Wall clock time and date at job start Tue Mar 31 2020 13:54:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47079 * 2 1
4 4 H 1.09000 * 115.56449 * 29.30941 * 3 2 1
5 5 C 1.53076 * 117.49262 * 243.59984 * 3 2 1
6 6 C 1.52999 * 117.49797 * 174.99837 * 3 2 1
7 7 H 1.08999 * 117.50148 * 359.97438 * 6 3 2
8 8 C 1.53000 * 117.49935 * 214.97549 * 6 3 2
9 9 N 1.46897 * 109.47370 * 175.08620 * 8 6 3
10 10 C 1.46903 * 111.00552 * 180.02562 * 9 8 6
11 11 C 1.52998 * 109.47323 * 180.02562 * 10 9 8
12 12 H 1.08991 * 109.47129 * 59.99976 * 11 10 9
13 13 O 1.42901 * 109.46982 * 299.99553 * 11 10 9
14 14 C 1.53005 * 109.46811 * 179.97438 * 11 10 9
15 15 O 1.42896 * 109.46958 * 184.99964 * 14 11 10
16 16 C 1.35675 * 117.00196 * 180.02562 * 15 14 11
17 17 C 1.39309 * 119.81565 * 0.02562 * 16 15 14
18 18 C 1.36435 * 120.18714 * 180.02562 * 17 16 15
19 19 C 1.40830 * 119.81144 * 359.97438 * 18 17 16
20 20 C 1.41216 * 120.18165 * 179.97438 * 19 18 17
21 21 H 1.08004 * 120.00009 * 204.61174 * 20 19 18
22 22 C 1.39886 * 119.99777 * 24.60325 * 20 19 18
23 23 N 1.30882 * 120.00149 * 17.99012 * 22 20 19
24 24 Si 1.86801 * 119.99910 * 197.98681 * 22 20 19
25 25 H 1.48503 * 109.47011 * 0.02562 * 24 22 20
26 26 H 1.48495 * 109.47236 * 120.00558 * 24 22 20
27 27 H 1.48502 * 109.46852 * 240.00357 * 24 22 20
28 28 C 1.40836 * 119.63928 * 0.02562 * 19 18 17
29 29 C 1.36432 * 119.81456 * 359.97438 * 28 19 18
30 30 H 1.09009 * 109.46805 * 60.00327 * 1 2 3
31 31 H 1.09002 * 109.46855 * 179.97438 * 1 2 3
32 32 H 1.08993 * 109.47505 * 300.00230 * 1 2 3
33 33 H 1.08998 * 109.46947 * 239.99348 * 2 1 3
34 34 H 1.08999 * 109.46883 * 119.99703 * 2 1 3
35 35 H 1.09004 * 117.51455 * 145.04013 * 5 3 2
36 36 H 1.09002 * 117.51258 * 359.97438 * 5 3 2
37 37 H 1.09004 * 109.47262 * 55.08924 * 8 6 3
38 38 H 1.08998 * 109.47141 * 295.08987 * 8 6 3
39 39 H 1.00907 * 111.00130 * 56.04797 * 9 8 6
40 40 H 1.09001 * 109.47095 * 59.99510 * 10 9 8
41 41 H 1.09002 * 109.46322 * 299.99929 * 10 9 8
42 42 H 0.96691 * 114.00118 * 300.00328 * 13 11 10
43 43 H 1.08999 * 109.47094 * 64.99885 * 14 11 10
44 44 H 1.09000 * 109.47106 * 305.00264 * 14 11 10
45 45 H 1.08004 * 119.91007 * 0.02562 * 17 16 15
46 46 H 1.08000 * 120.09697 * 180.27201 * 18 17 16
47 47 H 0.96995 * 119.99786 * 179.97438 * 23 22 20
48 48 H 1.08004 * 120.09425 * 179.97438 * 28 19 18
49 49 H 1.08003 * 119.91006 * 180.02562 * 29 28 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.3884 2.1717 0.4813
5 6 2.8448 1.9074 -1.2163
6 6 3.5501 1.6578 0.1183
7 1 4.1803 0.7719 0.1966
8 6 4.0300 2.8804 0.9032
9 7 5.4952 2.8522 1.0058
10 6 5.9929 4.0134 1.7554
11 6 7.5192 3.9495 1.8404
12 1 7.9398 3.9587 0.8350
13 8 7.9091 2.7483 2.5090
14 6 8.0375 5.1593 2.6207
15 8 9.4664 5.1624 2.6007
16 6 10.0894 6.1763 3.2524
17 6 9.3338 7.1510 3.9002
18 6 9.9524 8.1742 4.5574
19 6 11.3589 8.2429 4.5800
20 6 12.0073 9.2989 5.2574
21 1 13.0054 9.5934 4.9686
22 6 11.3566 9.9634 6.3023
23 7 10.3249 9.4104 6.8877
24 14 11.9604 11.6402 6.8622
25 1 13.1332 12.0422 6.0448
26 1 10.8745 12.6389 6.6938
27 1 12.3532 11.5724 8.2927
28 6 12.1152 7.2534 3.9225
29 6 11.4811 6.2369 3.2699
30 1 -0.3633 0.5138 -0.8901
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3634 0.5138 0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.7227 2.9426 -1.5351
36 1 3.0111 1.1856 -2.0159
37 1 3.5955 2.8640 1.9027
38 1 3.7193 3.7886 0.3868
39 1 5.9208 2.8017 0.0923
40 1 5.5719 4.0045 2.7608
41 1 5.6958 4.9297 1.2451
42 1 7.5696 2.6723 3.4112
43 1 7.6886 5.1033 3.6518
44 1 7.6657 6.0749 2.1606
45 1 8.2553 7.0966 3.8823
46 1 9.3653 8.9267 5.0629
47 1 9.8740 9.8711 7.6124
48 1 13.1942 7.2992 3.9348
49 1 12.0596 5.4770 2.7655
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000566119976.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:54:14
Heat of formation + Delta-G solvation = -78.753549 kcal
Electronic energy + Delta-G solvation = -25179.554114 eV
Core-core repulsion = 21491.907905 eV
Total energy + Delta-G solvation = -3687.646209 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 2.36 seconds
Orbital eigenvalues (eV)
-40.66036 -39.50624 -38.83083 -37.70843 -35.88472 -35.20502 -33.02884 -31.76970
-31.48885 -30.68558 -27.91012 -26.58162 -24.91822 -24.56217 -23.30501 -22.61104
-22.09207 -21.53274 -21.18240 -19.27759 -18.67018 -17.90892 -17.49509 -16.94038
-16.75490 -16.05960 -15.87007 -15.81672 -15.69550 -15.33677 -15.21261 -14.80569
-14.72253 -14.23895 -14.08486 -13.98181 -13.80562 -13.50138 -13.29641 -13.21146
-12.93070 -12.84381 -12.77085 -12.70654 -12.31681 -12.24973 -12.11245 -11.92567
-11.85473 -11.67680 -11.59161 -11.23715 -11.02119 -10.85746 -10.80549 -10.59330
-9.57682 -9.39634 -8.91700 -8.60917 -6.23136 0.92619 1.03659 1.39695
1.50203 1.54931 2.22714 2.35439 2.71548 2.81569 3.19190 3.52360
3.69669 3.76249 3.87790 3.93415 4.00035 4.03459 4.11934 4.28464
4.29999 4.32401 4.37579 4.40551 4.47221 4.49092 4.55969 4.62614
4.75392 4.82712 4.85875 4.88061 4.98203 4.99258 5.04548 5.14783
5.16489 5.22231 5.26532 5.33598 5.36561 5.50915 5.51671 5.65621
5.96432 5.98785 6.05873 6.23194 6.37457 6.55688 6.78320 6.86813
6.94756 7.09713 8.36228
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.027693 B = 0.001681 C = 0.001618
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1010.860506 B =16656.219278 C =17306.373575
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.095 4.095
3 C -0.143 4.143
4 H 0.105 0.895
5 C -0.176 4.176
6 C -0.153 4.153
7 H 0.104 0.896
8 C 0.093 3.907
9 N -0.684 5.684
10 C 0.040 3.960
11 C 0.126 3.874
12 H 0.098 0.902
13 O -0.559 6.559
14 C 0.030 3.970
15 O -0.328 6.328
16 C -0.002 4.002
17 C -0.175 4.175
18 C -0.155 4.155
19 C 0.053 3.947
20 C -0.499 4.499
21 H 0.075 0.925
22 C 0.035 3.965
23 N -0.832 5.832
24 Si 0.981 3.019
25 H -0.259 1.259
26 H -0.265 1.265
27 H -0.267 1.267
28 C -0.205 4.205
29 C -0.122 4.122
30 H 0.055 0.945
31 H 0.059 0.941
32 H 0.055 0.945
33 H 0.063 0.937
34 H 0.063 0.937
35 H 0.094 0.906
36 H 0.097 0.903
37 H 0.072 0.928
38 H 0.034 0.966
39 H 0.346 0.654
40 H 0.085 0.915
41 H 0.051 0.949
42 H 0.383 0.617
43 H 0.060 0.940
44 H 0.067 0.933
45 H 0.119 0.881
46 H 0.107 0.893
47 H 0.287 0.713
48 H 0.109 0.891
49 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.512 -12.170 -11.334 24.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.132 4.132
3 C -0.162 4.162
4 H 0.123 0.877
5 C -0.213 4.213
6 C -0.171 4.171
7 H 0.122 0.878
8 C -0.035 4.035
9 N -0.315 5.315
10 C -0.090 4.090
11 C 0.066 3.934
12 H 0.116 0.884
13 O -0.365 6.365
14 C -0.046 4.046
15 O -0.244 6.244
16 C -0.046 4.046
17 C -0.194 4.194
18 C -0.174 4.174
19 C 0.051 3.949
20 C -0.529 4.529
21 H 0.093 0.907
22 C -0.179 4.179
23 N -0.459 5.459
24 Si 0.802 3.198
25 H -0.182 1.182
26 H -0.189 1.189
27 H -0.192 1.192
28 C -0.225 4.225
29 C -0.141 4.141
30 H 0.074 0.926
31 H 0.078 0.922
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.081 0.919
35 H 0.113 0.887
36 H 0.116 0.884
37 H 0.091 0.909
38 H 0.053 0.947
39 H 0.164 0.836
40 H 0.103 0.897
41 H 0.070 0.930
42 H 0.231 0.769
43 H 0.078 0.922
44 H 0.085 0.915
45 H 0.137 0.863
46 H 0.125 0.875
47 H 0.098 0.902
48 H 0.127 0.873
49 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -18.294 -12.827 -11.261 25.020
hybrid contribution -0.205 1.764 0.458 1.834
sum -18.499 -11.063 -10.803 24.110
Atomic orbital electron populations
1.21739 0.94886 1.02001 1.01942 1.21126 0.96441 0.93663 1.01973
1.22519 0.92842 0.98564 1.02276 0.87717 1.23298 1.03964 1.02513
0.91484 1.22336 0.95129 0.99940 0.99702 0.87818 1.21496 0.87160
0.95178 0.99696 1.60271 1.06009 1.42063 1.23199 1.22422 0.93444
0.92620 1.00471 1.21767 0.93068 0.82268 0.96323 0.88371 1.86581
1.77541 1.40061 1.32289 1.23474 0.79977 1.00122 1.01027 1.85860
1.20502 1.46158 1.71889 1.18729 0.91979 0.91608 1.02281 1.20806
0.98779 0.97115 1.02704 1.20916 0.94952 0.99433 1.02131 1.17971
0.92546 0.92430 0.91923 1.19741 1.02557 1.15326 1.15271 0.90658
1.26714 0.94173 1.02215 0.94816 1.69890 1.19168 1.38006 1.18804
0.85170 0.79369 0.76782 0.78441 1.18220 1.18919 1.19176 1.20799
0.98567 0.96567 1.06526 1.19896 0.91458 0.99802 1.02932 0.92581
0.92172 0.92633 0.91787 0.91855 0.88714 0.88416 0.90928 0.94745
0.83602 0.89691 0.93043 0.76858 0.92209 0.91527 0.86328 0.87470
0.90239 0.87278 0.86474
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.40 9.87 71.98 0.71 -0.69 16
2 C -0.09 -1.05 6.22 30.59 0.19 -0.86 16
3 C -0.14 -1.74 5.46 -10.77 -0.06 -1.80 16
4 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16
5 C -0.18 -2.10 9.83 30.62 0.30 -1.80 16
6 C -0.15 -2.13 5.67 -10.79 -0.06 -2.19 16
7 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16
8 C 0.09 1.39 5.97 86.30 0.51 1.90 16
9 N -0.68 -11.89 6.37 -513.88 -3.27 -15.16 16
10 C 0.04 0.71 5.35 86.30 0.46 1.18 16
11 C 0.13 2.97 3.45 30.60 0.11 3.08 16
12 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16
13 O -0.56 -14.96 13.17 -144.37 -1.90 -16.86 16
14 C 0.03 0.89 4.37 71.98 0.31 1.21 16
15 O -0.33 -13.09 10.09 -85.31 -0.86 -13.95 16
16 C 0.00 -0.10 6.71 22.79 0.15 0.06 16
17 C -0.18 -8.17 8.96 22.11 0.20 -7.97 16
18 C -0.15 -8.19 8.65 22.48 0.19 -7.99 16
19 C 0.05 2.93 5.57 -21.28 -0.12 2.81 16
20 C -0.50 -27.20 9.04 23.40 0.21 -26.99 16
21 H 0.08 3.96 7.91 -2.91 -0.02 3.94 16
22 C 0.03 1.75 5.13 85.23 0.44 2.19 16
23 N -0.83 -43.64 10.96 21.82 0.24 -43.40 16
24 Si 0.98 38.33 29.60 68.60 2.03 40.36 16
25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16
26 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16
27 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16
28 C -0.21 -10.35 9.74 22.48 0.22 -10.13 16
29 C -0.12 -5.74 9.92 22.11 0.22 -5.52 16
30 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16
31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16
33 H 0.06 0.69 7.88 -2.39 -0.02 0.67 16
34 H 0.06 0.74 8.14 -2.39 -0.02 0.73 16
35 H 0.09 1.07 8.03 -2.38 -0.02 1.06 16
36 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16
37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16
38 H 0.03 0.48 7.88 -2.39 -0.02 0.46 16
39 H 0.35 5.82 8.73 -89.69 -0.78 5.03 16
40 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
41 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
42 H 0.38 8.06 9.05 -74.06 -0.67 7.39 16
43 H 0.06 1.71 7.64 -2.39 -0.02 1.69 16
44 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16
45 H 0.12 4.75 6.27 -2.91 -0.02 4.74 16
46 H 0.11 5.87 6.15 -2.91 -0.02 5.85 16
47 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16
48 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16
49 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16
Total: -1.00 -62.64 402.39 -0.29 -62.93
By element:
Atomic # 1 Polarization: 40.10 SS G_CDS: -0.51 Total: 39.59 kcal
Atomic # 6 Polarization: -57.50 SS G_CDS: 3.99 Total: -53.51 kcal
Atomic # 7 Polarization: -55.53 SS G_CDS: -3.03 Total: -58.56 kcal
Atomic # 8 Polarization: -28.04 SS G_CDS: -2.76 Total: -30.80 kcal
Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal
Total: -62.64 -0.29 -62.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000566119976.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.826 kcal
(2) G-P(sol) polarization free energy of solvation -62.641 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.467 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.37 seconds