Wall clock time and date at job start Tue Mar 31 2020 12:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00138 * 2 1 4 4 C 1.53000 * 109.46844 * 60.00236 * 3 2 1 5 5 C 1.52999 * 109.47170 * 300.00335 * 3 2 1 6 6 C 1.53002 * 109.47069 * 180.02562 * 3 2 1 7 7 N 1.46493 * 109.47219 * 65.00118 * 6 3 2 8 8 C 1.46501 * 120.00186 * 269.99732 * 7 6 3 9 9 C 1.34776 * 119.99808 * 90.00265 * 7 6 3 10 10 O 1.21277 * 120.00168 * 359.97438 * 9 7 6 11 11 C 1.50703 * 119.99818 * 180.27520 * 9 7 6 12 12 C 1.53003 * 109.47252 * 179.72061 * 11 9 7 13 13 H 1.08997 * 109.47166 * 304.99953 * 12 11 9 14 14 C 1.50704 * 109.46825 * 64.99879 * 12 11 9 15 15 H 1.07999 * 119.99786 * 234.67752 * 14 12 11 16 16 C 1.37868 * 120.00055 * 54.68055 * 14 12 11 17 17 N 1.31521 * 120.00028 * 4.87177 * 16 14 12 18 18 Si 1.86805 * 120.00249 * 184.86788 * 16 14 12 19 19 H 1.48501 * 109.46503 * 60.00163 * 18 16 14 20 20 H 1.48495 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00295 * 18 16 14 22 22 C 1.50694 * 109.47339 * 184.99957 * 12 11 9 23 23 C 1.38232 * 120.00065 * 151.48671 * 22 12 11 24 24 C 1.38239 * 119.99732 * 179.78882 * 23 22 12 25 25 C 1.38233 * 120.00363 * 0.43809 * 24 23 22 26 26 C 1.38236 * 119.99857 * 359.81682 * 25 24 23 27 27 C 1.38235 * 120.00033 * 359.97432 * 26 25 24 28 28 H 1.08998 * 109.47555 * 59.99472 * 1 2 3 29 29 H 1.09001 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46988 * 299.99900 * 1 2 3 31 31 H 1.09000 * 109.47145 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47129 * 300.00077 * 4 3 2 33 33 H 1.08997 * 109.47190 * 60.00129 * 4 3 2 34 34 H 1.09000 * 109.47149 * 299.99925 * 5 3 2 35 35 H 1.08998 * 109.47112 * 59.99733 * 5 3 2 36 36 H 1.09000 * 109.46992 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47130 * 304.99775 * 6 3 2 38 38 H 1.09000 * 109.46977 * 185.00379 * 6 3 2 39 39 H 1.09002 * 109.47076 * 270.00434 * 8 7 6 40 40 H 1.08999 * 109.46536 * 30.00312 * 8 7 6 41 41 H 1.09003 * 109.47105 * 150.00212 * 8 7 6 42 42 H 1.08997 * 109.47212 * 299.71952 * 11 9 7 43 43 H 1.08995 * 109.47320 * 59.72215 * 11 9 7 44 44 H 0.97002 * 119.99696 * 180.02562 * 17 16 14 45 45 H 1.07994 * 120.00387 * 359.97438 * 23 22 12 46 46 H 1.08006 * 119.99779 * 180.27499 * 24 23 22 47 47 H 1.07997 * 120.00387 * 179.83226 * 25 24 23 48 48 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1846 -0.0006 7 7 3.9756 0.5644 -1.2527 8 6 4.1052 -0.8921 -1.3428 9 6 4.2615 1.3338 -2.3217 10 8 4.1539 2.5395 -2.2473 11 6 4.7084 0.6954 -3.6116 12 6 4.9593 1.7825 -4.6586 13 1 4.0659 2.3977 -4.7649 14 6 6.1143 2.6455 -4.2198 15 1 5.9910 3.7159 -4.1460 16 6 7.3281 2.0685 -3.9126 17 7 7.5077 0.7783 -4.0938 18 14 8.7180 3.1194 -3.2391 19 1 8.2885 3.7510 -1.9656 20 1 9.9081 2.2665 -2.9912 21 1 9.0620 4.1758 -4.2243 22 6 5.2869 1.1397 -5.9816 23 6 4.9842 1.7934 -7.1614 24 6 5.2886 1.2056 -8.3750 25 6 5.8875 -0.0398 -8.4090 26 6 6.1854 -0.6958 -7.2292 27 6 5.8849 -0.1062 -6.0156 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0025 3.0603 1.2496 32 1 0.4722 2.1507 1.2493 33 1 1.8804 1.5237 2.1392 34 1 1.8803 1.5239 -2.1392 35 1 0.4721 2.1508 -1.2492 36 1 2.0017 3.0607 -1.2489 37 1 3.8514 0.5682 0.8410 38 1 3.9785 2.1764 0.0890 39 1 5.1148 -1.1855 -1.0550 40 1 3.3852 -1.3629 -0.6734 41 1 3.9120 -1.2114 -2.3669 42 1 5.6283 0.1363 -3.4407 43 1 3.9329 0.0183 -3.9696 44 1 8.3616 0.3724 -3.8773 45 1 4.5126 2.7646 -7.1351 46 1 5.0562 1.7184 -9.2968 47 1 6.1229 -0.5002 -9.3571 48 1 6.6529 -1.6690 -7.2556 49 1 6.1179 -0.6185 -5.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527013909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:37 Heat of formation + Delta-G solvation = -49.642916 kcal Electronic energy + Delta-G solvation = -28597.796343 eV Core-core repulsion = 24911.412466 eV Total energy + Delta-G solvation = -3686.383877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -39.74876 -38.47204 -37.79853 -34.89169 -34.09414 -32.61513 -31.01961 -29.80288 -28.67179 -27.51472 -27.28747 -26.51935 -26.03439 -24.51545 -22.43268 -21.36275 -20.08497 -19.58954 -18.28811 -16.69285 -16.26522 -15.98411 -15.74997 -15.44850 -15.26203 -14.90484 -14.81342 -14.24317 -13.82039 -13.65575 -13.16267 -13.12595 -12.88972 -12.50605 -12.40705 -12.24481 -12.19113 -11.91077 -11.84699 -11.62046 -11.57960 -11.48857 -11.39539 -11.29887 -11.07378 -10.85039 -10.76123 -10.50114 -10.35950 -10.12577 -9.90479 -9.50284 -9.25661 -9.13288 -8.67173 -8.35267 -7.95634 -7.77535 -7.40672 -5.93600 -4.03104 2.52688 2.61388 3.35055 3.37665 3.44116 3.67978 3.72281 3.88856 4.46416 4.88168 5.00648 5.02657 5.10371 5.28877 5.30454 5.37144 5.45221 5.56517 5.65361 5.67529 5.76465 5.83735 5.85725 5.92804 5.96046 6.01156 6.04346 6.11127 6.14080 6.15367 6.24751 6.42104 6.48891 6.58823 6.65369 6.74556 6.81000 7.10656 7.18139 7.21936 7.29555 7.33882 7.51539 7.58256 7.72560 7.96904 8.10293 8.21537 8.23820 8.39169 8.92884 9.25742 9.59708 11.00524 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.004499 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.725463 B = 6222.269830 C = 7296.235613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.096 3.904 4 C -0.175 4.175 5 C -0.167 4.167 6 C 0.135 3.865 7 N -0.625 5.625 8 C 0.090 3.910 9 C 0.526 3.474 10 O -0.526 6.526 11 C -0.136 4.136 12 C 0.088 3.912 13 H 0.035 0.965 14 C -0.468 4.468 15 H 0.058 0.942 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.279 1.279 22 C -0.026 4.026 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.155 4.155 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.042 0.958 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.050 0.950 44 H 0.260 0.740 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.367 -4.897 6.164 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.295 6.295 3 C 0.056 3.944 4 C -0.233 4.233 5 C -0.224 4.224 6 C 0.011 3.989 7 N -0.361 5.361 8 C -0.054 4.054 9 C 0.317 3.683 10 O -0.401 6.401 11 C -0.176 4.176 12 C 0.069 3.931 13 H 0.054 0.946 14 C -0.506 4.506 15 H 0.076 0.924 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.204 1.204 22 C -0.027 4.027 23 C -0.151 4.151 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.086 4.086 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.149 0.851 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.131 -4.521 6.214 12.716 hybrid contribution 0.816 0.692 0.330 1.120 sum -9.315 -3.829 6.545 12.011 Atomic orbital electron populations 1.22715 0.82328 1.02046 0.99897 1.87951 1.18863 1.27684 1.95015 1.22075 0.94717 0.83132 0.94512 1.22350 1.01646 1.01230 0.98062 1.22360 0.99884 1.01960 0.98200 1.21284 0.90242 1.00189 0.87233 1.47879 1.69062 1.07068 1.12043 1.21645 1.00664 0.80331 1.02745 1.21100 0.74840 0.87174 0.85179 1.90586 1.51260 1.14568 1.83652 1.21941 1.02460 1.00675 0.92480 1.17636 0.96227 0.92140 0.87097 0.94618 1.20917 0.94669 0.93590 1.41415 0.92416 1.24869 0.98243 0.95125 0.95663 1.69672 1.24477 1.09971 1.48817 0.86668 0.81399 0.80411 0.79681 1.20427 1.21450 1.20445 1.20352 0.94110 0.92646 0.95569 1.20893 1.02340 0.99395 0.92430 1.20794 1.02083 0.96159 0.96973 1.20758 1.03076 0.96274 0.97174 1.21046 1.02172 0.99560 0.93373 1.21362 0.94697 0.95225 0.97361 0.93975 0.90210 0.94286 0.91223 0.92268 0.91948 0.91587 0.93548 0.90520 0.90887 0.88800 0.93549 0.91324 0.91270 0.85079 0.93169 0.92938 0.87733 0.88148 0.88338 0.88108 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.21 101.05 1.03 1.31 16 2 O -0.38 -5.00 9.17 -35.23 -0.32 -5.32 16 3 C 0.10 1.30 0.91 -90.62 -0.08 1.22 16 4 C -0.17 -1.91 8.25 37.16 0.31 -1.61 16 5 C -0.17 -2.52 6.88 37.16 0.26 -2.26 16 6 C 0.13 2.04 4.79 -4.04 -0.02 2.03 16 7 N -0.63 -10.83 2.53 -181.57 -0.46 -11.29 16 8 C 0.09 1.31 10.07 59.85 0.60 1.91 16 9 C 0.53 11.10 5.70 -10.98 -0.06 11.04 16 10 O -0.53 -12.52 12.74 5.56 0.07 -12.45 16 11 C -0.14 -2.93 2.63 -27.88 -0.07 -3.00 16 12 C 0.09 2.12 1.97 -92.92 -0.18 1.94 16 13 H 0.04 0.88 7.91 -51.93 -0.41 0.47 16 14 C -0.47 -12.56 7.27 -34.44 -0.25 -12.81 16 15 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 16 C 0.06 1.60 5.12 -17.82 -0.09 1.51 16 17 N -0.89 -22.79 7.99 55.43 0.44 -22.34 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.03 -0.60 4.69 -104.62 -0.49 -1.09 16 23 C -0.13 -2.86 9.71 -39.58 -0.38 -3.24 16 24 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 25 C -0.15 -2.94 10.05 -39.58 -0.40 -3.33 16 26 C -0.14 -2.87 10.05 -39.58 -0.40 -3.26 16 27 C -0.07 -1.50 7.46 -39.58 -0.30 -1.80 16 28 H 0.04 0.44 6.42 -51.93 -0.33 0.11 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.35 6.42 -51.93 -0.33 0.02 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.16 6.24 -51.93 -0.32 0.84 16 35 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 36 H 0.08 1.27 7.43 -51.93 -0.39 0.89 16 37 H 0.07 0.97 8.07 -51.93 -0.42 0.56 16 38 H 0.09 1.55 7.42 -51.93 -0.39 1.17 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.89 7.11 -51.93 -0.37 0.52 16 41 H 0.07 1.00 6.43 -51.93 -0.33 0.66 16 42 H 0.13 3.02 4.67 -51.93 -0.24 2.77 16 43 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 44 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 45 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 46 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 47 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 49 H 0.14 3.14 5.18 -52.49 -0.27 2.87 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -28.88 373.78 -8.39 -37.26 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.80 Total: 6.57 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.93 Total: -14.62 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.02 Total: -33.63 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.25 Total: -17.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.88 -8.39 -37.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527013909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.379 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds