Wall clock time and date at job start Tue Mar 31 2020 12:05:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52997 * 109.47163 * 2 1
4 4 C 1.53002 * 109.46945 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.46765 * 55.00825 * 4 3 2
6 6 C 1.53001 * 109.46952 * 175.00162 * 4 3 2
7 7 N 1.46497 * 109.47435 * 179.77864 * 6 4 3
8 8 C 1.34776 * 120.00600 * 182.88304 * 7 6 4
9 9 O 1.21284 * 119.99485 * 359.97438 * 8 7 6
10 10 C 1.50691 * 120.00290 * 180.02562 * 8 7 6
11 11 C 1.53000 * 109.47238 * 179.97438 * 10 8 7
12 12 H 1.09003 * 109.47009 * 55.00082 * 11 10 8
13 13 C 1.50701 * 109.47073 * 294.99967 * 11 10 8
14 14 H 1.08002 * 120.00411 * 328.05496 * 13 11 10
15 15 C 1.37884 * 119.99966 * 148.05898 * 13 11 10
16 16 N 1.31514 * 119.99960 * 3.39870 * 15 13 11
17 17 Si 1.86795 * 120.00035 * 183.40645 * 15 13 11
18 18 H 1.48494 * 109.47436 * 89.99226 * 17 15 13
19 19 H 1.48503 * 109.47141 * 209.99830 * 17 15 13
20 20 H 1.48511 * 109.47081 * 329.99433 * 17 15 13
21 21 C 1.50700 * 109.47290 * 175.00319 * 11 10 8
22 22 C 1.38232 * 120.00409 * 60.90158 * 21 11 10
23 23 C 1.38233 * 120.00022 * 179.81216 * 22 21 11
24 24 C 1.38234 * 120.00099 * 0.39684 * 23 22 21
25 25 C 1.38232 * 120.00002 * 359.86186 * 24 23 22
26 26 C 1.38236 * 119.99911 * 359.94760 * 25 24 23
27 27 O 1.42895 * 109.47233 * 294.99993 * 4 3 2
28 28 C 1.42909 * 113.99412 * 119.89367 * 27 4 3
29 29 H 1.09002 * 109.47507 * 299.99986 * 1 2 3
30 30 H 1.09005 * 109.47288 * 59.99921 * 1 2 3
31 31 H 1.09004 * 109.47479 * 179.97438 * 1 2 3
32 32 H 1.09000 * 109.46882 * 240.00423 * 2 1 3
33 33 H 1.09003 * 109.46730 * 120.00585 * 2 1 3
34 34 H 1.09005 * 109.46579 * 60.00054 * 3 2 1
35 35 H 1.08994 * 109.47471 * 300.00469 * 3 2 1
36 36 H 1.08999 * 109.47582 * 299.78174 * 6 4 3
37 37 H 1.09006 * 109.46952 * 59.77879 * 6 4 3
38 38 H 0.97008 * 119.99624 * 2.88136 * 7 6 4
39 39 H 1.09000 * 109.47162 * 300.00169 * 10 8 7
40 40 H 1.09011 * 109.47306 * 59.99736 * 10 8 7
41 41 H 0.96995 * 120.00107 * 180.02562 * 16 15 13
42 42 H 1.08005 * 119.99944 * 0.02562 * 22 21 11
43 43 H 1.08000 * 119.99931 * 180.23040 * 23 22 21
44 44 H 1.08000 * 120.00067 * 179.83308 * 24 23 22
45 45 H 1.08002 * 120.00264 * 179.97438 * 25 24 23
46 46 H 1.07998 * 120.00094 * 180.02562 * 26 25 24
47 47 H 1.09000 * 109.47076 * 300.13015 * 28 27 4
48 48 H 1.09003 * 109.47075 * 60.13479 * 28 27 4
49 49 H 1.09001 * 109.46619 * 180.13333 * 28 27 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 0.0006
5 1 3.9336 0.8529 -0.8410
6 6 4.0801 2.8794 -0.1250
7 7 5.5450 2.8799 -0.1191
8 6 6.2188 4.0465 -0.1611
9 8 5.6122 5.0958 -0.2043
10 6 7.7257 4.0469 -0.1556
11 6 8.2355 5.4885 -0.2094
12 1 7.7977 6.0594 0.6094
13 6 7.8414 6.1119 -1.5236
14 1 7.7700 5.5010 -2.4113
15 6 7.5722 7.4625 -1.5927
16 7 7.7238 8.2186 -0.5274
17 14 6.9918 8.2181 -3.1994
18 1 5.5089 8.1718 -3.2610
19 1 7.4466 9.6297 -3.2753
20 1 7.5587 7.4534 -4.3393
21 6 9.7369 5.4955 -0.0803
22 6 10.5147 4.8474 -1.0215
23 6 11.8921 4.8572 -0.9052
24 6 12.4914 5.5081 0.1569
25 6 11.7135 6.1517 1.1010
26 6 10.3362 6.1453 0.9825
27 8 4.0458 0.8732 1.2219
28 6 4.8530 -0.2926 1.0440
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5139 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6766 1.9562 0.8901
35 1 1.6766 1.9563 -0.8899
36 1 3.7204 3.3124 -1.0584
37 1 3.7131 3.4699 0.7145
38 1 6.0302 2.0406 -0.0849
39 1 8.0858 3.5675 0.7546
40 1 8.0924 3.4995 -1.0241
41 1 7.5340 9.1685 -0.5759
42 1 10.0463 4.3363 -1.8497
43 1 12.4999 4.3540 -1.6426
44 1 13.5674 5.5135 0.2492
45 1 12.1817 6.6599 1.9310
46 1 9.7284 6.6484 1.7199
47 1 4.2734 -1.0613 0.5330
48 1 5.7289 -0.0403 0.4462
49 1 5.1725 -0.6652 2.0173
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000452299252.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:15
Heat of formation + Delta-G solvation = -100.377727 kcal
Electronic energy + Delta-G solvation = -26835.749342 eV
Core-core repulsion = 23147.165438 eV
Total energy + Delta-G solvation = -3688.583903 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.43 seconds
Orbital eigenvalues (eV)
-40.78306 -39.86728 -39.26701 -35.95489 -35.57950 -35.19020 -33.41316 -31.61487
-31.47537 -30.20018 -27.87131 -27.30826 -26.50548 -24.38240 -23.14112 -22.70631
-22.15501 -21.53590 -20.76694 -18.53549 -18.01489 -17.90813 -17.24659 -16.99304
-16.42430 -16.22420 -16.02626 -15.64853 -15.60468 -15.38671 -15.26794 -14.51643
-14.48816 -14.14560 -14.00086 -13.93237 -13.81352 -13.55070 -13.41111 -13.16103
-13.05405 -12.84323 -12.59383 -12.51489 -12.43064 -12.23058 -11.92236 -11.82438
-11.75013 -11.66810 -11.47598 -11.29484 -10.96511 -10.72125 -10.50949 -10.28765
-9.92233 -9.52843 -9.17877 -8.02613 -6.05850 0.79242 0.85665 1.35741
1.40231 1.45182 1.99232 2.37819 2.46933 2.82029 3.19969 3.37643
3.71564 3.92983 4.03318 4.20460 4.23514 4.26135 4.35904 4.37659
4.42365 4.52429 4.55896 4.59575 4.60769 4.66063 4.70982 4.75657
4.78315 4.86721 4.92385 4.94815 4.97479 5.01107 5.08091 5.24032
5.27364 5.34539 5.39465 5.46478 5.53756 5.62207 5.66325 5.79952
5.85047 5.96914 6.19565 6.28787 6.42599 6.47751 6.77071 7.02054
7.56603 7.61120 9.06983
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.012846 B = 0.003233 C = 0.002732
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2179.086491 B = 8658.136845 C =10245.347855
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.117 4.117
3 C -0.127 4.127
4 C 0.090 3.910
5 H 0.089 0.911
6 C 0.110 3.890
7 N -0.725 5.725
8 C 0.509 3.491
9 O -0.558 6.558
10 C -0.116 4.116
11 C 0.083 3.917
12 H 0.020 0.980
13 C -0.484 4.484
14 H 0.048 0.952
15 C 0.020 3.980
16 N -0.918 5.918
17 Si 0.936 3.064
18 H -0.289 1.289
19 H -0.287 1.287
20 H -0.261 1.261
21 C -0.046 4.046
22 C -0.128 4.128
23 C -0.125 4.125
24 C -0.148 4.148
25 C -0.129 4.129
26 C -0.143 4.143
27 O -0.398 6.398
28 C 0.020 3.980
29 H 0.050 0.950
30 H 0.056 0.944
31 H 0.062 0.938
32 H 0.069 0.931
33 H 0.062 0.938
34 H 0.062 0.938
35 H 0.081 0.919
36 H 0.065 0.935
37 H 0.046 0.954
38 H 0.407 0.593
39 H 0.089 0.911
40 H 0.099 0.901
41 H 0.253 0.747
42 H 0.118 0.882
43 H 0.142 0.858
44 H 0.144 0.856
45 H 0.130 0.870
46 H 0.090 0.910
47 H 0.057 0.943
48 H 0.049 0.951
49 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.348 -20.595 0.866 20.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.154 4.154
3 C -0.165 4.165
4 C 0.032 3.968
5 H 0.107 0.893
6 C -0.014 4.014
7 N -0.379 5.379
8 C 0.296 3.704
9 O -0.434 6.434
10 C -0.156 4.156
11 C 0.064 3.936
12 H 0.038 0.962
13 C -0.522 4.522
14 H 0.066 0.934
15 C -0.178 4.178
16 N -0.558 5.558
17 Si 0.763 3.237
18 H -0.216 1.216
19 H -0.213 1.213
20 H -0.185 1.185
21 C -0.046 4.046
22 C -0.146 4.146
23 C -0.143 4.143
24 C -0.166 4.166
25 C -0.147 4.147
26 C -0.161 4.161
27 O -0.317 6.317
28 C -0.076 4.076
29 H 0.069 0.931
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.088 0.912
33 H 0.081 0.919
34 H 0.081 0.919
35 H 0.100 0.900
36 H 0.083 0.917
37 H 0.065 0.935
38 H 0.243 0.757
39 H 0.107 0.893
40 H 0.117 0.883
41 H 0.062 0.938
42 H 0.136 0.864
43 H 0.160 0.840
44 H 0.161 0.839
45 H 0.148 0.852
46 H 0.109 0.891
47 H 0.076 0.924
48 H 0.068 0.932
49 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -3.856 -19.570 1.064 19.975
hybrid contribution -0.438 0.826 -0.759 1.204
sum -4.294 -18.745 0.305 19.233
Atomic orbital electron populations
1.21769 0.95286 1.02098 1.01829 1.21442 0.96334 0.95332 1.02317
1.21879 0.92782 0.98821 1.03066 1.22365 0.94990 0.91515 0.87918
0.89308 1.21663 0.80634 0.97920 1.01168 1.45830 1.06774 1.08501
1.76840 1.21085 0.91229 0.83132 0.74926 1.90742 1.70929 1.33112
1.48651 1.21672 0.90380 1.00166 1.03350 1.17598 0.87774 0.91002
0.97218 0.96151 1.20996 1.43922 0.93019 0.94229 0.93382 1.25518
0.95579 0.98336 0.98379 1.70055 1.50485 1.05268 1.29981 0.85896
0.78116 0.77861 0.81794 1.21586 1.21299 1.18538 1.20560 0.97559
0.93710 0.92785 1.21042 0.94041 1.00934 0.98577 1.21373 0.94278
1.00027 0.98650 1.21258 1.00351 0.99648 0.95296 1.21277 0.93072
1.00135 1.00196 1.21087 0.95412 1.00794 0.98848 1.87960 1.69333
1.44396 1.30023 1.23087 0.94095 0.86898 1.03471 0.93126 0.92525
0.91898 0.91240 0.91890 0.91935 0.90000 0.91656 0.93542 0.75701
0.89267 0.88327 0.93838 0.86435 0.84002 0.83856 0.85187 0.89127
0.92440 0.93240 0.88859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16
2 C -0.12 -1.62 5.83 30.59 0.18 -1.45 16
3 C -0.13 -2.24 4.92 30.59 0.15 -2.09 16
4 C 0.09 1.78 2.33 30.60 0.07 1.86 16
5 H 0.09 1.39 7.60 -2.39 -0.02 1.37 16
6 C 0.11 3.15 5.37 86.38 0.46 3.61 16
7 N -0.72 -22.15 5.43 -463.07 -2.52 -24.67 16
8 C 0.51 21.27 7.58 87.65 0.66 21.93 16
9 O -0.56 -30.07 14.98 -3.04 -0.05 -30.12 16
10 C -0.12 -4.56 4.92 29.85 0.15 -4.41 16
11 C 0.08 4.19 1.66 -12.29 -0.02 4.16 16
12 H 0.02 1.21 6.99 -2.39 -0.02 1.20 16
13 C -0.48 -27.02 6.48 25.60 0.17 -26.85 16
14 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16
15 C 0.02 1.20 5.46 84.66 0.46 1.66 16
16 N -0.92 -57.47 12.87 21.45 0.28 -57.19 16
17 Si 0.94 47.27 29.54 68.60 2.03 49.29 16
18 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16
19 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16
20 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16
21 C -0.05 -2.07 4.77 -19.87 -0.09 -2.16 16
22 C -0.13 -4.98 8.86 22.27 0.20 -4.78 16
23 C -0.13 -4.06 10.05 22.27 0.22 -3.84 16
24 C -0.15 -4.62 10.05 22.27 0.22 -4.40 16
25 C -0.13 -4.62 10.05 22.27 0.22 -4.39 16
26 C -0.14 -6.31 9.67 22.27 0.22 -6.09 16
27 O -0.40 -8.36 9.65 -148.98 -1.44 -9.79 16
28 C 0.02 0.28 10.62 113.37 1.20 1.49 16
29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16
31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16
32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.06 0.93 7.82 -2.39 -0.02 0.91 16
34 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16
35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
37 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16
38 H 0.41 9.47 7.44 -92.70 -0.69 8.78 16
39 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16
40 H 0.10 3.41 7.62 -2.38 -0.02 3.39 16
41 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16
42 H 0.12 4.34 7.67 -2.91 -0.02 4.32 16
43 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16
44 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16
45 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16
46 H 0.09 4.29 7.95 -2.91 -0.02 4.27 16
47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
48 H 0.05 0.59 7.29 -2.39 -0.02 0.57 16
49 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
Total: -1.00 -76.26 402.55 3.71 -72.55
By element:
Atomic # 1 Polarization: 26.70 SS G_CDS: 0.22 Total: 26.92 kcal
Atomic # 6 Polarization: -32.18 SS G_CDS: 5.19 Total: -27.00 kcal
Atomic # 7 Polarization: -79.62 SS G_CDS: -2.24 Total: -81.86 kcal
Atomic # 8 Polarization: -38.43 SS G_CDS: -1.48 Total: -39.91 kcal
Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal
Total: -76.26 3.71 -72.55 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000452299252.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.824 kcal
(2) G-P(sol) polarization free energy of solvation -76.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.088 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.43 seconds