Wall clock time and date at job start Tue Mar 31 2020 12:06:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42896 * 1
3 3 C 1.42907 * 114.00181 * 2 1
4 4 C 1.52995 * 109.47239 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.47066 * 174.99368 * 4 3 2
6 6 N 1.46500 * 109.47175 * 295.00077 * 4 3 2
7 7 C 1.34773 * 119.99723 * 205.00013 * 6 4 3
8 8 O 1.21285 * 120.00576 * 359.97438 * 7 6 4
9 9 C 1.50704 * 119.99987 * 179.97438 * 7 6 4
10 10 C 1.52996 * 109.47307 * 180.02562 * 9 7 6
11 11 H 1.08998 * 109.47592 * 55.00035 * 10 9 7
12 12 C 1.50708 * 109.47113 * 295.00289 * 10 9 7
13 13 H 1.08002 * 119.99681 * 325.86023 * 12 10 9
14 14 C 1.37873 * 119.99893 * 145.86370 * 12 10 9
15 15 N 1.31515 * 120.00315 * 6.10846 * 14 12 10
16 16 Si 1.86802 * 119.99630 * 186.10888 * 14 12 10
17 17 H 1.48496 * 109.47393 * 60.00148 * 16 14 12
18 18 H 1.48509 * 109.46980 * 179.97438 * 16 14 12
19 19 H 1.48495 * 109.47276 * 299.99482 * 16 14 12
20 20 C 1.50695 * 109.47414 * 175.00228 * 10 9 7
21 21 C 1.38235 * 120.00038 * 63.43085 * 20 10 9
22 22 C 1.38234 * 120.00393 * 179.78916 * 21 20 10
23 23 C 1.38241 * 119.99872 * 0.44855 * 22 21 20
24 24 C 1.38243 * 119.99543 * 359.80201 * 23 22 21
25 25 C 1.38231 * 120.00280 * 243.70717 * 20 10 9
26 26 C 1.53007 * 109.47271 * 54.99835 * 4 3 2
27 27 C 1.53001 * 109.47036 * 59.99703 * 26 4 3
28 28 C 1.52995 * 109.47271 * 179.97438 * 26 4 3
29 29 H 1.09003 * 109.46963 * 60.00070 * 1 2 3
30 30 H 1.09000 * 109.47671 * 300.00669 * 1 2 3
31 31 H 1.08996 * 109.47070 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.46745 * 299.99583 * 3 2 1
33 33 H 1.08994 * 109.46980 * 59.99310 * 3 2 1
34 34 H 0.96995 * 119.99903 * 24.99850 * 6 4 3
35 35 H 1.08998 * 109.47145 * 300.00617 * 9 7 6
36 36 H 1.09000 * 109.47013 * 60.00255 * 9 7 6
37 37 H 0.97000 * 119.99867 * 180.02562 * 15 14 12
38 38 H 1.08001 * 120.00200 * 359.97438 * 21 20 10
39 39 H 1.07994 * 120.00413 * 180.27116 * 22 21 20
40 40 H 1.07996 * 120.00389 * 179.83675 * 23 22 21
41 41 H 1.07999 * 119.99809 * 180.02562 * 24 23 22
42 42 H 1.07998 * 119.99807 * 359.97438 * 25 20 10
43 43 H 1.08996 * 109.46910 * 300.00222 * 26 4 3
44 44 H 1.09004 * 109.47215 * 59.99952 * 27 26 4
45 45 H 1.08995 * 109.47552 * 180.02562 * 27 26 4
46 46 H 1.08995 * 109.47358 * 300.00316 * 27 26 4
47 47 H 1.09003 * 109.47349 * 59.99861 * 28 26 4
48 48 H 1.08995 * 109.46951 * 180.02562 * 28 26 4
49 49 H 1.09004 * 109.46720 * 299.99888 * 28 26 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 1 3.9785 2.1765 -0.0890
6 7 3.9756 0.5644 1.2527
7 6 5.2195 0.7946 1.7178
8 8 5.9745 1.5148 1.0997
9 6 5.6722 0.1570 3.0061
10 6 7.1122 0.5785 3.3054
11 1 7.1784 1.6665 3.3122
12 6 8.0282 0.0262 2.2437
13 1 7.8180 -0.9335 1.7952
14 6 9.1344 0.7461 1.8451
15 7 9.4582 1.8556 2.4727
16 14 10.1734 0.1455 0.4136
17 1 9.3347 0.0701 -0.8095
18 1 11.2960 1.0908 0.1858
19 1 10.7154 -1.2012 0.7260
20 6 7.5232 0.0419 4.6522
21 6 7.5875 -1.3229 4.8621
22 6 7.9687 -1.8153 6.0963
23 6 8.2767 -0.9428 7.1234
24 6 8.2073 0.4221 6.9150
25 6 7.8303 0.9143 5.6795
26 6 3.9790 0.3193 -1.1807
27 6 3.5192 0.9670 -2.4883
28 6 5.5043 0.1990 -1.1804
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 -1.0276 -0.0005
32 1 1.6887 1.8463 -0.8900
33 1 1.6886 1.8464 0.8899
34 1 3.3719 -0.0118 1.7469
35 1 5.0227 0.4806 3.8195
36 1 5.6230 -0.9277 2.9116
37 1 10.2362 2.3623 2.1919
38 1 7.3428 -2.0046 4.0610
39 1 8.0232 -2.8815 6.2589
40 1 8.5720 -1.3274 8.0884
41 1 8.4483 1.1038 7.7172
42 1 7.7761 1.9806 5.5167
43 1 3.5359 -0.6725 -1.0911
44 1 3.9623 1.9589 -2.5780
45 1 3.8348 0.3504 -3.3299
46 1 2.4327 1.0531 -2.4888
47 1 5.8322 -0.2622 -0.2488
48 1 5.8202 -0.4170 -2.0222
49 1 5.9469 1.1911 -1.2702
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000527248533.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:06:55
Heat of formation + Delta-G solvation = -90.438714 kcal
Electronic energy + Delta-G solvation = -27895.160005 eV
Core-core repulsion = 24207.007090 eV
Total energy + Delta-G solvation = -3688.152916 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.53 seconds
Orbital eigenvalues (eV)
-41.00747 -39.86883 -38.92076 -36.90945 -35.65797 -34.18845 -33.30471 -31.48630
-30.74501 -29.86354 -27.96529 -27.40557 -26.76290 -24.67814 -23.78976 -23.10980
-21.71118 -20.90349 -20.72396 -18.47931 -17.92952 -17.53413 -17.16346 -17.05007
-16.51603 -16.32163 -16.13083 -15.96505 -15.56962 -15.42554 -14.73724 -14.68524
-14.21338 -14.04961 -13.93896 -13.69157 -13.48131 -13.44142 -13.17939 -13.11732
-12.96463 -12.83930 -12.79612 -12.52995 -12.42221 -12.29117 -12.02230 -11.80858
-11.66338 -11.58502 -11.52089 -11.27829 -10.92146 -10.57552 -10.51743 -10.22694
-9.71711 -9.52701 -9.16617 -8.01499 -6.02430 0.79426 0.86173 1.35024
1.39520 1.43972 2.09707 2.47627 2.48599 2.89849 3.20852 3.39423
3.75550 3.95406 4.15754 4.25904 4.28017 4.37141 4.40195 4.42293
4.44391 4.52213 4.57794 4.63954 4.64217 4.68080 4.73801 4.79136
4.81259 4.90644 4.95058 4.96278 5.02225 5.04309 5.10451 5.24323
5.28140 5.39700 5.45411 5.54897 5.57866 5.67177 5.80185 5.82763
5.85378 5.97799 6.20547 6.26476 6.44873 6.49150 6.91146 7.04472
7.59877 7.74150 9.08172
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011913 B = 0.004314 C = 0.003433
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2349.899999 B = 6488.802880 C = 8155.053863
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.402 6.402
3 C 0.063 3.937
4 C 0.153 3.847
5 H 0.075 0.925
6 N -0.723 5.723
7 C 0.512 3.488
8 O -0.543 6.543
9 C -0.117 4.117
10 C 0.085 3.915
11 H 0.025 0.975
12 C -0.476 4.476
13 H 0.043 0.957
14 C 0.029 3.971
15 N -0.917 5.917
16 Si 0.927 3.073
17 H -0.281 1.281
18 H -0.290 1.290
19 H -0.270 1.270
20 C -0.044 4.044
21 C -0.128 4.128
22 C -0.127 4.127
23 C -0.149 4.149
24 C -0.128 4.128
25 C -0.143 4.143
26 C -0.092 4.092
27 C -0.138 4.138
28 C -0.133 4.133
29 H 0.051 0.949
30 H 0.048 0.952
31 H 0.094 0.906
32 H 0.082 0.918
33 H 0.063 0.937
34 H 0.409 0.591
35 H 0.087 0.913
36 H 0.089 0.911
37 H 0.252 0.748
38 H 0.113 0.887
39 H 0.140 0.860
40 H 0.143 0.857
41 H 0.132 0.868
42 H 0.094 0.906
43 H 0.078 0.922
44 H 0.049 0.951
45 H 0.058 0.942
46 H 0.074 0.926
47 H 0.036 0.964
48 H 0.043 0.957
49 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.125 -4.704 -0.550 18.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.321 6.321
3 C -0.014 4.014
4 C 0.048 3.952
5 H 0.093 0.907
6 N -0.378 5.378
7 C 0.299 3.701
8 O -0.418 6.418
9 C -0.158 4.158
10 C 0.066 3.934
11 H 0.043 0.957
12 C -0.514 4.514
13 H 0.061 0.939
14 C -0.170 4.170
15 N -0.557 5.557
16 Si 0.754 3.246
17 H -0.207 1.207
18 H -0.216 1.216
19 H -0.195 1.195
20 C -0.045 4.045
21 C -0.146 4.146
22 C -0.145 4.145
23 C -0.166 4.166
24 C -0.146 4.146
25 C -0.162 4.162
26 C -0.111 4.111
27 C -0.196 4.196
28 C -0.191 4.191
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.113 0.887
32 H 0.100 0.900
33 H 0.081 0.919
34 H 0.244 0.756
35 H 0.105 0.895
36 H 0.108 0.892
37 H 0.061 0.939
38 H 0.131 0.869
39 H 0.157 0.843
40 H 0.161 0.839
41 H 0.150 0.850
42 H 0.112 0.888
43 H 0.096 0.904
44 H 0.068 0.932
45 H 0.077 0.923
46 H 0.093 0.907
47 H 0.055 0.945
48 H 0.062 0.938
49 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -17.325 -4.192 -1.004 17.854
hybrid contribution 0.814 0.150 -0.795 1.147
sum -16.512 -4.042 -1.799 17.094
Atomic orbital electron populations
1.22908 0.79560 1.03691 1.00832 1.87884 1.21216 1.27469 1.95565
1.22775 0.90907 0.85531 1.02180 1.21043 0.93085 0.96910 0.84186
0.90739 1.45963 1.14638 1.52121 1.25041 1.20848 0.81139 0.80935
0.87186 1.90751 1.53610 1.38061 1.59389 1.21669 0.98548 1.01293
0.94253 1.17595 0.90244 0.96318 0.89228 0.95668 1.20857 1.08168
1.03356 1.19025 0.93901 1.25373 0.98723 0.95142 0.97713 1.70037
1.26996 1.17021 1.41600 0.86105 0.78564 0.78209 0.81697 1.20742
1.21631 1.19485 1.20586 0.95034 0.93856 0.94996 1.21028 1.01587
0.94795 0.97231 1.21364 0.99673 1.00433 0.93024 1.21256 1.02513
0.92933 0.99932 1.21287 1.00227 0.96479 0.96639 1.21101 1.02209
0.98849 0.94019 1.21356 0.94322 1.00227 0.95238 1.21799 1.01751
1.00320 0.95723 1.21792 0.96646 1.00435 1.00222 0.93069 0.93310
0.88747 0.90043 0.91883 0.75563 0.89505 0.89248 0.93892 0.86868
0.84264 0.83903 0.85049 0.88790 0.90379 0.93225 0.92292 0.90677
0.94509 0.93769 0.94806
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.32 11.01 113.37 1.25 1.57 16
2 O -0.40 -7.63 9.55 -148.98 -1.42 -9.05 16
3 C 0.06 1.20 5.17 71.98 0.37 1.57 16
4 C 0.15 4.17 2.24 44.99 0.10 4.27 16
5 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16
6 N -0.72 -21.85 4.95 -442.53 -2.19 -24.04 16
7 C 0.51 20.64 5.94 87.66 0.52 21.16 16
8 O -0.54 -27.42 12.11 -3.05 -0.04 -27.46 16
9 C -0.12 -4.63 4.95 29.85 0.15 -4.49 16
10 C 0.09 4.24 1.67 -12.29 -0.02 4.22 16
11 H 0.02 1.47 6.98 -2.39 -0.02 1.45 16
12 C -0.48 -26.37 6.37 25.60 0.16 -26.21 16
13 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16
14 C 0.03 1.71 5.45 84.65 0.46 2.17 16
15 N -0.92 -56.84 12.87 21.45 0.28 -56.56 16
16 Si 0.93 47.50 29.54 68.60 2.03 49.53 16
17 H -0.28 -14.52 7.11 99.48 0.71 -13.81 16
18 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16
19 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16
20 C -0.04 -2.00 4.77 -19.87 -0.09 -2.09 16
21 C -0.13 -5.11 8.86 22.27 0.20 -4.92 16
22 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16
23 C -0.15 -4.70 10.05 22.27 0.22 -4.48 16
24 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16
25 C -0.14 -6.23 9.67 22.27 0.22 -6.02 16
26 C -0.09 -2.57 2.49 -10.79 -0.03 -2.60 16
27 C -0.14 -3.06 8.84 71.98 0.64 -2.42 16
28 C -0.13 -4.98 7.72 71.98 0.56 -4.42 16
29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.08 1.25 6.71 -2.39 -0.02 1.23 16
33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
34 H 0.41 10.16 8.38 -92.71 -0.78 9.38 16
35 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16
36 H 0.09 3.24 7.77 -2.39 -0.02 3.22 16
37 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16
38 H 0.11 4.39 7.76 -2.91 -0.02 4.37 16
39 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16
40 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16
41 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16
42 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16
43 H 0.08 2.16 7.56 -2.39 -0.02 2.14 16
44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16
45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
46 H 0.07 1.31 6.54 -2.39 -0.02 1.29 16
47 H 0.04 1.57 5.77 -2.39 -0.01 1.56 16
48 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16
49 H 0.03 1.41 7.53 -2.39 -0.02 1.40 16
Total: -1.00 -72.76 391.61 3.94 -68.81
By element:
Atomic # 1 Polarization: 29.68 SS G_CDS: 0.14 Total: 29.83 kcal
Atomic # 6 Polarization: -36.20 SS G_CDS: 5.15 Total: -31.05 kcal
Atomic # 7 Polarization: -78.69 SS G_CDS: -1.91 Total: -80.60 kcal
Atomic # 8 Polarization: -35.05 SS G_CDS: -1.46 Total: -36.51 kcal
Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal
Total: -72.76 3.94 -68.81 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527248533.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.625 kcal
(2) G-P(sol) polarization free energy of solvation -72.757 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.54 seconds