Wall clock time and date at job start Tue Mar 31 2020 12:06:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42907 * 114.00181 * 2 1
4 4 C 1.52995 * 109.47239 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47066 * 174.99368 * 4 3 2
6 6 N 1.46500 * 109.47175 * 295.00077 * 4 3 2
7 7 C 1.34773 * 119.99723 * 205.00013 * 6 4 3
8 8 O 1.21285 * 120.00576 * 359.97438 * 7 6 4
9 9 C 1.50704 * 119.99987 * 179.97438 * 7 6 4
10 10 C 1.52996 * 109.47307 * 180.02562 * 9 7 6
11 11 H 1.08998 * 109.47592 * 55.00035 * 10 9 7
12 12 C 1.50708 * 109.47113 * 295.00289 * 10 9 7
13 13 H 1.08002 * 119.99681 * 325.86023 * 12 10 9
14 14 C 1.37873 * 119.99893 * 145.86370 * 12 10 9
15 15 N 1.31515 * 120.00315 * 6.10846 * 14 12 10
16 16 Si 1.86802 * 119.99630 * 186.10888 * 14 12 10
17 17 H 1.48496 * 109.47393 * 60.00148 * 16 14 12
18 18 H 1.48509 * 109.46980 * 179.97438 * 16 14 12
19 19 H 1.48495 * 109.47276 * 299.99482 * 16 14 12
20 20 C 1.50695 * 109.47414 * 175.00228 * 10 9 7
21 21 C 1.38235 * 120.00038 * 63.43085 * 20 10 9
22 22 C 1.38234 * 120.00393 * 179.78916 * 21 20 10
23 23 C 1.38241 * 119.99872 * 0.44855 * 22 21 20
24 24 C 1.38243 * 119.99543 * 359.80201 * 23 22 21
25 25 C 1.38231 * 120.00280 * 243.70717 * 20 10 9
26 26 C 1.53007 * 109.47271 * 54.99835 * 4 3 2
27 27 C 1.53001 * 109.47036 * 59.99703 * 26 4 3
28 28 C 1.52995 * 109.47271 * 179.97438 * 26 4 3
29 29 H 1.09003 * 109.46963 * 60.00070 * 1 2 3
30 30 H 1.09000 * 109.47671 * 300.00669 * 1 2 3
31 31 H 1.08996 * 109.47070 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46745 * 299.99583 * 3 2 1
33 33 H 1.08994 * 109.46980 * 59.99310 * 3 2 1
34 34 H 0.96995 * 119.99903 * 24.99850 * 6 4 3
35 35 H 1.08998 * 109.47145 * 300.00617 * 9 7 6
36 36 H 1.09000 * 109.47013 * 60.00255 * 9 7 6
37 37 H 0.97000 * 119.99867 * 180.02562 * 15 14 12
38 38 H 1.08001 * 120.00200 * 359.97438 * 21 20 10
39 39 H 1.07994 * 120.00413 * 180.27116 * 22 21 20
40 40 H 1.07996 * 120.00389 * 179.83675 * 23 22 21
41 41 H 1.07999 * 119.99809 * 180.02562 * 24 23 22
42 42 H 1.07998 * 119.99807 * 359.97438 * 25 20 10
43 43 H 1.08996 * 109.46910 * 300.00222 * 26 4 3
44 44 H 1.09004 * 109.47215 * 59.99952 * 27 26 4
45 45 H 1.08995 * 109.47552 * 180.02562 * 27 26 4
46 46 H 1.08995 * 109.47358 * 300.00316 * 27 26 4
47 47 H 1.09003 * 109.47349 * 59.99861 * 28 26 4
48 48 H 1.08995 * 109.46951 * 180.02562 * 28 26 4
49 49 H 1.09004 * 109.46720 * 299.99888 * 28 26 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.9785 2.1765 -0.0890
6 7 3.9756 0.5644 1.2527
7 6 5.2195 0.7946 1.7178
8 8 5.9745 1.5148 1.0997
9 6 5.6722 0.1570 3.0061
10 6 7.1122 0.5785 3.3054
11 1 7.1784 1.6665 3.3122
12 6 8.0282 0.0262 2.2437
13 1 7.8180 -0.9335 1.7952
14 6 9.1344 0.7461 1.8451
15 7 9.4582 1.8556 2.4727
16 14 10.1734 0.1455 0.4136
17 1 9.3347 0.0701 -0.8095
18 1 11.2960 1.0908 0.1858
19 1 10.7154 -1.2012 0.7260
20 6 7.5232 0.0419 4.6522
21 6 7.5875 -1.3229 4.8621
22 6 7.9687 -1.8153 6.0963
23 6 8.2767 -0.9428 7.1234
24 6 8.2073 0.4221 6.9150
25 6 7.8303 0.9143 5.6795
26 6 3.9790 0.3193 -1.1807
27 6 3.5192 0.9670 -2.4883
28 6 5.5043 0.1990 -1.1804
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 1.6887 1.8463 -0.8900
33 1 1.6886 1.8464 0.8899
34 1 3.3719 -0.0118 1.7469
35 1 5.0227 0.4806 3.8195
36 1 5.6230 -0.9277 2.9116
37 1 10.2362 2.3623 2.1919
38 1 7.3428 -2.0046 4.0610
39 1 8.0232 -2.8815 6.2589
40 1 8.5720 -1.3274 8.0884
41 1 8.4483 1.1038 7.7172
42 1 7.7761 1.9806 5.5167
43 1 3.5359 -0.6725 -1.0911
44 1 3.9623 1.9589 -2.5780
45 1 3.8348 0.3504 -3.3299
46 1 2.4327 1.0531 -2.4888
47 1 5.8322 -0.2622 -0.2488
48 1 5.8202 -0.4170 -2.0222
49 1 5.9469 1.1911 -1.2702
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000527248533.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:58
Heat of formation + Delta-G solvation = -71.824620 kcal
Electronic energy + Delta-G solvation = -27894.352838 eV
Core-core repulsion = 24207.007090 eV
Total energy + Delta-G solvation = -3687.345748 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-39.62374 -38.41071 -37.78716 -35.72308 -33.85587 -32.79282 -31.36346 -29.96516
-29.48923 -28.51432 -26.69035 -26.35465 -25.25983 -23.21977 -22.42636 -21.57258
-20.19949 -19.66191 -19.13066 -16.63711 -16.52642 -16.32206 -16.10953 -15.75584
-15.31449 -15.02832 -14.64323 -14.40488 -14.04930 -13.85117 -13.52470 -13.23322
-12.90286 -12.50517 -12.40648 -12.28758 -12.21458 -12.01744 -11.86136 -11.81143
-11.63426 -11.50247 -11.37763 -10.84144 -10.78784 -10.67317 -10.54413 -10.35906
-10.28706 -10.20423 -10.00121 -9.78904 -9.38458 -8.98882 -8.74890 -8.33864
-8.26238 -8.00063 -7.55451 -5.87764 -3.86565 2.33342 2.39410 3.42840
3.46298 3.51129 3.55461 3.71547 3.84965 4.57194 4.79708 4.80833
4.96158 5.12364 5.15666 5.28089 5.33085 5.40414 5.45643 5.47419
5.55869 5.68564 5.70292 5.77360 5.88284 5.91890 6.01328 6.13101
6.17353 6.24535 6.28011 6.29365 6.34716 6.45751 6.47158 6.59569
6.72692 6.87150 6.94845 6.96837 7.05287 7.09994 7.15153 7.35334
7.50062 7.58603 7.91347 8.00169 8.10909 8.26334 8.45132 9.12757
9.22722 9.75131 11.22455
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.004314 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.899999 B = 6488.802880 C = 8155.053863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.383 6.383
3 C 0.052 3.948
4 C 0.157 3.843
5 H 0.095 0.905
6 N -0.742 5.742
7 C 0.512 3.488
8 O -0.491 6.491
9 C -0.123 4.123
10 C 0.081 3.919
11 H 0.071 0.929
12 C -0.488 4.488
13 H 0.049 0.951
14 C 0.081 3.919
15 N -0.882 5.882
16 Si 0.882 3.118
17 H -0.276 1.276
18 H -0.290 1.290
19 H -0.281 1.281
20 C -0.020 4.020
21 C -0.115 4.115
22 C -0.132 4.132
23 C -0.157 4.157
24 C -0.129 4.129
25 C -0.119 4.119
26 C -0.100 4.100
27 C -0.144 4.144
28 C -0.140 4.140
29 H 0.038 0.962
30 H 0.039 0.961
31 H 0.084 0.916
32 H 0.061 0.939
33 H 0.053 0.947
34 H 0.395 0.605
35 H 0.063 0.937
36 H 0.075 0.925
37 H 0.258 0.742
38 H 0.113 0.887
39 H 0.105 0.895
40 H 0.103 0.897
41 H 0.105 0.895
42 H 0.113 0.887
43 H 0.074 0.926
44 H 0.053 0.947
45 H 0.052 0.948
46 H 0.050 0.950
47 H 0.067 0.933
48 H 0.036 0.964
49 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.031 -2.635 -1.449 16.311
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.302 6.302
3 C -0.025 4.025
4 C 0.052 3.948
5 H 0.113 0.887
6 N -0.397 5.397
7 C 0.299 3.701
8 O -0.363 6.363
9 C -0.163 4.163
10 C 0.062 3.938
11 H 0.090 0.910
12 C -0.525 4.525
13 H 0.067 0.933
14 C -0.122 4.122
15 N -0.519 5.519
16 Si 0.711 3.289
17 H -0.201 1.201
18 H -0.216 1.216
19 H -0.206 1.206
20 C -0.020 4.020
21 C -0.133 4.133
22 C -0.150 4.150
23 C -0.175 4.175
24 C -0.147 4.147
25 C -0.137 4.137
26 C -0.120 4.120
27 C -0.202 4.202
28 C -0.198 4.198
29 H 0.057 0.943
30 H 0.058 0.942
31 H 0.102 0.898
32 H 0.079 0.921
33 H 0.071 0.929
34 H 0.228 0.772
35 H 0.081 0.919
36 H 0.093 0.907
37 H 0.068 0.932
38 H 0.131 0.869
39 H 0.123 0.877
40 H 0.121 0.879
41 H 0.123 0.877
42 H 0.131 0.869
43 H 0.093 0.907
44 H 0.072 0.928
45 H 0.072 0.928
46 H 0.069 0.931
47 H 0.086 0.914
48 H 0.056 0.944
49 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -15.175 -2.083 -1.906 15.436
hybrid contribution 0.260 -0.429 -0.594 0.778
sum -14.915 -2.512 -2.499 15.330
Atomic orbital electron populations
1.22720 0.81439 1.02606 0.99767 1.87922 1.19240 1.27690 1.95344
1.22932 0.93840 0.85041 1.00663 1.20941 0.90423 0.98243 0.85215
0.88677 1.46191 1.16006 1.52835 1.24679 1.20813 0.80294 0.81605
0.87404 1.90761 1.51805 1.35649 1.58035 1.21794 1.00660 1.00558
0.93321 1.17823 0.88174 0.99236 0.88561 0.91034 1.20610 1.08644
1.04203 1.19077 0.93295 1.24766 0.97159 0.94636 0.95664 1.69903
1.26396 1.15641 1.39990 0.86819 0.79825 0.78237 0.84036 1.20108
1.21570 1.20647 1.20756 0.93132 0.92615 0.95539 1.20947 1.00743
0.95822 0.95819 1.20972 1.01480 0.98409 0.94156 1.20787 1.04538
0.93702 0.98448 1.20980 1.01382 0.95038 0.97270 1.21084 1.00505
0.99687 0.92465 1.21435 0.97330 0.99658 0.93584 1.21849 1.00281
1.00794 0.97255 1.21891 0.93657 1.02470 1.01734 0.94324 0.94199
0.89754 0.92084 0.92860 0.77175 0.91905 0.90693 0.93190 0.86938
0.87728 0.87869 0.87708 0.86886 0.90750 0.92795 0.92849 0.93123
0.91356 0.94450 0.91980
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 11.01 101.05 1.11 1.35 16
2 O -0.38 -4.18 9.55 -35.23 -0.34 -4.51 16
3 C 0.05 0.56 5.17 37.16 0.19 0.75 16
4 C 0.16 2.18 2.24 -67.93 -0.15 2.03 16
5 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16
6 N -0.74 -11.25 4.95 -53.80 -0.27 -11.51 16
7 C 0.51 9.96 5.94 -10.99 -0.07 9.90 16
8 O -0.49 -11.66 12.11 5.55 0.07 -11.60 16
9 C -0.12 -2.37 4.95 -27.88 -0.14 -2.51 16
10 C 0.08 1.92 1.67 -92.92 -0.16 1.77 16
11 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16
12 C -0.49 -12.98 6.37 -34.44 -0.22 -13.20 16
13 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16
14 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16
15 N -0.88 -25.92 12.87 55.43 0.71 -25.21 16
16 Si 0.88 22.34 29.54 -169.99 -5.02 17.32 16
17 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
18 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
19 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16
20 C -0.02 -0.44 4.77 -104.63 -0.50 -0.94 16
21 C -0.12 -2.35 8.86 -39.58 -0.35 -2.70 16
22 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16
23 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16
24 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16
25 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16
26 C -0.10 -1.43 2.49 -90.62 -0.23 -1.66 16
27 C -0.14 -1.71 8.84 37.16 0.33 -1.38 16
28 C -0.14 -2.52 7.72 37.16 0.29 -2.23 16
29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16
30 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
32 H 0.06 0.57 6.71 -51.93 -0.35 0.22 16
33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.39 5.16 8.38 -40.82 -0.34 4.82 16
35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
36 H 0.07 1.36 7.77 -51.93 -0.40 0.96 16
37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
38 H 0.11 2.22 7.76 -52.49 -0.41 1.82 16
39 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16
40 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16
41 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16
42 H 0.11 2.43 7.95 -52.49 -0.42 2.01 16
43 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16
44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
45 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
46 H 0.05 0.52 6.54 -51.93 -0.34 0.18 16
47 H 0.07 1.41 5.77 -51.93 -0.30 1.11 16
48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
49 H 0.06 1.23 7.53 -51.93 -0.39 0.84 16
LS Contribution 391.61 15.07 5.90 5.90
Total: -1.00 -31.29 391.61 -8.80 -40.08
By element:
Atomic # 1 Polarization: 16.17 SS G_CDS: -8.29 Total: 7.87 kcal
Atomic # 6 Polarization: -16.79 SS G_CDS: -1.56 Total: -18.34 kcal
Atomic # 7 Polarization: -37.17 SS G_CDS: 0.45 Total: -36.72 kcal
Atomic # 8 Polarization: -15.84 SS G_CDS: -0.27 Total: -16.11 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -31.29 -8.80 -40.08 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527248533.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.742 kcal
(2) G-P(sol) polarization free energy of solvation -31.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.029 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds