Wall clock time and date at job start Tue Mar 31 2020 13:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 C 1.52993 * 109.47346 * 120.00154 * 2 1 3 5 5 O 1.42907 * 109.47164 * 175.00009 * 4 2 1 6 6 C 1.35904 * 116.99903 * 179.97438 * 5 4 2 7 7 C 1.38808 * 120.02003 * 359.72190 * 6 5 4 8 8 C 1.38170 * 120.08299 * 179.74507 * 7 6 5 9 9 C 1.38169 * 120.12192 * 0.55243 * 8 7 6 10 10 C 1.38889 * 120.04254 * 359.70578 * 9 8 7 11 11 N 1.39912 * 120.04357 * 180.02562 * 10 9 8 12 12 C 1.34778 * 119.99986 * 213.29218 * 11 10 9 13 13 O 1.21287 * 119.99804 * 5.27727 * 12 11 10 14 14 C 1.50698 * 119.99816 * 185.27266 * 12 11 10 15 15 C 1.53005 * 109.46686 * 180.02562 * 14 12 11 16 16 C 1.53005 * 109.46946 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.47198 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46938 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00385 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99834 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99669 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46764 * 60.00921 * 22 20 18 24 24 H 1.48502 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47425 * 300.00343 * 22 20 18 26 26 C 1.38586 * 120.01843 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.46483 * 299.99522 * 1 2 3 28 28 H 1.08995 * 109.47052 * 59.99388 * 1 2 3 29 29 H 1.09004 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47201 * 240.00388 * 2 1 3 31 31 H 1.09005 * 109.47237 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47787 * 300.00162 * 3 2 1 33 33 H 1.08996 * 109.47321 * 60.00490 * 3 2 1 34 34 H 1.08998 * 109.47314 * 294.99990 * 4 2 1 35 35 H 1.09004 * 109.47113 * 55.00053 * 4 2 1 36 36 H 1.08005 * 119.95637 * 0.02616 * 7 6 5 37 37 H 1.07993 * 119.93641 * 180.25916 * 8 7 6 38 38 H 1.08002 * 119.97839 * 179.72305 * 9 8 7 39 39 H 0.96998 * 120.00082 * 33.28829 * 11 10 9 40 40 H 1.08998 * 109.47395 * 300.00012 * 14 12 11 41 41 H 1.08998 * 109.47404 * 60.00493 * 14 12 11 42 42 H 1.08997 * 109.47518 * 299.99755 * 15 14 12 43 43 H 1.08998 * 109.47371 * 60.00356 * 15 14 12 44 44 H 1.08998 * 109.47243 * 299.99897 * 16 15 14 45 45 H 1.09008 * 109.46908 * 59.99819 * 16 15 14 46 46 H 1.08998 * 109.47122 * 300.00194 * 17 16 15 47 47 H 1.08998 * 109.46636 * 60.00037 * 17 16 15 48 48 H 0.97008 * 120.00119 * 179.97438 * 21 20 18 49 49 H 1.07995 * 120.05974 * 359.95607 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2491 5 8 3.4643 -0.8238 1.1919 6 6 4.0807 -1.4423 2.2332 7 6 3.3296 -1.9352 3.2914 8 6 3.9545 -2.5690 4.3482 9 6 5.3295 -2.7040 4.3608 10 6 6.0866 -2.2080 3.3073 11 7 7.4789 -2.3453 3.3197 12 6 8.2550 -1.3913 2.7683 13 8 7.7538 -0.3701 2.3474 14 6 9.7455 -1.5933 2.6750 15 6 10.3854 -0.3707 2.0141 16 6 11.8986 -0.5760 1.9187 17 6 12.5385 0.6463 1.2573 18 6 14.0289 0.4442 1.1640 19 1 14.4752 -0.4652 1.5385 20 6 14.8229 1.4200 0.5995 21 7 14.2794 2.5271 0.1430 22 14 16.6705 1.1698 0.4844 23 1 16.9565 -0.0398 -0.3281 24 1 17.2915 2.3562 -0.1577 25 1 17.2322 0.9946 1.8478 26 6 5.4601 -1.5758 2.2423 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.7518 -0.1584 2.1369 35 1 1.6055 -1.7198 1.2950 36 1 2.2550 -1.8272 3.2864 37 1 3.3675 -2.9553 5.1683 38 1 5.8159 -3.1959 5.1902 39 1 7.8856 -3.1270 3.7251 40 1 10.1580 -1.7226 3.6755 41 1 9.9552 -2.4808 2.0780 42 1 9.9730 -0.2409 1.0136 43 1 10.1758 0.5166 2.6115 44 1 12.3114 -0.7061 2.9191 45 1 12.1079 -1.4634 1.3212 46 1 12.1256 0.7759 0.2569 47 1 12.3292 1.5337 1.8546 48 1 14.8380 3.2138 -0.2539 49 1 6.0464 -1.1891 1.4218 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588151894.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:58 Heat of formation + Delta-G solvation = -85.164566 kcal Electronic energy + Delta-G solvation = -25430.570029 eV Core-core repulsion = 21742.645818 eV Total energy + Delta-G solvation = -3687.924211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82829 -39.78485 -37.86609 -35.70974 -34.96034 -34.49817 -32.64339 -30.78647 -30.11791 -29.02583 -27.52378 -26.89859 -25.69633 -23.49500 -22.61860 -21.82764 -20.65187 -20.12856 -19.98971 -18.72474 -17.09606 -16.59855 -16.36114 -16.20440 -16.04406 -15.91126 -15.58534 -14.75847 -14.47636 -14.33143 -14.15117 -13.85661 -13.64530 -13.45163 -13.13489 -12.83913 -12.61988 -12.52428 -12.25440 -12.04968 -11.74666 -11.69946 -11.60714 -11.60459 -11.45754 -11.02315 -10.97050 -10.95291 -10.54014 -10.53166 -10.41623 -10.39282 -9.85486 -9.60667 -9.22669 -8.98931 -8.56221 -8.29145 -8.24133 -5.93920 -3.96589 1.05882 1.25115 2.58287 2.74178 3.11391 3.36216 3.40595 3.42768 3.61606 4.34560 4.41245 4.49793 4.62342 4.64911 4.72969 4.82441 4.93077 4.98553 5.00604 5.10444 5.21777 5.24431 5.29066 5.31606 5.35736 5.41276 5.46694 5.53623 5.62176 5.67931 5.82035 5.87482 6.00665 6.03500 6.06357 6.11831 6.18909 6.24521 6.28357 6.52594 6.68624 6.82921 7.00904 7.19258 7.24046 7.27079 7.74885 7.90945 8.06925 8.08727 8.48812 9.10881 9.66901 11.17327 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015915 B = 0.001941 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.970931 B =14421.058670 C =16002.502163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.149 4.149 4 C 0.064 3.936 5 O -0.309 6.309 6 C 0.151 3.849 7 C -0.231 4.231 8 C -0.061 4.061 9 C -0.188 4.188 10 C 0.192 3.808 11 N -0.681 5.681 12 C 0.510 3.490 13 O -0.509 6.509 14 C -0.137 4.137 15 C -0.105 4.105 16 C -0.110 4.110 17 C 0.020 3.980 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.158 4.158 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.412 0.588 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.261 0.739 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.999 -12.501 6.767 32.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.206 4.206 4 C -0.011 4.011 5 O -0.223 6.223 6 C 0.105 3.895 7 C -0.250 4.250 8 C -0.080 4.080 9 C -0.209 4.209 10 C 0.097 3.903 11 N -0.327 5.327 12 C 0.299 3.701 13 O -0.382 6.382 14 C -0.177 4.177 15 C -0.143 4.143 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.249 0.751 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -29.147 -11.472 6.160 31.923 hybrid contribution 1.041 -0.556 0.352 1.231 sum -28.106 -12.028 6.512 31.257 Atomic orbital electron populations 1.21783 0.93828 1.02100 1.02562 1.21137 0.95714 0.97206 0.97387 1.21834 1.02352 0.94716 1.01728 1.22918 0.78704 1.00227 0.99288 1.86090 1.21541 1.73301 1.41347 1.18723 0.91668 0.92172 0.86956 1.21174 1.00019 1.07215 0.96598 1.20664 0.93763 0.96388 0.97182 1.20789 0.94198 1.07623 0.98263 1.17413 0.82985 0.96956 0.92925 1.43778 1.04048 1.24799 1.60080 1.21386 0.90207 0.82306 0.76192 1.90748 1.75450 1.26809 1.45155 1.21829 0.89146 1.02843 1.03871 1.21482 0.96732 0.95242 1.00807 1.21652 0.91840 1.00986 1.00307 1.19093 0.94775 0.92123 0.95747 1.21244 0.92577 1.02992 1.39161 0.92797 1.25045 0.98618 0.95306 0.95613 1.69965 1.35449 1.07437 1.40571 0.86666 0.85660 0.77469 0.78221 1.20292 1.21325 1.20297 1.20329 0.91648 1.05708 1.00179 0.92345 0.91646 0.92412 0.89990 0.91533 0.92417 0.92724 0.91981 0.92082 0.85652 0.85515 0.85593 0.75138 0.88763 0.88635 0.91662 0.91667 0.93416 0.93411 0.96565 0.96575 0.92984 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.10 -0.70 3.16 -90.62 -0.29 -0.98 16 3 C -0.15 -1.20 9.09 37.16 0.34 -0.87 16 4 C 0.06 0.52 4.12 37.15 0.15 0.68 16 5 O -0.31 -3.71 9.67 -19.44 -0.19 -3.89 16 6 C 0.15 1.85 6.68 -39.24 -0.26 1.59 16 7 C -0.23 -2.24 9.04 -39.40 -0.36 -2.60 16 8 C -0.06 -0.53 10.03 -39.63 -0.40 -0.93 16 9 C -0.19 -1.78 9.96 -39.37 -0.39 -2.17 16 10 C 0.19 2.28 6.28 -83.72 -0.53 1.75 16 11 N -0.68 -7.24 5.34 -9.88 -0.05 -7.29 16 12 C 0.51 7.07 7.57 -10.99 -0.08 6.99 16 13 O -0.51 -9.23 13.67 5.55 0.08 -9.15 16 14 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 15 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 16 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 18 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 22 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 26 C -0.16 -2.17 8.59 -39.25 -0.34 -2.51 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 35 H 0.06 0.41 7.67 -51.93 -0.40 0.02 16 36 H 0.13 0.93 6.29 -52.48 -0.33 0.60 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.41 2.82 8.82 -40.82 -0.36 2.46 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.14 2.29 6.41 -52.49 -0.34 1.96 16 LS Contribution 402.16 15.07 6.06 6.06 Total: -1.00 -34.78 402.16 -9.69 -44.48 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -8.53 Total: -1.07 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -2.77 Total: -19.20 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.68 Total: -34.19 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.11 Total: -13.04 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.78 -9.69 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151894.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.688 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds