Wall clock time and date at job start Tue Mar 31 2020 13:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46959 * 2 1 4 4 H 1.08999 * 115.56459 * 29.31581 * 3 2 1 5 5 C 1.53071 * 117.49551 * 243.59814 * 3 2 1 6 6 C 1.52994 * 59.98676 * 252.51386 * 5 3 2 7 7 H 1.09005 * 117.49534 * 107.50140 * 6 5 3 8 8 C 1.52997 * 117.50201 * 252.49338 * 6 5 3 9 9 N 1.46895 * 109.47462 * 243.75057 * 8 6 5 10 10 C 1.46900 * 111.00127 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47178 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.46749 * 304.99576 * 11 10 9 13 13 O 1.42901 * 109.47352 * 64.99834 * 11 10 9 14 14 C 1.53001 * 109.47006 * 184.99852 * 11 10 9 15 15 O 1.42900 * 109.47204 * 175.00273 * 14 11 10 16 16 C 1.35675 * 117.00109 * 180.02562 * 15 14 11 17 17 C 1.39311 * 119.81797 * 359.71549 * 16 15 14 18 18 C 1.36436 * 120.18712 * 179.76101 * 17 16 15 19 19 C 1.40835 * 119.80760 * 0.51852 * 18 17 16 20 20 C 1.41211 * 120.17819 * 179.76250 * 19 18 17 21 21 H 1.08002 * 120.00285 * 24.51969 * 20 19 18 22 22 C 1.39894 * 120.00182 * 204.52881 * 20 19 18 23 23 N 1.30883 * 119.99845 * 17.92955 * 22 20 19 24 24 Si 1.86799 * 120.00364 * 197.93254 * 22 20 19 25 25 H 1.48501 * 109.46708 * 89.99459 * 24 22 20 26 26 H 1.48491 * 109.47373 * 209.99788 * 24 22 20 27 27 H 1.48507 * 109.46873 * 330.00031 * 24 22 20 28 28 C 1.40836 * 119.64422 * 359.73688 * 19 18 17 29 29 C 1.36439 * 119.80859 * 0.02562 * 28 19 18 30 30 H 1.08996 * 109.46977 * 300.00082 * 1 2 3 31 31 H 1.08995 * 109.47062 * 59.99886 * 1 2 3 32 32 H 1.08998 * 109.46842 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47562 * 240.00627 * 2 1 3 34 34 H 1.08995 * 109.47804 * 120.00150 * 2 1 3 35 35 H 1.09010 * 117.51246 * 145.03608 * 5 3 2 36 36 H 1.09001 * 117.51536 * 0.02562 * 5 3 2 37 37 H 1.08999 * 109.46640 * 123.74749 * 8 6 5 38 38 H 1.09000 * 109.46967 * 3.75742 * 8 6 5 39 39 H 1.00899 * 111.00286 * 56.04457 * 9 8 6 40 40 H 1.09001 * 109.47544 * 59.99444 * 10 9 8 41 41 H 1.09007 * 109.46881 * 299.99880 * 10 9 8 42 42 H 0.96694 * 113.99792 * 59.99339 * 13 11 10 43 43 H 1.09004 * 109.46814 * 294.99804 * 14 11 10 44 44 H 1.08997 * 109.47239 * 54.99677 * 14 11 10 45 45 H 1.08005 * 119.90662 * 0.02562 * 17 16 15 46 46 H 1.08001 * 120.09634 * 180.25458 * 18 17 16 47 47 H 0.96994 * 120.00021 * 180.02562 * 23 22 20 48 48 H 1.07991 * 120.09524 * 180.02562 * 28 19 18 49 49 H 1.08000 * 119.90381 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3884 2.1718 0.4814 5 6 2.8448 1.9076 -1.2162 6 6 3.5501 1.6580 0.1183 7 1 4.1803 0.7721 0.1965 8 6 4.0301 2.8805 0.9032 9 7 5.4952 2.8524 1.0057 10 6 5.9929 4.0135 1.7554 11 6 7.5192 3.9497 1.8404 12 1 7.8195 2.9939 2.2698 13 8 8.0750 4.0791 0.5303 14 6 8.0287 5.0890 2.7253 15 8 9.4413 4.9615 2.8996 16 6 10.0547 5.8992 3.6647 17 6 9.3062 6.9280 4.2323 18 6 9.9145 7.8722 5.0069 19 6 11.3048 7.8108 5.2231 20 6 11.9432 8.7867 6.0193 21 1 11.3807 9.3261 6.7670 22 6 13.3044 9.0551 5.8396 23 7 13.9046 8.6839 4.7373 24 14 14.2653 9.9432 7.1728 25 1 14.8399 8.9489 8.1143 26 1 15.3620 10.7290 6.5525 27 1 13.3577 10.8575 7.9115 28 6 12.0550 6.7705 4.6412 29 6 11.4304 5.8315 3.8732 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.7226 2.9429 -1.5350 36 1 3.0105 1.1861 -2.0162 37 1 3.5955 2.8640 1.9027 38 1 3.7192 3.7887 0.3869 39 1 5.9207 2.8019 0.0923 40 1 5.5719 4.0046 2.7608 41 1 5.6957 4.9299 1.2453 42 1 7.8483 4.9079 0.0869 43 1 7.8060 6.0449 2.2511 44 1 7.5370 5.0422 3.6969 45 1 8.2407 6.9759 4.0621 46 1 9.3322 8.6668 5.4496 47 1 14.8484 8.8697 4.6128 48 1 13.1214 6.7161 4.8025 49 1 12.0041 5.0328 3.4266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566119975.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:10 Heat of formation + Delta-G solvation = -63.086547 kcal Electronic energy + Delta-G solvation = -25105.545773 eV Core-core repulsion = 21418.578936 eV Total energy + Delta-G solvation = -3686.966837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -39.20206 -38.74993 -37.69882 -36.17101 -35.06641 -33.31433 -32.49135 -30.65011 -29.59730 -28.97976 -26.94365 -24.85746 -24.21650 -23.78142 -22.01138 -21.09455 -20.75609 -20.55707 -20.53602 -17.35963 -17.26302 -16.61274 -16.47599 -16.00284 -15.27888 -15.19503 -15.07262 -14.75982 -14.46128 -14.01390 -13.93029 -13.89203 -13.55638 -13.19136 -12.79976 -12.76350 -12.47273 -12.25311 -12.19797 -12.13619 -11.77712 -11.71929 -11.60785 -11.38857 -11.36042 -11.15262 -10.97855 -10.80031 -10.59134 -10.31531 -10.17582 -9.97228 -9.93381 -9.81131 -9.32881 -9.02259 -8.72706 -7.64067 -7.02963 -6.71933 -4.25367 2.78112 2.95337 3.08920 3.12131 3.21806 3.29900 3.56120 3.95441 4.09843 4.34779 4.40154 4.47435 4.61572 4.62442 4.77076 4.89575 4.94172 4.96065 5.00020 5.08371 5.14288 5.28111 5.32158 5.35799 5.42635 5.46337 5.50751 5.58923 5.61821 5.67173 5.67770 5.72959 5.87050 5.99930 6.05860 6.06652 6.23455 6.68659 6.74073 6.97974 7.11367 7.12267 7.18941 7.46445 7.55803 7.62454 7.79362 8.00921 8.20828 8.45725 8.65761 8.90197 8.99077 10.22514 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.046866 B = 0.001570 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.301082 B =17829.794435 C =18140.806505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.146 4.146 4 H 0.103 0.897 5 C -0.179 4.179 6 C -0.147 4.147 7 H 0.114 0.886 8 C 0.090 3.910 9 N -0.682 5.682 10 C 0.032 3.968 11 C 0.112 3.888 12 H 0.115 0.885 13 O -0.551 6.551 14 C 0.039 3.961 15 O -0.317 6.317 16 C -0.009 4.009 17 C -0.168 4.168 18 C -0.199 4.199 19 C 0.088 3.912 20 C -0.464 4.464 21 H 0.076 0.924 22 C 0.075 3.925 23 N -0.798 5.798 24 Si 0.908 3.092 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.263 1.263 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.350 0.650 40 H 0.084 0.916 41 H 0.035 0.965 42 H 0.369 0.631 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.280 0.720 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.211 -11.447 -9.230 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.165 4.165 4 H 0.121 0.879 5 C -0.216 4.216 6 C -0.165 4.165 7 H 0.132 0.868 8 C -0.040 4.040 9 N -0.314 5.314 10 C -0.098 4.098 11 C 0.052 3.948 12 H 0.133 0.867 13 O -0.355 6.355 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.052 4.052 17 C -0.187 4.187 18 C -0.218 4.218 19 C 0.085 3.915 20 C -0.494 4.494 21 H 0.094 0.906 22 C -0.142 4.142 23 N -0.425 5.425 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.187 1.187 28 C -0.152 4.152 29 C -0.138 4.138 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.169 0.831 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.216 0.784 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.143 0.857 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.645 -12.578 -8.751 24.915 hybrid contribution -0.130 2.043 -0.119 2.050 sum -19.775 -10.536 -8.870 24.099 Atomic orbital electron populations 1.21746 0.95501 1.01590 1.01865 1.21120 0.95904 0.94063 1.02088 1.22470 0.93407 0.98160 1.02436 0.87923 1.23255 1.04534 1.02179 0.91664 1.22427 0.94682 1.00479 0.98929 0.86843 1.21515 0.88051 0.94741 0.99644 1.60313 1.05334 1.42010 1.23770 1.22538 0.95586 0.91736 0.99918 1.21965 0.90018 0.99778 0.83009 0.86709 1.86647 1.76625 1.43186 1.29046 1.23084 0.83296 0.98041 0.99380 1.85889 1.19220 1.49785 1.68347 1.18629 0.92278 0.92979 1.01362 1.20391 0.97314 0.97619 1.03394 1.20551 0.95632 1.00491 1.05172 1.17601 0.90809 0.91777 0.91282 1.19469 0.93843 1.18590 1.17521 0.90556 1.25876 0.98125 0.94847 0.95319 1.69835 1.12124 1.37745 1.22765 0.86326 0.79293 0.79748 0.81412 1.19310 1.20381 1.18727 1.20982 1.00211 0.93709 1.00336 1.19846 0.90787 1.00597 1.02522 0.92676 0.92705 0.92715 0.91888 0.91501 0.89079 0.88797 0.90681 0.95233 0.83113 0.89767 0.94726 0.78395 0.93091 0.92345 0.88989 0.88788 0.90909 0.85660 0.88413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.87 37.16 0.37 -0.42 16 2 C -0.09 -0.56 6.22 -26.73 -0.17 -0.73 16 3 C -0.15 -0.96 5.46 -90.58 -0.49 -1.46 16 4 H 0.10 0.66 8.07 -51.93 -0.42 0.24 16 5 C -0.18 -1.19 9.83 -26.70 -0.26 -1.45 16 6 C -0.15 -1.10 5.66 -90.62 -0.51 -1.61 16 7 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 8 C 0.09 0.73 5.97 -3.83 -0.02 0.70 16 9 N -0.68 -6.47 6.50 -113.78 -0.74 -7.21 16 10 C 0.03 0.31 5.36 -3.82 -0.02 0.29 16 11 C 0.11 1.41 3.49 -26.73 -0.09 1.31 16 12 H 0.12 1.60 8.14 -51.93 -0.42 1.17 16 13 O -0.55 -7.25 12.82 -40.09 -0.51 -7.77 16 14 C 0.04 0.60 4.36 37.16 0.16 0.76 16 15 O -0.32 -6.56 10.09 -23.58 -0.24 -6.79 16 16 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 17 C -0.17 -3.82 8.96 -39.83 -0.36 -4.17 16 18 C -0.20 -4.90 9.74 -39.25 -0.38 -5.29 16 19 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 20 C -0.46 -12.38 9.04 -37.83 -0.34 -12.72 16 21 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 22 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 23 N -0.80 -20.80 10.96 55.55 0.61 -20.19 16 24 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 27 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 28 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 29 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.37 7.88 -51.93 -0.41 -0.04 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.59 8.03 -51.92 -0.42 0.17 16 36 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.23 7.88 -51.93 -0.41 -0.18 16 39 H 0.35 3.33 8.29 -39.29 -0.33 3.01 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.37 3.63 9.04 45.56 0.41 4.04 16 43 H 0.05 0.74 7.64 -51.93 -0.40 0.35 16 44 H 0.06 0.85 7.66 -51.93 -0.40 0.45 16 45 H 0.09 1.79 6.27 -52.48 -0.33 1.46 16 46 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 47 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 48 H 0.13 3.38 6.16 -52.49 -0.32 3.05 16 49 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 401.78 15.07 6.05 6.05 Total: -1.00 -29.20 401.78 -11.30 -40.50 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -7.63 Total: 10.54 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -3.80 Total: -28.85 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: -0.13 Total: -27.40 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.75 Total: -14.56 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.20 -11.30 -40.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566119975.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.590 kcal (2) G-P(sol) polarization free energy of solvation -29.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds