Wall clock time and date at job start Tue Mar 31 2020 13:54:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47079 * 2 1
4 4 H 1.09000 * 115.56449 * 29.30941 * 3 2 1
5 5 C 1.53076 * 117.49262 * 243.59984 * 3 2 1
6 6 C 1.52999 * 117.49797 * 174.99837 * 3 2 1
7 7 H 1.08999 * 117.50148 * 359.97438 * 6 3 2
8 8 C 1.53000 * 117.49935 * 214.97549 * 6 3 2
9 9 N 1.46897 * 109.47370 * 175.08620 * 8 6 3
10 10 C 1.46903 * 111.00552 * 180.02562 * 9 8 6
11 11 C 1.52998 * 109.47323 * 180.02562 * 10 9 8
12 12 H 1.08991 * 109.47129 * 59.99976 * 11 10 9
13 13 O 1.42901 * 109.46982 * 299.99553 * 11 10 9
14 14 C 1.53005 * 109.46811 * 179.97438 * 11 10 9
15 15 O 1.42896 * 109.46958 * 184.99964 * 14 11 10
16 16 C 1.35675 * 117.00196 * 180.02562 * 15 14 11
17 17 C 1.39309 * 119.81565 * 0.02562 * 16 15 14
18 18 C 1.36435 * 120.18714 * 180.02562 * 17 16 15
19 19 C 1.40830 * 119.81144 * 359.97438 * 18 17 16
20 20 C 1.41216 * 120.18165 * 179.97438 * 19 18 17
21 21 H 1.08004 * 120.00009 * 204.61174 * 20 19 18
22 22 C 1.39886 * 119.99777 * 24.60325 * 20 19 18
23 23 N 1.30882 * 120.00149 * 17.99012 * 22 20 19
24 24 Si 1.86801 * 119.99910 * 197.98681 * 22 20 19
25 25 H 1.48503 * 109.47011 * 0.02562 * 24 22 20
26 26 H 1.48495 * 109.47236 * 120.00558 * 24 22 20
27 27 H 1.48502 * 109.46852 * 240.00357 * 24 22 20
28 28 C 1.40836 * 119.63928 * 0.02562 * 19 18 17
29 29 C 1.36432 * 119.81456 * 359.97438 * 28 19 18
30 30 H 1.09009 * 109.46805 * 60.00327 * 1 2 3
31 31 H 1.09002 * 109.46855 * 179.97438 * 1 2 3
32 32 H 1.08993 * 109.47505 * 300.00230 * 1 2 3
33 33 H 1.08998 * 109.46947 * 239.99348 * 2 1 3
34 34 H 1.08999 * 109.46883 * 119.99703 * 2 1 3
35 35 H 1.09004 * 117.51455 * 145.04013 * 5 3 2
36 36 H 1.09002 * 117.51258 * 359.97438 * 5 3 2
37 37 H 1.09004 * 109.47262 * 55.08924 * 8 6 3
38 38 H 1.08998 * 109.47141 * 295.08987 * 8 6 3
39 39 H 1.00907 * 111.00130 * 56.04797 * 9 8 6
40 40 H 1.09001 * 109.47095 * 59.99510 * 10 9 8
41 41 H 1.09002 * 109.46322 * 299.99929 * 10 9 8
42 42 H 0.96691 * 114.00118 * 300.00328 * 13 11 10
43 43 H 1.08999 * 109.47094 * 64.99885 * 14 11 10
44 44 H 1.09000 * 109.47106 * 305.00264 * 14 11 10
45 45 H 1.08004 * 119.91007 * 0.02562 * 17 16 15
46 46 H 1.08000 * 120.09697 * 180.27201 * 18 17 16
47 47 H 0.96995 * 119.99786 * 179.97438 * 23 22 20
48 48 H 1.08004 * 120.09425 * 179.97438 * 28 19 18
49 49 H 1.08003 * 119.91006 * 180.02562 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.3884 2.1717 0.4813
5 6 2.8448 1.9074 -1.2163
6 6 3.5501 1.6578 0.1183
7 1 4.1803 0.7719 0.1966
8 6 4.0300 2.8804 0.9032
9 7 5.4952 2.8522 1.0058
10 6 5.9929 4.0134 1.7554
11 6 7.5192 3.9495 1.8404
12 1 7.9398 3.9587 0.8350
13 8 7.9091 2.7483 2.5090
14 6 8.0375 5.1593 2.6207
15 8 9.4664 5.1624 2.6007
16 6 10.0894 6.1763 3.2524
17 6 9.3338 7.1510 3.9002
18 6 9.9524 8.1742 4.5574
19 6 11.3589 8.2429 4.5800
20 6 12.0073 9.2989 5.2574
21 1 13.0054 9.5934 4.9686
22 6 11.3566 9.9634 6.3023
23 7 10.3249 9.4104 6.8877
24 14 11.9604 11.6402 6.8622
25 1 13.1332 12.0422 6.0448
26 1 10.8745 12.6389 6.6938
27 1 12.3532 11.5724 8.2927
28 6 12.1152 7.2534 3.9225
29 6 11.4811 6.2369 3.2699
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.7227 2.9426 -1.5351
36 1 3.0111 1.1856 -2.0159
37 1 3.5955 2.8640 1.9027
38 1 3.7193 3.7886 0.3868
39 1 5.9208 2.8017 0.0923
40 1 5.5719 4.0045 2.7608
41 1 5.6958 4.9297 1.2451
42 1 7.5696 2.6723 3.4112
43 1 7.6886 5.1033 3.6518
44 1 7.6657 6.0749 2.1606
45 1 8.2553 7.0966 3.8823
46 1 9.3653 8.9267 5.0629
47 1 9.8740 9.8711 7.6124
48 1 13.1942 7.2992 3.9348
49 1 12.0596 5.4770 2.7655
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000566119976.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:54:17
Heat of formation + Delta-G solvation = -61.453054 kcal
Electronic energy + Delta-G solvation = -25178.803908 eV
Core-core repulsion = 21491.907905 eV
Total energy + Delta-G solvation = -3686.896003 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-39.15667 -38.74068 -37.61299 -36.14819 -35.04620 -33.33964 -32.47805 -30.51353
-29.62900 -29.02113 -26.90087 -24.85845 -24.20265 -23.73765 -22.04631 -21.11251
-20.89510 -20.57696 -20.32225 -17.37022 -17.15074 -16.77450 -16.26804 -15.89154
-15.25500 -15.18344 -15.10344 -14.75394 -14.46085 -13.99833 -13.93276 -13.88228
-13.51719 -13.17760 -12.80053 -12.67911 -12.46315 -12.40928 -12.15159 -11.98981
-11.74319 -11.70576 -11.60134 -11.44423 -11.35453 -11.13905 -10.99435 -10.79682
-10.59417 -10.28066 -10.15756 -9.93629 -9.86111 -9.75025 -9.37005 -9.01696
-8.67134 -7.66007 -7.01553 -6.73671 -4.25649 2.75309 2.96035 3.07879
3.13244 3.20088 3.30749 3.56823 3.94572 4.11210 4.34028 4.46627
4.53057 4.60976 4.65196 4.78136 4.87592 4.95361 4.98217 5.01900
5.07806 5.22641 5.26884 5.33254 5.35655 5.44139 5.48197 5.52245
5.59869 5.64679 5.67667 5.68318 5.73918 5.88394 6.01442 6.04974
6.09852 6.28514 6.67706 6.73946 6.88939 7.06382 7.09426 7.27661
7.40754 7.55671 7.79423 7.90247 8.00019 8.15176 8.44458 8.64904
8.89788 8.98920 10.21162
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.027693 B = 0.001681 C = 0.001618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1010.860506 B =16656.219278 C =17306.373575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.094 4.094
3 C -0.146 4.146
4 H 0.103 0.897
5 C -0.180 4.180
6 C -0.146 4.146
7 H 0.114 0.886
8 C 0.089 3.911
9 N -0.676 5.676
10 C 0.030 3.970
11 C 0.116 3.884
12 H 0.102 0.898
13 O -0.540 6.540
14 C 0.039 3.961
15 O -0.318 6.318
16 C -0.010 4.010
17 C -0.175 4.175
18 C -0.135 4.135
19 C 0.086 3.914
20 C -0.463 4.463
21 H 0.077 0.923
22 C 0.075 3.925
23 N -0.801 5.801
24 Si 0.906 3.094
25 H -0.261 1.261
26 H -0.273 1.273
27 H -0.275 1.275
28 C -0.195 4.195
29 C -0.112 4.112
30 H 0.054 0.946
31 H 0.054 0.946
32 H 0.054 0.946
33 H 0.062 0.938
34 H 0.066 0.934
35 H 0.091 0.909
36 H 0.093 0.907
37 H 0.075 0.925
38 H 0.029 0.971
39 H 0.344 0.656
40 H 0.078 0.922
41 H 0.041 0.959
42 H 0.372 0.628
43 H 0.054 0.946
44 H 0.056 0.944
45 H 0.093 0.907
46 H 0.121 0.879
47 H 0.278 0.722
48 H 0.100 0.900
49 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.307 -12.131 -10.874 23.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.132 4.132
3 C -0.165 4.165
4 H 0.121 0.879
5 C -0.217 4.217
6 C -0.165 4.165
7 H 0.132 0.868
8 C -0.040 4.040
9 N -0.307 5.307
10 C -0.100 4.100
11 C 0.055 3.945
12 H 0.120 0.880
13 O -0.344 6.344
14 C -0.039 4.039
15 O -0.234 6.234
16 C -0.053 4.053
17 C -0.194 4.194
18 C -0.154 4.154
19 C 0.084 3.916
20 C -0.493 4.493
21 H 0.096 0.904
22 C -0.142 4.142
23 N -0.427 5.427
24 Si 0.731 3.269
25 H -0.184 1.184
26 H -0.198 1.198
27 H -0.201 1.201
28 C -0.215 4.215
29 C -0.131 4.131
30 H 0.073 0.927
31 H 0.073 0.927
32 H 0.073 0.927
33 H 0.081 0.919
34 H 0.085 0.915
35 H 0.109 0.891
36 H 0.112 0.888
37 H 0.093 0.907
38 H 0.048 0.952
39 H 0.162 0.838
40 H 0.097 0.903
41 H 0.059 0.941
42 H 0.218 0.782
43 H 0.072 0.928
44 H 0.074 0.926
45 H 0.111 0.889
46 H 0.139 0.861
47 H 0.089 0.911
48 H 0.118 0.882
49 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -17.070 -12.763 -10.793 23.891
hybrid contribution -0.504 1.914 0.386 2.016
sum -17.574 -10.849 -10.407 23.127
Atomic orbital electron populations
1.21750 0.95510 1.01583 1.01866 1.21118 0.95896 0.94067 1.02083
1.22466 0.93441 0.98154 1.02421 0.87927 1.23261 1.04597 1.02170
0.91669 1.22429 0.94670 1.00497 0.98864 0.86808 1.21525 0.88083
0.94714 0.99651 1.60286 1.05175 1.42257 1.23013 1.22570 0.95720
0.91927 0.99794 1.21825 0.91377 0.83973 0.97276 0.88006 1.86613
1.76956 1.39606 1.31255 1.23110 0.82720 0.98118 0.99931 1.85862
1.17586 1.47331 1.72587 1.18607 0.91791 0.91555 1.03372 1.20594
0.97320 0.97908 1.03543 1.20938 0.95079 0.98538 1.00861 1.17606
0.91735 0.91432 0.90807 1.19502 1.02023 1.13883 1.13873 0.90442
1.25874 0.94190 0.98773 0.95328 1.69848 1.18155 1.36435 1.18269
0.86297 0.79845 0.81964 0.78814 1.18417 1.19829 1.20065 1.20608
0.97956 0.96476 1.06469 1.19621 0.90689 0.99703 1.03057 0.92711
0.92718 0.92672 0.91898 0.91496 0.89073 0.88816 0.90694 0.95247
0.83787 0.90311 0.94091 0.78152 0.92770 0.92580 0.88944 0.86142
0.91075 0.88182 0.88457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.80 9.87 37.16 0.37 -0.44 16
2 C -0.09 -0.58 6.22 -26.73 -0.17 -0.74 16
3 C -0.15 -0.99 5.46 -90.58 -0.49 -1.48 16
4 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16
5 C -0.18 -1.21 9.83 -26.69 -0.26 -1.48 16
6 C -0.15 -1.11 5.67 -90.62 -0.51 -1.62 16
7 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16
8 C 0.09 0.74 5.97 -3.83 -0.02 0.71 16
9 N -0.68 -6.45 6.37 -113.78 -0.72 -7.17 16
10 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16
11 C 0.12 1.47 3.45 -26.73 -0.09 1.38 16
12 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
13 O -0.54 -7.64 13.17 -40.06 -0.53 -8.17 16
14 C 0.04 0.60 4.37 37.16 0.16 0.76 16
15 O -0.32 -6.57 10.09 -23.55 -0.24 -6.80 16
16 C -0.01 -0.23 6.71 -38.78 -0.26 -0.50 16
17 C -0.17 -4.11 8.96 -39.83 -0.36 -4.47 16
18 C -0.13 -3.50 8.65 -39.25 -0.34 -3.84 16
19 C 0.09 2.32 5.57 -106.80 -0.60 1.73 16
20 C -0.46 -12.32 9.04 -37.83 -0.34 -12.67 16
21 H 0.08 1.98 7.91 -52.48 -0.42 1.57 16
22 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16
23 N -0.80 -20.75 10.96 55.54 0.61 -20.14 16
24 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16
25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16
26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16
27 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16
28 C -0.20 -4.87 9.74 -39.25 -0.38 -5.25 16
29 C -0.11 -2.65 9.92 -39.83 -0.40 -3.05 16
30 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16
31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16
33 H 0.06 0.37 7.88 -51.93 -0.41 -0.03 16
34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16
36 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16
37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.03 0.24 7.88 -51.93 -0.41 -0.17 16
39 H 0.34 3.16 8.73 -39.29 -0.34 2.82 16
40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16
41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16
42 H 0.37 4.19 9.05 45.56 0.41 4.60 16
43 H 0.05 0.83 7.64 -51.93 -0.40 0.43 16
44 H 0.06 0.84 7.65 -51.93 -0.40 0.44 16
45 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16
46 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16
47 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16
48 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16
49 H 0.10 2.10 8.06 -52.48 -0.42 1.67 16
LS Contribution 402.39 15.07 6.06 6.06
Total: -1.00 -29.33 402.39 -11.30 -40.63
By element:
Atomic # 1 Polarization: 18.46 SS G_CDS: -7.65 Total: 10.81 kcal
Atomic # 6 Polarization: -25.07 SS G_CDS: -3.80 Total: -28.87 kcal
Atomic # 7 Polarization: -27.20 SS G_CDS: -0.12 Total: -27.31 kcal
Atomic # 8 Polarization: -14.21 SS G_CDS: -0.77 Total: -14.97 kcal
Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -29.33 -11.30 -40.63 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000566119976.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.823 kcal
(2) G-P(sol) polarization free energy of solvation -29.330 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.453 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds