Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 H 1.09007 * 109.47318 * 305.00147 * 3 2 1 5 5 C 1.53006 * 109.47103 * 64.99830 * 3 2 1 6 6 C 1.52996 * 109.47335 * 184.99791 * 3 2 1 7 7 C 1.53000 * 109.47400 * 174.99902 * 6 3 2 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 3 9 9 O 1.21288 * 119.99873 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.39917 * 120.00075 * 185.27630 * 10 8 7 12 12 C 1.38933 * 120.04163 * 213.30012 * 11 10 8 13 13 C 1.38126 * 120.03704 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.12639 * 359.68018 * 13 12 11 15 15 C 1.38762 * 120.08446 * 0.59353 * 14 13 12 16 16 O 1.35893 * 120.02114 * 179.69880 * 15 14 13 17 17 C 1.42897 * 117.00074 * 359.73109 * 16 15 14 18 18 C 1.53004 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46777 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46937 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46665 * 120.00218 * 23 21 19 26 26 H 1.48498 * 109.47284 * 240.00278 * 23 21 19 27 27 C 1.38631 * 119.95633 * 359.42885 * 15 14 13 28 28 H 1.09002 * 109.47321 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47102 * 300.00228 * 1 2 3 31 31 H 1.09001 * 109.47185 * 240.00311 * 2 1 3 32 32 H 1.08994 * 109.46710 * 119.99998 * 2 1 3 33 33 H 1.08997 * 109.46810 * 299.99848 * 5 3 2 34 34 H 1.08999 * 109.46792 * 60.00348 * 5 3 2 35 35 H 1.08994 * 109.46984 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.46589 * 55.00256 * 6 3 2 37 37 H 1.08997 * 109.47224 * 295.00547 * 6 3 2 38 38 H 1.08997 * 109.46799 * 60.00189 * 7 6 3 39 39 H 1.09003 * 109.47059 * 300.00456 * 7 6 3 40 40 H 0.96997 * 120.00199 * 5.26862 * 10 8 7 41 41 H 1.08000 * 119.98133 * 0.02562 * 12 11 10 42 42 H 1.08000 * 119.93323 * 179.97438 * 13 12 11 43 43 H 1.08003 * 119.95600 * 180.30031 * 14 13 12 44 44 H 1.09001 * 109.46881 * 299.99974 * 17 16 15 45 45 H 1.08998 * 109.47261 * 59.99940 * 17 16 15 46 46 H 1.09000 * 109.46979 * 299.99300 * 18 17 16 47 47 H 1.08998 * 109.47098 * 59.99863 * 18 17 16 48 48 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.05730 * 180.25295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8868 -0.3755 9 8 6.1769 1.8389 -0.3644 10 7 6.2310 4.0528 -0.4980 11 6 7.6118 4.0506 -0.7242 12 6 8.4046 5.0623 -0.1967 13 6 9.7676 5.0603 -0.4205 14 6 10.3471 4.0492 -1.1635 15 6 9.5594 3.0393 -1.6975 16 8 10.1298 2.0491 -2.4330 17 6 11.5448 2.1138 -2.6214 18 6 12.0016 0.9236 -3.4675 19 6 13.4940 0.9916 -3.6656 20 1 14.0600 1.8027 -3.2319 21 6 14.1368 0.0181 -4.4006 22 7 13.4476 -0.9694 -4.9292 23 14 15.9867 0.1026 -4.6469 24 1 16.5236 1.3026 -3.9563 25 1 16.6174 -1.1171 -4.0814 26 1 16.2894 0.1892 -6.0981 27 6 8.1910 3.0381 -1.4755 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.5489 2.1253 1.3968 34 1 2.0699 1.5875 2.1492 35 1 1.9989 3.1540 1.3076 36 1 3.8570 0.8801 -1.0113 37 1 4.0029 0.9836 0.7596 38 1 3.7722 3.4493 0.6345 39 1 3.6263 3.3458 -1.1365 40 1 5.7521 4.8936 -0.4296 41 1 7.9549 5.8507 0.3885 42 1 10.3822 5.8478 -0.0101 43 1 11.4138 4.0477 -1.3327 44 1 11.8014 3.0424 -3.1314 45 1 12.0423 2.0823 -1.6521 46 1 11.7452 -0.0047 -2.9570 47 1 11.5042 0.9547 -4.4368 48 1 13.8997 -1.6540 -5.4466 49 1 7.5770 2.2506 -1.8869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507187162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -85.184829 kcal Electronic energy + Delta-G solvation = -25540.043854 eV Core-core repulsion = 21852.118764 eV Total energy + Delta-G solvation = -3687.925090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.67957 -39.32330 -37.69235 -36.97727 -34.56309 -33.32760 -32.69154 -30.85108 -29.89855 -29.17939 -28.66746 -26.22647 -25.01581 -23.59278 -22.50195 -21.97449 -20.79059 -20.19853 -20.10073 -18.33028 -17.29647 -16.40932 -16.20748 -15.97779 -15.53096 -15.43783 -15.26821 -15.03782 -14.85402 -14.45419 -14.07993 -13.85437 -13.73770 -13.25254 -13.05550 -12.90463 -12.65724 -12.33714 -12.30780 -12.08793 -12.01870 -11.76245 -11.65642 -11.40097 -11.27082 -10.93547 -10.92767 -10.87138 -10.79809 -10.77086 -10.53722 -10.30675 -9.85486 -9.80141 -9.62028 -9.25409 -8.43206 -8.22277 -7.79908 -6.07575 -4.12193 1.37323 1.65709 2.50233 2.84243 3.28348 3.35197 3.38971 3.86256 3.99383 4.32252 4.36848 4.44576 4.50828 4.69368 4.84086 4.94726 5.01407 5.02975 5.15239 5.19366 5.20352 5.24738 5.28701 5.39078 5.40941 5.48355 5.58142 5.65205 5.68849 5.69347 5.72418 5.75581 5.91563 5.93813 6.06247 6.06890 6.07644 6.12727 6.30420 6.38580 6.55064 6.61881 6.77494 7.00628 7.24561 7.54672 7.68133 7.84443 7.98621 8.10407 8.26896 8.93695 9.51914 11.04063 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.002053 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.479946 B =13637.981793 C =15289.387456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.506 3.494 9 O -0.509 6.509 10 N -0.675 5.675 11 C 0.178 3.822 12 C -0.198 4.198 13 C -0.061 4.061 14 C -0.227 4.227 15 C 0.164 3.836 16 O -0.312 6.312 17 C 0.065 3.935 18 C 0.024 3.976 19 C -0.525 4.525 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.283 1.283 27 C -0.164 4.164 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.409 0.591 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.028 0.972 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.913 12.372 12.246 30.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.140 4.140 7 C -0.179 4.179 8 C 0.294 3.706 9 O -0.382 6.382 10 N -0.321 5.321 11 C 0.084 3.916 12 C -0.218 4.218 13 C -0.080 4.080 14 C -0.246 4.246 15 C 0.116 3.884 16 O -0.225 6.225 17 C -0.009 4.009 18 C -0.013 4.013 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.185 4.185 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.245 0.755 41 H 0.138 0.862 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.047 0.953 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.599 11.230 12.038 29.600 hybrid contribution 1.009 0.619 -0.074 1.186 sum -23.590 11.850 11.964 28.983 Atomic orbital electron populations 1.21824 0.95966 1.01553 1.01741 1.21571 0.95740 0.96199 1.02388 1.21196 0.95046 0.96493 0.98391 0.91122 1.21961 1.01310 1.00333 0.97311 1.21436 0.94333 0.94381 1.03889 1.21756 0.90876 1.00783 1.04454 1.21007 0.90536 0.83361 0.75741 1.90799 1.69527 1.31131 1.46765 1.43554 1.06679 1.09693 1.72165 1.17302 0.82620 0.96016 0.95676 1.20615 0.93876 1.01333 1.05997 1.20663 0.93886 0.97190 0.96268 1.21382 1.00823 0.97284 1.05110 1.18959 0.91963 0.87630 0.89808 1.86190 1.26170 1.44262 1.65875 1.23350 0.75122 1.02255 1.00181 1.19139 0.95847 0.91467 0.94853 1.21013 0.91695 1.10059 1.33589 0.92286 1.25003 0.98686 0.95180 0.95405 1.69990 1.35729 1.12607 1.34393 0.86428 0.84927 0.78068 0.77935 1.19642 1.20852 1.20856 1.20257 0.92969 1.01862 1.03406 0.92846 0.92879 0.92590 0.91768 0.91871 0.92505 0.92589 0.92665 0.90843 0.90957 0.88594 0.88595 0.75510 0.86159 0.85725 0.85047 0.93049 0.93048 0.95327 0.95374 0.92771 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.80 5.40 -26.73 -0.14 -0.95 16 3 C -0.09 -0.57 2.39 -90.62 -0.22 -0.79 16 4 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 5 C -0.15 -0.80 8.70 37.16 0.32 -0.48 16 6 C -0.10 -0.83 3.97 -26.73 -0.11 -0.94 16 7 C -0.14 -0.95 5.46 -27.88 -0.15 -1.10 16 8 C 0.51 5.73 7.57 -10.99 -0.08 5.65 16 9 O -0.51 -8.31 13.67 5.55 0.08 -8.23 16 10 N -0.68 -6.83 5.34 -9.88 -0.05 -6.89 16 11 C 0.18 2.45 6.28 -83.72 -0.53 1.92 16 12 C -0.20 -2.39 9.96 -39.37 -0.39 -2.78 16 13 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 14 C -0.23 -3.66 9.04 -39.40 -0.36 -4.02 16 15 C 0.16 3.10 6.68 -39.24 -0.26 2.84 16 16 O -0.31 -6.89 10.13 -19.40 -0.20 -7.09 16 17 C 0.06 1.45 4.68 37.16 0.17 1.62 16 18 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 19 C -0.53 -14.93 9.11 -34.44 -0.31 -15.24 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 21 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 23 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C -0.16 -2.86 8.59 -39.25 -0.34 -3.20 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.05 0.24 6.56 -51.93 -0.34 -0.10 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.10 0.45 6.56 -51.93 -0.34 0.11 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 43 H 0.13 2.06 6.29 -52.48 -0.33 1.73 16 44 H 0.05 1.07 7.67 -51.93 -0.40 0.68 16 45 H 0.05 1.09 7.65 -51.93 -0.40 0.69 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 49 H 0.14 2.62 6.41 -52.49 -0.34 2.28 16 LS Contribution 396.36 15.07 5.97 5.97 Total: -1.00 -33.92 396.36 -9.38 -43.30 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.22 Total: -0.36 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.68 Total: -17.05 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.68 Total: -33.08 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.12 Total: -15.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.92 -9.38 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507187162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.886 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds