Wall clock time and date at job start Tue Mar 31 2020 14:09:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 109.47480 * 2 1
4 4 H 1.09009 * 109.46852 * 305.00128 * 3 2 1
5 5 N 1.46501 * 109.46983 * 64.99625 * 3 2 1
6 6 C 1.34773 * 120.00377 * 274.99917 * 5 3 2
7 7 O 1.21285 * 120.00094 * 0.02562 * 6 5 3
8 8 C 1.50699 * 120.00253 * 179.97438 * 6 5 3
9 9 C 1.53001 * 109.47346 * 180.02562 * 8 6 5
10 10 C 1.53001 * 109.46965 * 180.02562 * 9 8 6
11 11 C 1.53001 * 109.46965 * 180.02562 * 10 9 8
12 12 C 1.50695 * 109.47024 * 179.97438 * 11 10 9
13 13 H 1.07998 * 120.00246 * 0.02562 * 12 11 10
14 14 C 1.37879 * 120.00165 * 180.02562 * 12 11 10
15 15 N 1.31525 * 119.99607 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 120.00358 * 180.02562 * 14 12 11
17 17 H 1.48496 * 109.47111 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.46974 * 120.00258 * 16 14 12
19 19 H 1.48507 * 109.47221 * 240.00047 * 16 14 12
20 20 C 1.50700 * 109.47539 * 185.00298 * 3 2 1
21 21 C 1.38266 * 119.94622 * 99.99913 * 20 3 2
22 22 C 1.38145 * 120.05239 * 180.02562 * 21 20 3
23 23 C 1.38725 * 119.94620 * 359.97438 * 22 21 20
24 24 O 1.35898 * 120.05592 * 179.97438 * 23 22 21
25 25 C 1.42902 * 117.00254 * 179.97438 * 24 23 22
26 26 C 1.38731 * 119.88981 * 359.97438 * 23 22 21
27 27 C 1.38143 * 119.94414 * 0.02562 * 26 23 22
28 28 H 1.09002 * 109.46628 * 300.00234 * 1 2 3
29 29 H 1.09000 * 109.46819 * 59.99834 * 1 2 3
30 30 H 1.08996 * 109.46776 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47234 * 240.00206 * 2 1 3
32 32 H 1.09002 * 109.47327 * 120.00193 * 2 1 3
33 33 H 0.97003 * 119.99381 * 95.00665 * 5 3 2
34 34 H 1.08993 * 109.47401 * 300.01283 * 8 6 5
35 35 H 1.09012 * 109.46967 * 60.00369 * 8 6 5
36 36 H 1.08999 * 109.47246 * 300.00253 * 9 8 6
37 37 H 1.08997 * 109.46829 * 60.00559 * 9 8 6
38 38 H 1.08999 * 109.47160 * 300.00078 * 10 9 8
39 39 H 1.08997 * 109.47077 * 60.00483 * 10 9 8
40 40 H 1.08994 * 109.47161 * 300.00502 * 11 10 9
41 41 H 1.09005 * 109.46506 * 60.00291 * 11 10 9
42 42 H 0.97002 * 119.99798 * 180.02562 * 15 14 12
43 43 H 1.08002 * 119.97130 * 0.27980 * 21 20 3
44 44 H 1.08000 * 120.02375 * 180.02562 * 22 21 20
45 45 H 1.09005 * 109.47182 * 59.99870 * 25 24 23
46 46 H 1.09001 * 109.47459 * 179.97438 * 25 24 23
47 47 H 1.09001 * 109.47097 * 299.99927 * 25 24 23
48 48 H 1.08001 * 120.02847 * 179.97438 * 26 23 22
49 49 H 1.08001 * 119.97044 * 179.97438 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8419
5 7 1.6525 2.0974 1.2518
6 6 0.4353 2.6644 1.3669
7 8 -0.3395 2.6320 0.4343
8 6 0.0363 3.3377 2.6548
9 6 -1.3828 3.8937 2.5214
10 6 -1.7875 4.5777 3.8288
11 6 -3.2069 5.1332 3.6956
12 6 -3.6057 5.8064 4.9835
13 1 -2.9157 5.8356 5.8138
14 6 -4.8516 6.3851 5.1018
15 7 -5.6921 6.3490 4.0908
16 14 -5.3458 7.2202 6.6980
17 1 -4.2295 7.1250 7.6727
18 1 -5.6519 8.6493 6.4347
19 1 -6.5486 6.5508 7.2552
20 6 3.5420 1.4443 -0.1239
21 6 4.1331 1.6873 -1.3500
22 6 5.5097 1.6890 -1.4662
23 6 6.2990 1.4470 -0.3513
24 8 7.6534 1.4476 -0.4632
25 6 8.4028 1.1916 0.7263
26 6 5.7035 1.2045 0.8780
27 6 4.3265 1.2039 0.9890
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8900
33 1 2.2721 2.1231 1.9977
34 1 0.0675 2.6131 3.4684
35 1 0.7278 4.1530 2.8679
36 1 -1.4142 4.6182 1.7077
37 1 -2.0740 3.0781 2.3086
38 1 -1.7560 3.8535 4.6427
39 1 -1.0963 5.3933 4.0411
40 1 -3.2388 5.8572 2.8816
41 1 -3.8978 4.3172 3.4834
42 1 -6.5685 6.7565 4.1740
43 1 3.5182 1.8801 -2.2167
44 1 5.9709 1.8793 -2.4240
45 1 8.1415 0.2075 1.1156
46 1 9.4682 1.2204 0.4979
47 1 8.1703 1.9511 1.4728
48 1 6.3159 1.0154 1.7473
49 1 3.8625 1.0147 1.9457
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000588255192.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:09:00
Heat of formation + Delta-G solvation = -80.629283 kcal
Electronic energy + Delta-G solvation = -25813.611533 eV
Core-core repulsion = 22125.883986 eV
Total energy + Delta-G solvation = -3687.727547 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.79134 -39.88649 -38.16329 -35.73116 -34.75114 -32.79741 -32.27785 -31.50132
-30.76550 -29.58302 -27.97149 -26.19691 -25.19736 -23.27263 -22.56362 -22.13852
-20.75715 -20.17752 -19.93339 -18.63664 -17.10857 -16.83250 -16.22580 -16.18291
-16.02908 -15.80540 -15.41655 -14.71420 -14.56521 -14.42324 -14.15635 -13.87279
-13.78987 -13.34857 -13.17850 -12.93908 -12.62934 -12.57921 -12.37030 -12.06564
-11.73862 -11.65271 -11.60445 -11.34446 -11.26580 -11.19426 -10.99060 -10.90928
-10.49956 -10.46443 -10.38330 -9.73706 -9.58816 -9.42632 -9.20072 -9.09529
-8.94943 -8.51084 -8.29002 -5.93696 -3.95999 0.91857 0.95843 2.77689
2.82434 3.10976 3.34085 3.38647 3.41250 3.45234 4.29003 4.31851
4.45030 4.50322 4.61734 4.67451 4.84885 4.90659 4.92867 4.98811
5.02193 5.07049 5.18277 5.33880 5.36613 5.40531 5.42323 5.49946
5.61060 5.72523 5.80518 5.89183 5.90424 5.92140 6.04079 6.14617
6.17345 6.31570 6.33749 6.38478 6.47577 6.58689 6.87303 6.93755
7.05334 7.22762 7.47847 7.76469 7.92564 8.08103 8.32271 8.50001
9.11986 9.67540 11.17613
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021080 B = 0.001904 C = 0.001800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1327.981131 B =14699.864963 C =15553.636383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.126 4.126
3 C 0.189 3.811
4 H 0.096 0.904
5 N -0.733 5.733
6 C 0.513 3.487
7 O -0.528 6.528
8 C -0.140 4.140
9 C -0.102 4.102
10 C -0.110 4.110
11 C 0.019 3.981
12 C -0.519 4.519
13 H 0.055 0.945
14 C 0.054 3.946
15 N -0.895 5.895
16 Si 0.891 3.109
17 H -0.273 1.273
18 H -0.284 1.284
19 H -0.284 1.284
20 C -0.125 4.125
21 C -0.067 4.067
22 C -0.148 4.148
23 C 0.125 3.875
24 O -0.319 6.319
25 C 0.027 3.973
26 C -0.204 4.204
27 C -0.073 4.073
28 H 0.060 0.940
29 H 0.061 0.939
30 H 0.045 0.955
31 H 0.069 0.931
32 H 0.062 0.938
33 H 0.397 0.603
34 H 0.089 0.911
35 H 0.089 0.911
36 H 0.063 0.937
37 H 0.063 0.937
38 H 0.046 0.954
39 H 0.046 0.954
40 H 0.016 0.984
41 H 0.016 0.984
42 H 0.259 0.741
43 H 0.133 0.867
44 H 0.132 0.868
45 H 0.056 0.944
46 H 0.100 0.900
47 H 0.056 0.944
48 H 0.129 0.871
49 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.638 -14.739 -8.972 33.435
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.165 4.165
3 C 0.084 3.916
4 H 0.114 0.886
5 N -0.386 5.386
6 C 0.301 3.699
7 O -0.404 6.404
8 C -0.180 4.180
9 C -0.140 4.140
10 C -0.148 4.148
11 C -0.018 4.018
12 C -0.557 4.557
13 H 0.073 0.927
14 C -0.146 4.146
15 N -0.534 5.534
16 Si 0.719 3.281
17 H -0.198 1.198
18 H -0.211 1.211
19 H -0.211 1.211
20 C -0.126 4.126
21 C -0.086 4.086
22 C -0.166 4.166
23 C 0.080 3.920
24 O -0.232 6.232
25 C -0.068 4.068
26 C -0.223 4.223
27 C -0.091 4.091
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.064 0.936
31 H 0.087 0.913
32 H 0.080 0.920
33 H 0.232 0.768
34 H 0.107 0.893
35 H 0.107 0.893
36 H 0.082 0.918
37 H 0.082 0.918
38 H 0.065 0.935
39 H 0.065 0.935
40 H 0.034 0.966
41 H 0.034 0.966
42 H 0.069 0.931
43 H 0.151 0.849
44 H 0.150 0.850
45 H 0.074 0.926
46 H 0.118 0.882
47 H 0.075 0.925
48 H 0.147 0.853
49 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 28.005 -14.668 -9.868 33.118
hybrid contribution 0.092 0.406 1.568 1.623
sum 28.096 -14.262 -8.300 32.583
Atomic orbital electron populations
1.21830 0.94344 1.00692 1.03541 1.21942 0.97195 0.95204 1.02144
1.19781 0.89267 0.93903 0.88626 0.88633 1.46248 1.17337 1.58976
1.16083 1.21019 0.80797 0.77557 0.90567 1.90714 1.50814 1.58066
1.40762 1.21804 1.00828 1.00831 0.94504 1.21438 0.92396 1.00458
0.99715 1.21650 1.00277 0.98425 0.94461 1.19102 0.89867 0.95914
0.96899 1.21325 0.99639 1.35417 0.99369 0.92723 1.25051 0.96734
0.96450 0.96408 1.69991 1.07593 1.45268 1.30583 0.86558 0.78438
0.79241 0.83876 1.19802 1.21071 1.21064 1.19880 0.95015 1.03692
0.94028 1.20849 0.93626 0.96874 0.97221 1.20429 0.92770 1.05746
0.97687 1.19069 0.82579 0.96238 0.94115 1.86074 1.15257 1.86366
1.35516 1.23076 0.96215 1.00752 0.86788 1.21212 0.95920 1.08269
0.96879 1.20715 0.92715 0.97414 0.98276 0.92078 0.92014 0.93561
0.91275 0.91954 0.76837 0.89294 0.89267 0.91811 0.91810 0.93537
0.93530 0.96586 0.96583 0.93125 0.84947 0.84995 0.92583 0.88171
0.92508 0.85321 0.85745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 8.52 37.16 0.32 -1.37 16
2 C -0.13 -1.16 5.59 -26.73 -0.15 -1.31 16
3 C 0.19 1.80 2.46 -69.08 -0.17 1.63 16
4 H 0.10 1.07 7.44 -51.92 -0.39 0.69 16
5 N -0.73 -7.24 4.98 -54.93 -0.27 -7.51 16
6 C 0.51 6.85 6.40 -10.99 -0.07 6.78 16
7 O -0.53 -8.96 13.12 5.55 0.07 -8.89 16
8 C -0.14 -1.84 5.70 -27.88 -0.16 -1.99 16
9 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16
10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16
11 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16
12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16
13 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16
14 C 0.05 1.60 5.46 -17.81 -0.10 1.50 16
15 N -0.89 -27.64 13.29 55.43 0.74 -26.91 16
16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
20 C -0.13 -1.05 4.96 -104.60 -0.52 -1.56 16
21 C -0.07 -0.54 9.66 -39.61 -0.38 -0.92 16
22 C -0.15 -1.21 9.99 -39.44 -0.39 -1.60 16
23 C 0.13 1.05 6.69 -39.22 -0.26 0.79 16
24 O -0.32 -2.58 10.50 -19.42 -0.20 -2.78 16
25 C 0.03 0.12 9.81 101.05 0.99 1.11 16
26 C -0.20 -1.49 9.04 -39.43 -0.36 -1.85 16
27 C -0.07 -0.54 9.05 -39.61 -0.36 -0.90 16
28 H 0.06 0.82 5.64 -51.93 -0.29 0.53 16
29 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16
30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16
31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.40 2.95 6.86 -40.82 -0.28 2.67 16
34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
35 H 0.09 1.03 8.14 -51.92 -0.42 0.61 16
36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16
37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16
38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
43 H 0.13 0.87 8.03 -52.49 -0.42 0.45 16
44 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16
45 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16
46 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16
47 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16
48 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16
49 H 0.12 0.71 6.91 -52.49 -0.36 0.34 16
LS Contribution 395.87 15.07 5.97 5.97
Total: -1.00 -34.31 395.87 -9.35 -43.66
By element:
Atomic # 1 Polarization: 6.84 SS G_CDS: -8.31 Total: -1.47 kcal
Atomic # 6 Polarization: -16.75 SS G_CDS: -2.32 Total: -19.07 kcal
Atomic # 7 Polarization: -34.88 SS G_CDS: 0.46 Total: -34.42 kcal
Atomic # 8 Polarization: -11.54 SS G_CDS: -0.13 Total: -11.67 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 5.97 Total: 5.97 kcal
Total: -34.31 -9.35 -43.66 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588255192.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.965 kcal
(2) G-P(sol) polarization free energy of solvation -34.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.276 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.664 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds