Wall clock time and date at job start Tue Mar 31 2020 12:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 114.00138 * 2 1 4 4 C 1.53000 * 109.46844 * 60.00236 * 3 2 1 5 5 C 1.52999 * 109.47170 * 300.00335 * 3 2 1 6 6 C 1.53002 * 109.47069 * 180.02562 * 3 2 1 7 7 N 1.46493 * 109.47219 * 65.00118 * 6 3 2 8 8 C 1.46501 * 120.00186 * 269.99732 * 7 6 3 9 9 C 1.34776 * 119.99808 * 90.00265 * 7 6 3 10 10 O 1.21277 * 120.00168 * 359.97438 * 9 7 6 11 11 C 1.50703 * 119.99818 * 180.27520 * 9 7 6 12 12 C 1.53003 * 109.47252 * 179.72061 * 11 9 7 13 13 H 1.08997 * 109.47166 * 304.99953 * 12 11 9 14 14 C 1.50704 * 109.46825 * 64.99879 * 12 11 9 15 15 H 1.07999 * 119.99786 * 234.67752 * 14 12 11 16 16 C 1.37868 * 120.00055 * 54.68055 * 14 12 11 17 17 N 1.31521 * 120.00028 * 4.87177 * 16 14 12 18 18 Si 1.86805 * 120.00249 * 184.86788 * 16 14 12 19 19 H 1.48501 * 109.46503 * 60.00163 * 18 16 14 20 20 H 1.48495 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47117 * 300.00295 * 18 16 14 22 22 C 1.50694 * 109.47339 * 184.99957 * 12 11 9 23 23 C 1.38232 * 120.00065 * 151.48671 * 22 12 11 24 24 C 1.38239 * 119.99732 * 179.78882 * 23 22 12 25 25 C 1.38233 * 120.00363 * 0.43809 * 24 23 22 26 26 C 1.38236 * 119.99857 * 359.81682 * 25 24 23 27 27 C 1.38235 * 120.00033 * 359.97432 * 26 25 24 28 28 H 1.08998 * 109.47555 * 59.99472 * 1 2 3 29 29 H 1.09001 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46988 * 299.99900 * 1 2 3 31 31 H 1.09000 * 109.47145 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47129 * 300.00077 * 4 3 2 33 33 H 1.08997 * 109.47190 * 60.00129 * 4 3 2 34 34 H 1.09000 * 109.47149 * 299.99925 * 5 3 2 35 35 H 1.08998 * 109.47112 * 59.99733 * 5 3 2 36 36 H 1.09000 * 109.46992 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47130 * 304.99775 * 6 3 2 38 38 H 1.09000 * 109.46977 * 185.00379 * 6 3 2 39 39 H 1.09002 * 109.47076 * 270.00434 * 8 7 6 40 40 H 1.08999 * 109.46536 * 30.00312 * 8 7 6 41 41 H 1.09003 * 109.47105 * 150.00212 * 8 7 6 42 42 H 1.08997 * 109.47212 * 299.71952 * 11 9 7 43 43 H 1.08995 * 109.47320 * 59.72215 * 11 9 7 44 44 H 0.97002 * 119.99696 * 180.02562 * 17 16 14 45 45 H 1.07994 * 120.00387 * 359.97438 * 23 22 12 46 46 H 1.08006 * 119.99779 * 180.27499 * 24 23 22 47 47 H 1.07997 * 120.00387 * 179.83226 * 25 24 23 48 48 H 1.07997 * 120.00478 * 179.97438 * 26 25 24 49 49 H 1.07996 * 120.00595 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0647 1.2493 5 6 1.5587 2.0648 -1.2492 6 6 3.5354 1.1846 -0.0006 7 7 3.9756 0.5644 -1.2527 8 6 4.1052 -0.8921 -1.3428 9 6 4.2615 1.3338 -2.3217 10 8 4.1539 2.5395 -2.2473 11 6 4.7084 0.6954 -3.6116 12 6 4.9593 1.7825 -4.6586 13 1 4.0659 2.3977 -4.7649 14 6 6.1143 2.6455 -4.2198 15 1 5.9910 3.7159 -4.1460 16 6 7.3281 2.0685 -3.9126 17 7 7.5077 0.7783 -4.0938 18 14 8.7180 3.1194 -3.2391 19 1 8.2885 3.7510 -1.9656 20 1 9.9081 2.2665 -2.9912 21 1 9.0620 4.1758 -4.2243 22 6 5.2869 1.1397 -5.9816 23 6 4.9842 1.7934 -7.1614 24 6 5.2886 1.2056 -8.3750 25 6 5.8875 -0.0398 -8.4090 26 6 6.1854 -0.6958 -7.2292 27 6 5.8849 -0.1062 -6.0156 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.0025 3.0603 1.2496 32 1 0.4722 2.1507 1.2493 33 1 1.8804 1.5237 2.1392 34 1 1.8803 1.5239 -2.1392 35 1 0.4721 2.1508 -1.2492 36 1 2.0017 3.0607 -1.2489 37 1 3.8514 0.5682 0.8410 38 1 3.9785 2.1764 0.0890 39 1 5.1148 -1.1855 -1.0550 40 1 3.3852 -1.3629 -0.6734 41 1 3.9120 -1.2114 -2.3669 42 1 5.6283 0.1363 -3.4407 43 1 3.9329 0.0183 -3.9696 44 1 8.3616 0.3724 -3.8773 45 1 4.5126 2.7646 -7.1351 46 1 5.0562 1.7184 -9.2968 47 1 6.1229 -0.5002 -9.3571 48 1 6.6529 -1.6690 -7.2556 49 1 6.1179 -0.6185 -5.0939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527013909.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:36 Heat of formation + Delta-G solvation = -63.942554 kcal Electronic energy + Delta-G solvation = -28598.416422 eV Core-core repulsion = 24911.412466 eV Total energy + Delta-G solvation = -3687.003956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.14981 -39.94216 -39.20910 -36.38934 -35.85449 -33.75961 -32.89407 -31.41124 -30.22735 -28.78803 -28.36382 -27.73096 -27.57049 -25.98952 -24.14016 -22.96130 -21.55887 -20.89682 -19.84181 -18.28475 -17.96484 -17.39581 -17.04947 -16.81248 -16.69243 -16.65679 -15.88122 -15.72089 -15.44627 -15.17468 -14.78246 -14.43147 -14.12335 -13.83336 -13.76956 -13.75118 -13.41769 -13.34246 -13.21994 -13.09398 -12.98260 -12.89769 -12.87067 -12.71391 -12.64070 -12.53168 -12.26921 -12.09793 -11.85116 -11.67244 -11.53751 -11.05634 -11.01921 -10.55186 -10.47697 -10.16749 -9.39865 -9.36707 -9.10692 -7.92370 -6.08039 0.89554 1.00933 1.37595 1.38654 1.46433 2.09119 2.33179 2.46119 2.85636 3.21730 3.38510 3.80890 3.89321 4.04628 4.14844 4.34293 4.41848 4.46709 4.50553 4.52555 4.53861 4.58078 4.65618 4.69275 4.71449 4.72312 4.82077 4.83055 4.87278 4.91182 4.95679 5.01033 5.08537 5.11723 5.15974 5.19059 5.34035 5.38856 5.54841 5.64810 5.68406 5.84307 5.91513 5.95666 6.10367 6.32659 6.38229 6.43743 6.58985 6.69933 6.85934 7.53634 7.64725 8.96791 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.004499 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.725463 B = 6222.269830 C = 7296.235613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.388 6.388 3 C 0.102 3.898 4 C -0.169 4.169 5 C -0.159 4.159 6 C 0.129 3.871 7 N -0.620 5.620 8 C 0.088 3.912 9 C 0.521 3.479 10 O -0.564 6.564 11 C -0.123 4.123 12 C 0.090 3.910 13 H 0.011 0.989 14 C -0.489 4.489 15 H 0.027 0.973 16 C 0.035 3.965 17 N -0.885 5.885 18 Si 0.928 3.072 19 H -0.289 1.289 20 H -0.276 1.276 21 H -0.283 1.283 22 C -0.050 4.050 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.081 4.081 28 H 0.037 0.963 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.261 0.739 45 H 0.101 0.899 46 H 0.132 0.868 47 H 0.136 0.864 48 H 0.127 0.873 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.705 -6.890 6.152 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C 0.062 3.938 4 C -0.227 4.227 5 C -0.217 4.217 6 C 0.005 3.995 7 N -0.354 5.354 8 C -0.054 4.054 9 C 0.312 3.688 10 O -0.442 6.442 11 C -0.163 4.163 12 C 0.071 3.929 13 H 0.030 0.970 14 C -0.526 4.526 15 H 0.045 0.955 16 C -0.164 4.164 17 N -0.524 5.524 18 Si 0.756 3.244 19 H -0.215 1.215 20 H -0.201 1.201 21 H -0.209 1.209 22 C -0.051 4.051 23 C -0.171 4.171 24 C -0.158 4.158 25 C -0.167 4.167 26 C -0.165 4.165 27 C -0.099 4.099 28 H 0.055 0.945 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.120 0.880 46 H 0.150 0.850 47 H 0.154 0.846 48 H 0.145 0.855 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.479 -6.561 6.219 13.839 hybrid contribution 0.848 1.269 0.286 1.553 sum -9.631 -5.292 6.504 12.770 Atomic orbital electron populations 1.22912 0.80646 1.03487 1.00457 1.87910 1.20646 1.27070 1.95122 1.21887 0.93452 0.83633 0.94817 1.22292 1.02597 1.00789 0.96993 1.22261 1.00914 1.00484 0.98026 1.21459 0.91736 0.99513 0.86758 1.47862 1.67735 1.08056 1.11763 1.21794 1.01673 0.78549 1.03384 1.21034 0.74905 0.86891 0.85997 1.90564 1.53178 1.16096 1.84359 1.21727 1.02303 0.99830 0.92430 1.17520 0.94211 0.92371 0.88829 0.97033 1.20878 0.96245 0.92501 1.43020 0.95461 1.25213 0.99165 0.96133 0.95910 1.69764 1.24518 1.09821 1.48299 0.86088 0.80216 0.79536 0.78530 1.21545 1.20081 1.20874 1.20319 0.95810 0.93682 0.95295 1.21069 1.03155 0.99658 0.93216 1.21154 1.00990 0.96489 0.97159 1.21194 1.01329 0.95743 0.98395 1.21366 1.01594 1.00607 0.92891 1.21308 0.95463 0.95008 0.98128 0.94486 0.88432 0.92590 0.91507 0.90743 0.90487 0.94582 0.91578 0.92809 0.88480 0.90795 0.92968 0.89153 0.91339 0.86102 0.91782 0.92881 0.88043 0.85033 0.84580 0.85542 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.21 113.37 1.16 1.54 16 2 O -0.39 -9.54 9.17 -148.98 -1.37 -10.91 16 3 C 0.10 2.69 0.91 -10.79 -0.01 2.68 16 4 C -0.17 -3.39 8.25 71.98 0.59 -2.80 16 5 C -0.16 -4.93 6.88 71.98 0.50 -4.43 16 6 C 0.13 3.88 4.79 86.38 0.41 4.30 16 7 N -0.62 -21.69 2.53 -846.76 -2.14 -23.83 16 8 C 0.09 2.50 10.07 127.77 1.29 3.79 16 9 C 0.52 22.92 5.70 87.66 0.50 23.42 16 10 O -0.56 -28.57 12.74 -3.02 -0.04 -28.61 16 11 C -0.12 -5.51 2.63 29.85 0.08 -5.43 16 12 C 0.09 4.55 1.97 -12.29 -0.02 4.53 16 13 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 14 C -0.49 -27.50 7.27 25.60 0.19 -27.31 16 15 H 0.03 1.64 7.82 -2.91 -0.02 1.62 16 16 C 0.04 1.90 5.12 84.65 0.43 2.33 16 17 N -0.89 -45.64 7.99 21.44 0.17 -45.47 16 18 Si 0.93 44.91 29.54 68.60 2.03 46.93 16 19 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 22 C -0.05 -2.38 4.69 -19.87 -0.09 -2.47 16 23 C -0.15 -6.64 9.71 22.27 0.22 -6.42 16 24 C -0.14 -5.15 10.05 22.27 0.22 -4.92 16 25 C -0.15 -5.16 10.05 22.27 0.22 -4.94 16 26 C -0.15 -5.53 10.05 22.27 0.22 -5.31 16 27 C -0.08 -3.54 7.46 22.27 0.17 -3.37 16 28 H 0.04 0.71 6.42 -2.39 -0.02 0.70 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 0.84 6.42 -2.38 -0.02 0.83 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.27 6.54 -2.39 -0.02 1.25 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.31 6.24 -2.39 -0.01 1.29 16 35 H 0.07 1.71 6.54 -2.39 -0.02 1.70 16 36 H 0.05 1.89 7.43 -2.39 -0.02 1.87 16 37 H 0.10 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.07 2.53 7.42 -2.39 -0.02 2.52 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.17 7.11 -2.39 -0.02 2.15 16 41 H 0.07 1.94 6.43 -2.39 -0.02 1.92 16 42 H 0.12 5.70 4.67 -2.39 -0.01 5.69 16 43 H 0.06 2.61 7.40 -2.39 -0.02 2.59 16 44 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 45 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 46 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 47 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 48 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 49 H 0.13 5.84 5.18 -2.91 -0.02 5.83 16 Total: -1.00 -64.37 373.78 5.65 -58.71 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.93 Total: 27.99 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 6.07 Total: -24.82 kcal Atomic # 7 Polarization: -67.33 SS G_CDS: -1.97 Total: -69.30 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -1.40 Total: -39.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.37 5.65 -58.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527013909.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.229 kcal (2) G-P(sol) polarization free energy of solvation -64.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds