Wall clock time and date at job start Tue Mar 31 2020 14:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47140 * 2 1 4 4 H 1.09007 * 109.47318 * 305.00147 * 3 2 1 5 5 C 1.53006 * 109.47103 * 64.99830 * 3 2 1 6 6 C 1.52996 * 109.47335 * 184.99791 * 3 2 1 7 7 C 1.53000 * 109.47400 * 174.99902 * 6 3 2 8 8 C 1.50699 * 109.47103 * 180.02562 * 7 6 3 9 9 O 1.21288 * 119.99873 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99874 * 180.02562 * 8 7 6 11 11 C 1.39917 * 120.00075 * 185.27630 * 10 8 7 12 12 C 1.38933 * 120.04163 * 213.30012 * 11 10 8 13 13 C 1.38126 * 120.03704 * 180.02562 * 12 11 10 14 14 C 1.38215 * 120.12639 * 359.68018 * 13 12 11 15 15 C 1.38762 * 120.08446 * 0.59353 * 14 13 12 16 16 O 1.35893 * 120.02114 * 179.69880 * 15 14 13 17 17 C 1.42897 * 117.00074 * 359.73109 * 16 15 14 18 18 C 1.53004 * 109.47092 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.46777 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99743 * 179.97438 * 19 18 17 22 22 N 1.31517 * 120.00189 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46937 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46665 * 120.00218 * 23 21 19 26 26 H 1.48498 * 109.47284 * 240.00278 * 23 21 19 27 27 C 1.38631 * 119.95633 * 359.42885 * 15 14 13 28 28 H 1.09002 * 109.47321 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47409 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47102 * 300.00228 * 1 2 3 31 31 H 1.09001 * 109.47185 * 240.00311 * 2 1 3 32 32 H 1.08994 * 109.46710 * 119.99998 * 2 1 3 33 33 H 1.08997 * 109.46810 * 299.99848 * 5 3 2 34 34 H 1.08999 * 109.46792 * 60.00348 * 5 3 2 35 35 H 1.08994 * 109.46984 * 179.97438 * 5 3 2 36 36 H 1.09003 * 109.46589 * 55.00256 * 6 3 2 37 37 H 1.08997 * 109.47224 * 295.00547 * 6 3 2 38 38 H 1.08997 * 109.46799 * 60.00189 * 7 6 3 39 39 H 1.09003 * 109.47059 * 300.00456 * 7 6 3 40 40 H 0.96997 * 120.00199 * 5.26862 * 10 8 7 41 41 H 1.08000 * 119.98133 * 0.02562 * 12 11 10 42 42 H 1.08000 * 119.93323 * 179.97438 * 13 12 11 43 43 H 1.08003 * 119.95600 * 180.30031 * 14 13 12 44 44 H 1.09001 * 109.46881 * 299.99974 * 17 16 15 45 45 H 1.08998 * 109.47261 * 59.99940 * 17 16 15 46 46 H 1.09000 * 109.46979 * 299.99300 * 18 17 16 47 47 H 1.08998 * 109.47098 * 59.99863 * 18 17 16 48 48 H 0.96994 * 120.00572 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.05730 * 180.25295 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0645 2.8850 -0.2511 8 6 5.5663 2.8868 -0.3755 9 8 6.1769 1.8389 -0.3644 10 7 6.2310 4.0528 -0.4980 11 6 7.6118 4.0506 -0.7242 12 6 8.4046 5.0623 -0.1967 13 6 9.7676 5.0603 -0.4205 14 6 10.3471 4.0492 -1.1635 15 6 9.5594 3.0393 -1.6975 16 8 10.1298 2.0491 -2.4330 17 6 11.5448 2.1138 -2.6214 18 6 12.0016 0.9236 -3.4675 19 6 13.4940 0.9916 -3.6656 20 1 14.0600 1.8027 -3.2319 21 6 14.1368 0.0181 -4.4006 22 7 13.4476 -0.9694 -4.9292 23 14 15.9867 0.1026 -4.6469 24 1 16.5236 1.3026 -3.9563 25 1 16.6174 -1.1171 -4.0814 26 1 16.2894 0.1892 -6.0981 27 6 8.1910 3.0381 -1.4755 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.5489 2.1253 1.3968 34 1 2.0699 1.5875 2.1492 35 1 1.9989 3.1540 1.3076 36 1 3.8570 0.8801 -1.0113 37 1 4.0029 0.9836 0.7596 38 1 3.7722 3.4493 0.6345 39 1 3.6263 3.3458 -1.1365 40 1 5.7521 4.8936 -0.4296 41 1 7.9549 5.8507 0.3885 42 1 10.3822 5.8478 -0.0101 43 1 11.4138 4.0477 -1.3327 44 1 11.8014 3.0424 -3.1314 45 1 12.0423 2.0823 -1.6521 46 1 11.7452 -0.0047 -2.9570 47 1 11.5042 0.9547 -4.4368 48 1 13.8997 -1.6540 -5.4466 49 1 7.5770 2.2506 -1.8869 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507187162.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:40 Heat of formation + Delta-G solvation = -105.549215 kcal Electronic energy + Delta-G solvation = -25540.926920 eV Core-core repulsion = 21852.118764 eV Total energy + Delta-G solvation = -3688.808156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 3.94 seconds Orbital eigenvalues (eV) -41.72675 -40.61467 -38.67432 -37.89819 -35.75119 -35.35439 -33.33566 -32.61503 -31.09956 -30.43000 -29.38136 -27.09058 -26.73545 -24.58177 -23.58083 -23.41238 -22.13993 -21.18061 -20.74306 -19.67365 -18.46110 -18.13920 -17.22179 -17.07856 -16.94626 -16.75860 -16.64374 -16.28003 -15.83085 -15.59322 -14.85650 -14.75368 -14.46827 -14.37565 -14.35958 -14.27026 -14.10611 -13.47781 -13.36386 -13.18349 -12.79407 -12.77359 -12.67071 -12.65135 -12.55942 -12.48770 -12.23214 -11.86419 -11.79842 -11.60921 -11.47806 -11.42147 -11.39031 -11.30648 -11.23652 -10.85619 -10.65242 -9.43174 -9.02183 -8.28352 -6.42870 0.22530 0.47106 1.39643 1.41484 1.55047 1.58236 1.94824 2.29668 2.52525 2.82019 3.05805 3.64914 3.77723 3.89790 3.95945 4.12347 4.16110 4.19350 4.24223 4.24734 4.30280 4.41293 4.43953 4.56209 4.56806 4.63270 4.69536 4.72053 4.75255 4.82530 4.91218 5.07486 5.11674 5.20185 5.23070 5.25029 5.26623 5.27299 5.31563 5.35832 5.39781 5.42506 5.50389 5.58107 5.59922 5.66612 5.91033 6.04739 6.42858 6.54307 6.72246 7.15872 7.27476 8.85342 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.002053 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.479946 B =13637.981793 C =15289.387456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.085 4.085 4 H 0.083 0.917 5 C -0.151 4.151 6 C -0.102 4.102 7 C -0.126 4.126 8 C 0.500 3.500 9 O -0.568 6.568 10 N -0.658 5.658 11 C 0.179 3.821 12 C -0.175 4.175 13 C -0.053 4.053 14 C -0.236 4.236 15 C 0.123 3.877 16 O -0.346 6.346 17 C 0.085 3.915 18 C 0.026 3.974 19 C -0.545 4.545 20 H 0.074 0.926 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.981 3.019 24 H -0.255 1.255 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.189 4.189 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.434 0.566 41 H 0.170 0.830 42 H 0.166 0.834 43 H 0.132 0.868 44 H 0.065 0.935 45 H 0.061 0.939 46 H -0.006 1.006 47 H -0.003 1.003 48 H 0.267 0.733 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.440 16.437 14.077 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.104 4.104 4 H 0.101 0.899 5 C -0.208 4.208 6 C -0.140 4.140 7 C -0.165 4.165 8 C 0.290 3.710 9 O -0.445 6.445 10 N -0.306 5.306 11 C 0.084 3.916 12 C -0.196 4.196 13 C -0.071 4.071 14 C -0.256 4.256 15 C 0.077 3.923 16 O -0.261 6.261 17 C 0.011 3.989 18 C -0.011 4.011 19 C -0.582 4.582 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.804 3.196 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.201 1.201 27 C -0.210 4.210 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.274 0.726 41 H 0.187 0.813 42 H 0.184 0.816 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.012 0.988 47 H 0.015 0.985 48 H 0.076 0.924 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.177 15.361 13.887 32.599 hybrid contribution 1.016 -0.615 -0.581 1.322 sum -24.161 14.747 13.306 31.277 Atomic orbital electron populations 1.21800 0.94843 1.01733 1.02375 1.21604 0.96729 0.96654 1.01389 1.21144 0.93229 0.96311 0.99692 0.89869 1.21960 1.01876 1.00901 0.96033 1.21392 0.95890 0.95068 1.01672 1.21809 0.87132 1.00322 1.07272 1.21909 0.92295 0.82636 0.74121 1.90796 1.70993 1.33365 1.49391 1.43488 1.05347 1.10731 1.71038 1.17470 0.84522 0.95174 0.94466 1.21147 0.93352 1.00957 1.04096 1.21159 0.94841 0.96651 0.94454 1.21525 1.00739 0.97543 1.05765 1.19279 0.92831 0.88477 0.91758 1.86093 1.25577 1.46635 1.67780 1.22898 0.76037 1.00298 0.99707 1.18991 0.96016 0.92253 0.93826 1.21429 0.92239 1.10713 1.33861 0.90786 1.26124 1.04668 0.94485 0.94745 1.70145 1.38329 1.13580 1.35175 0.85167 0.77583 0.78703 0.78162 1.17857 1.20288 1.20126 1.20241 0.92471 1.02906 1.05391 0.92339 0.93025 0.91729 0.93066 0.92732 0.91654 0.93442 0.91004 0.93544 0.93034 0.85156 0.85745 0.72567 0.81270 0.81633 0.84994 0.91634 0.92105 0.98788 0.98456 0.92431 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.87 16 2 C -0.13 -1.69 5.40 30.59 0.17 -1.52 16 3 C -0.09 -0.96 2.39 -10.79 -0.03 -0.98 16 4 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 5 C -0.15 -1.23 8.70 71.98 0.63 -0.61 16 6 C -0.10 -1.67 3.97 30.59 0.12 -1.55 16 7 C -0.13 -1.46 5.46 29.85 0.16 -1.30 16 8 C 0.50 11.06 7.57 87.66 0.66 11.72 16 9 O -0.57 -19.73 13.67 -3.05 -0.04 -19.77 16 10 N -0.66 -11.81 5.34 -303.55 -1.62 -13.43 16 11 C 0.18 4.65 6.28 38.14 0.24 4.89 16 12 C -0.18 -3.50 9.96 22.41 0.22 -3.28 16 13 C -0.05 -1.18 10.03 22.24 0.22 -0.96 16 14 C -0.24 -7.47 9.04 22.39 0.20 -7.27 16 15 C 0.12 4.85 6.68 22.49 0.15 5.00 16 16 O -0.35 -16.52 10.13 -92.35 -0.94 -17.46 16 17 C 0.08 3.98 4.68 71.98 0.34 4.31 16 18 C 0.03 1.53 5.34 29.85 0.16 1.68 16 19 C -0.54 -31.78 9.11 25.60 0.23 -31.55 16 20 H 0.07 4.00 7.74 -2.91 -0.02 3.97 16 21 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 22 N -0.93 -58.63 13.29 21.45 0.28 -58.35 16 23 Si 0.98 44.51 29.54 68.60 2.03 46.53 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 25 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 27 C -0.19 -6.92 8.59 22.49 0.19 -6.73 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.56 6.56 -2.39 -0.02 0.55 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.45 6.56 -2.39 -0.02 0.43 16 34 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.35 6.56 -2.39 -0.02 0.34 16 36 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 37 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.13 0.68 6.56 -2.39 -0.02 0.66 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.43 3.28 8.82 -92.71 -0.82 2.46 16 41 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.13 4.06 6.29 -2.91 -0.02 4.04 16 44 H 0.07 2.83 7.67 -2.39 -0.02 2.81 16 45 H 0.06 2.68 7.65 -2.39 -0.02 2.66 16 46 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 48 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.11 4.55 6.41 -2.91 -0.02 4.53 16 Total: -1.00 -81.50 396.36 4.66 -76.84 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.11 Total: 14.30 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 4.83 Total: -28.66 kcal Atomic # 7 Polarization: -70.44 SS G_CDS: -1.34 Total: -71.78 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.98 Total: -37.23 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -81.50 4.66 -76.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507187162.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.712 kcal (2) G-P(sol) polarization free energy of solvation -81.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds