7.05836 7.08538 7.34628
7.48637 7.58166 7.90354 7.98884 8.09109 8.16412 8.42587 9.10654
9.16546 9.72836 11.21173
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012846 B = 0.003233 C = 0.002732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2179.086491 B = 8658.136845 C =10245.347855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.122 4.122
3 C -0.128 4.128
4 C 0.079 3.921
5 H 0.067 0.933
6 C 0.113 3.887
7 N -0.747 5.747
8 C 0.512 3.488
9 O -0.496 6.496
10 C -0.122 4.122
11 C 0.080 3.920
12 H 0.071 0.929
13 C -0.490 4.490
14 H 0.050 0.950
15 C 0.077 3.923
16 N -0.881 5.881
17 Si 0.886 3.114
18 H -0.281 1.281
19 H -0.289 1.289
20 H -0.276 1.276
21 C -0.020 4.020
22 C -0.117 4.117
23 C -0.132 4.132
24 C -0.156 4.156
25 C -0.128 4.128
26 C -0.117 4.117
27 O -0.376 6.376
28 C 0.029 3.971
29 H 0.055 0.945
30 H 0.053 0.947
31 H 0.052 0.948
32 H 0.057 0.943
33 H 0.066 0.934
34 H 0.075 0.925
35 H 0.076 0.924
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.389 0.611
39 H 0.065 0.935
40 H 0.075 0.925
41 H 0.259 0.741
42 H 0.112 0.888
43 H 0.105 0.895
44 H 0.103 0.897
45 H 0.105 0.895
46 H 0.114 0.886
47 H 0.040 0.960
48 H 0.041 0.959
49 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.184 -17.668 2.171 18.540
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.160 4.160
3 C -0.166 4.166
4 C 0.021 3.979
5 H 0.085 0.915
6 C -0.011 4.011
7 N -0.403 5.403
8 C 0.298 3.702
9 O -0.367 6.367
10 C -0.162 4.162
11 C 0.061 3.939
12 H 0.089 0.911
13 C -0.528 4.528
14 H 0.068 0.932
15 C -0.126 4.126
16 N -0.519 5.519
17 Si 0.715 3.285
18 H -0.207 1.207
19 H -0.215 1.215
20 H -0.201 1.201
21 C -0.021 4.021
22 C -0.136 4.136
23 C -0.150 4.150
24 C -0.174 4.174
25 C -0.146 4.146
26 C -0.135 4.135
27 O -0.295 6.295
28 C -0.067 4.067
29 H 0.074 0.926
30 H 0.073 0.927
31 H 0.071 0.929
32 H 0.076 0.924
33 H 0.084 0.916
34 H 0.094 0.906
35 H 0.095 0.905
36 H 0.089 0.911
37 H 0.089 0.911
38 H 0.221 0.779
39 H 0.083 0.917
40 H 0.093 0.907
41 H 0.068 0.932
42 H 0.130 0.870
43 H 0.123 0.877
44 H 0.121 0.879
45 H 0.123 0.877
46 H 0.132 0.868
47 H 0.058 0.942
48 H 0.059 0.941
49 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -5.704 -16.561 2.377 17.676
hybrid contribution 0.069 0.033 -1.242 1.244
sum -5.634 -16.528 1.135 17.499
Atomic orbital electron populations
1.21766 0.95765 1.01467 1.01946 1.21487 0.95947 0.96613 1.01940
1.21879 0.93708 0.97647 1.03398 1.22469 0.94361 0.93931 0.87187
0.91471 1.21535 0.81824 0.95307 1.02452 1.46091 1.05974 1.09115
1.79078 1.20891 0.90776 0.82803 0.75701 1.90761 1.69860 1.30692
1.45370 1.21783 0.90804 1.02501 1.01154 1.17823 0.86161 0.89303
1.00573 0.91062 1.20683 1.45654 0.93208 0.93211 0.93213 1.24812
0.94541 0.97383 0.95857 1.69904 1.48169 1.05530 1.28263 0.86695
0.79188 0.78344 0.84291 1.20698 1.21488 1.20145 1.20740 0.98722
0.91561 0.91072 1.20933 0.92807 1.00784 0.99028 1.20958 0.95095
1.00913 0.98049 1.20783 0.98408 1.01650 0.96607 1.20987 0.94357
1.00283 0.98995 1.21094 0.93862 0.99804 0.98729 1.87976 1.68752
1.43135 1.29655 1.22866 0.93912 0.87517 1.02453 0.92606 0.92741
0.92911 0.92423 0.91565 0.90619 0.90514 0.91083 0.91097 0.77858
0.91699 0.90669 0.93173 0.87008 0.87727 0.87852 0.87664 0.86761
0.94168 0.94063 0.89655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16
2 C -0.12 -0.96 5.83 -26.73 -0.16 -1.12 16
3 C -0.13 -1.18 4.92 -26.73 -0.13 -1.31 16
4 C 0.08 0.83 2.33 -26.73 -0.06 0.76 16
5 H 0.07 0.62 7.60 -51.93 -0.39 0.22 16
6 C 0.11 1.59 5.37 -4.04 -0.02 1.57 16
7 N -0.75 -11.56 5.43 -60.30 -0.33 -11.88 16
8 C 0.51 10.45 7.58 -10.99 -0.08 10.37 16
9 O -0.50 -12.67 14.98 5.55 0.08 -12.58 16
10 C -0.12 -2.40 4.92 -27.89 -0.14 -2.54 16
11 C 0.08 1.95 1.66 -92.92 -0.15 1.80 16
12 H 0.07 1.99 6.99 -51.93 -0.36 1.63 16
13 C -0.49 -13.33 6.48 -34.44 -0.22 -13.56 16
14 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16
15 C 0.08 2.20 5.46 -17.82 -0.10 2.11 16
16 N -0.88 -26.19 12.87 55.43 0.71 -25.48 16
17 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16
18 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16
19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
21 C -0.02 -0.46 4.77 -104.62 -0.50 -0.95 16
22 C -0.12 -2.39 8.86 -39.59 -0.35 -2.74 16
23 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16
24 C -0.16 -2.76 10.05 -39.59 -0.40 -3.16 16
25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16
26 C -0.12 -2.52 9.67 -39.58 -0.38 -2.90 16
27 O -0.38 -4.21 9.65 -35.23 -0.34 -4.55 16
28 C 0.03 0.24 10.62 101.05 1.07 1.31 16
29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16
31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
33 H 0.07 0.55 7.82 -51.93 -0.41 0.15 16
34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
38 H 0.39 4.87 7.44 -40.82 -0.30 4.57 16
39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16
40 H 0.07 1.35 7.62 -51.92 -0.40 0.96 16
41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
42 H 0.11 2.18 7.67 -52.48 -0.40 1.78 16
43 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16
44 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16
45 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16
46 H 0.11 2.51 7.95 -52.49 -0.42 2.09 16
47 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
48 H 0.04 0.31 7.29 -51.93 -0.38 -0.07 16
49 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
LS Contribution 402.55 15.07 6.07 6.07
Total: -1.00 -33.00 402.55 -9.40 -42.40
By element:
Atomic # 1 Polarization: 13.80 SS G_CDS: -8.53 Total: 5.27 kcal
Atomic # 6 Polarization: -14.63 SS G_CDS: -2.05 Total: -16.68 kcal
Atomic # 7 Polarization: -37.75 SS G_CDS: 0.39 Total: -37.36 kcal
Atomic # 8 Polarization: -16.88 SS G_CDS: -0.26 Total: -17.14 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -33.00 -9.40 -42.40 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000452299252.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.132 kcal
(2) G-P(sol) polarization free energy of solvation -32.997 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.129 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds