Wall clock time and date at job start Tue Mar 31 2020 14:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 109.47480 * 2 1
4 4 H 1.09009 * 109.46852 * 305.00128 * 3 2 1
5 5 N 1.46501 * 109.46983 * 64.99625 * 3 2 1
6 6 C 1.34773 * 120.00377 * 274.99917 * 5 3 2
7 7 O 1.21285 * 120.00094 * 0.02562 * 6 5 3
8 8 C 1.50699 * 120.00253 * 179.97438 * 6 5 3
9 9 C 1.53001 * 109.47346 * 180.02562 * 8 6 5
10 10 C 1.53001 * 109.46965 * 180.02562 * 9 8 6
11 11 C 1.53001 * 109.46965 * 180.02562 * 10 9 8
12 12 C 1.50695 * 109.47024 * 179.97438 * 11 10 9
13 13 H 1.07998 * 120.00246 * 0.02562 * 12 11 10
14 14 C 1.37879 * 120.00165 * 180.02562 * 12 11 10
15 15 N 1.31525 * 119.99607 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 120.00358 * 180.02562 * 14 12 11
17 17 H 1.48496 * 109.47111 * 0.02562 * 16 14 12
18 18 H 1.48499 * 109.46974 * 120.00258 * 16 14 12
19 19 H 1.48507 * 109.47221 * 240.00047 * 16 14 12
20 20 C 1.50700 * 109.47539 * 185.00298 * 3 2 1
21 21 C 1.38266 * 119.94622 * 99.99913 * 20 3 2
22 22 C 1.38145 * 120.05239 * 180.02562 * 21 20 3
23 23 C 1.38725 * 119.94620 * 359.97438 * 22 21 20
24 24 O 1.35898 * 120.05592 * 179.97438 * 23 22 21
25 25 C 1.42902 * 117.00254 * 179.97438 * 24 23 22
26 26 C 1.38731 * 119.88981 * 359.97438 * 23 22 21
27 27 C 1.38143 * 119.94414 * 0.02562 * 26 23 22
28 28 H 1.09002 * 109.46628 * 300.00234 * 1 2 3
29 29 H 1.09000 * 109.46819 * 59.99834 * 1 2 3
30 30 H 1.08996 * 109.46776 * 180.02562 * 1 2 3
31 31 H 1.09000 * 109.47234 * 240.00206 * 2 1 3
32 32 H 1.09002 * 109.47327 * 120.00193 * 2 1 3
33 33 H 0.97003 * 119.99381 * 95.00665 * 5 3 2
34 34 H 1.08993 * 109.47401 * 300.01283 * 8 6 5
35 35 H 1.09012 * 109.46967 * 60.00369 * 8 6 5
36 36 H 1.08999 * 109.47246 * 300.00253 * 9 8 6
37 37 H 1.08997 * 109.46829 * 60.00559 * 9 8 6
38 38 H 1.08999 * 109.47160 * 300.00078 * 10 9 8
39 39 H 1.08997 * 109.47077 * 60.00483 * 10 9 8
40 40 H 1.08994 * 109.47161 * 300.00502 * 11 10 9
41 41 H 1.09005 * 109.46506 * 60.00291 * 11 10 9
42 42 H 0.97002 * 119.99798 * 180.02562 * 15 14 12
43 43 H 1.08002 * 119.97130 * 0.27980 * 21 20 3
44 44 H 1.08000 * 120.02375 * 180.02562 * 22 21 20
45 45 H 1.09005 * 109.47182 * 59.99870 * 25 24 23
46 46 H 1.09001 * 109.47459 * 179.97438 * 25 24 23
47 47 H 1.09001 * 109.47097 * 299.99927 * 25 24 23
48 48 H 1.08001 * 120.02847 * 179.97438 * 26 23 22
49 49 H 1.08001 * 119.97044 * 179.97438 * 27 26 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6054 1.9815 -0.8419
5 7 1.6525 2.0974 1.2518
6 6 0.4353 2.6644 1.3669
7 8 -0.3395 2.6320 0.4343
8 6 0.0363 3.3377 2.6548
9 6 -1.3828 3.8937 2.5214
10 6 -1.7875 4.5777 3.8288
11 6 -3.2069 5.1332 3.6956
12 6 -3.6057 5.8064 4.9835
13 1 -2.9157 5.8356 5.8138
14 6 -4.8516 6.3851 5.1018
15 7 -5.6921 6.3490 4.0908
16 14 -5.3458 7.2202 6.6980
17 1 -4.2295 7.1250 7.6727
18 1 -5.6519 8.6493 6.4347
19 1 -6.5486 6.5508 7.2552
20 6 3.5420 1.4443 -0.1239
21 6 4.1331 1.6873 -1.3500
22 6 5.5097 1.6890 -1.4662
23 6 6.2990 1.4470 -0.3513
24 8 7.6534 1.4476 -0.4632
25 6 8.4028 1.1916 0.7263
26 6 5.7035 1.2045 0.8780
27 6 4.3265 1.2039 0.9890
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 0.0005
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5139 0.8900
33 1 2.2721 2.1231 1.9977
34 1 0.0675 2.6131 3.4684
35 1 0.7278 4.1530 2.8679
36 1 -1.4142 4.6182 1.7077
37 1 -2.0740 3.0781 2.3086
38 1 -1.7560 3.8535 4.6427
39 1 -1.0963 5.3933 4.0411
40 1 -3.2388 5.8572 2.8816
41 1 -3.8978 4.3172 3.4834
42 1 -6.5685 6.7565 4.1740
43 1 3.5182 1.8801 -2.2167
44 1 5.9709 1.8793 -2.4240
45 1 8.1415 0.2075 1.1156
46 1 9.4682 1.2204 0.4979
47 1 8.1703 1.9511 1.4728
48 1 6.3159 1.0154 1.7473
49 1 3.8625 1.0147 1.9457
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000588255192.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:08:58
Heat of formation + Delta-G solvation = -100.968355 kcal
Electronic energy + Delta-G solvation = -25814.493501 eV
Core-core repulsion = 22125.883986 eV
Total energy + Delta-G solvation = -3688.609515 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 1.58 seconds
Orbital eigenvalues (eV)
-41.47928 -40.72035 -38.84888 -36.81621 -36.22097 -34.60207 -33.42092 -32.07416
-31.53754 -31.13310 -28.48369 -27.54822 -26.38022 -24.27650 -23.75934 -22.91065
-21.88379 -21.42842 -21.12651 -19.16806 -18.41907 -18.02656 -17.56261 -16.96419
-16.77355 -16.62544 -16.50186 -16.05746 -15.87806 -15.31536 -14.99580 -14.64995
-14.58252 -14.51865 -14.28721 -13.86684 -13.76174 -13.56402 -13.50730 -13.25600
-13.18183 -12.83217 -12.78949 -12.53717 -12.31269 -12.13053 -12.12034 -12.00735
-11.88832 -11.81748 -11.67607 -11.35665 -11.32972 -11.11017 -10.67416 -10.55081
-10.03078 -9.96388 -9.10311 -8.18242 -6.30267 0.34821 0.37283 1.40545
1.41529 1.54995 1.74594 2.24501 2.38394 2.42430 2.76615 3.14386
3.59739 3.80557 3.90075 3.94776 4.08121 4.13503 4.18281 4.19537
4.30720 4.39302 4.41077 4.44736 4.53346 4.64813 4.69203 4.70979
4.75779 4.78829 4.87749 4.90426 4.92645 5.03256 5.06731 5.16865
5.22301 5.24454 5.34936 5.35287 5.38699 5.46560 5.47040 5.58796
5.70574 5.76937 5.79643 5.89209 6.26254 6.43681 6.62037 6.88454
7.36179 7.39258 8.94093
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.021080 B = 0.001904 C = 0.001800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1327.981131 B =14699.864963 C =15553.636383
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.119 4.119
3 C 0.193 3.807
4 H 0.074 0.926
5 N -0.714 5.714
6 C 0.513 3.487
7 O -0.573 6.573
8 C -0.130 4.130
9 C -0.094 4.094
10 C -0.096 4.096
11 C 0.018 3.982
12 C -0.540 4.540
13 H 0.066 0.934
14 C -0.008 4.008
15 N -0.937 5.937
16 Si 0.970 3.030
17 H -0.257 1.257
18 H -0.279 1.279
19 H -0.279 1.279
20 C -0.133 4.133
21 C -0.074 4.074
22 C -0.161 4.161
23 C 0.114 3.886
24 O -0.338 6.338
25 C 0.018 3.982
26 C -0.205 4.205
27 C -0.072 4.072
28 H 0.040 0.960
29 H 0.040 0.960
30 H 0.055 0.945
31 H 0.080 0.920
32 H 0.077 0.923
33 H 0.412 0.588
34 H 0.117 0.883
35 H 0.114 0.886
36 H 0.042 0.958
37 H 0.043 0.957
38 H 0.060 0.940
39 H 0.059 0.941
40 H -0.016 1.016
41 H -0.015 1.015
42 H 0.262 0.738
43 H 0.139 0.861
44 H 0.137 0.863
45 H 0.066 0.934
46 H 0.116 0.884
47 H 0.064 0.936
48 H 0.150 0.850
49 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 31.165 -15.288 -6.621 35.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.158 4.158
3 C 0.089 3.911
4 H 0.092 0.908
5 N -0.368 5.368
6 C 0.301 3.699
7 O -0.452 6.452
8 C -0.170 4.170
9 C -0.132 4.132
10 C -0.134 4.134
11 C -0.019 4.019
12 C -0.578 4.578
13 H 0.084 0.916
14 C -0.205 4.205
15 N -0.578 5.578
16 Si 0.794 3.206
17 H -0.181 1.181
18 H -0.205 1.205
19 H -0.205 1.205
20 C -0.134 4.134
21 C -0.092 4.092
22 C -0.180 4.180
23 C 0.069 3.931
24 O -0.252 6.252
25 C -0.076 4.076
26 C -0.224 4.224
27 C -0.090 4.090
28 H 0.059 0.941
29 H 0.059 0.941
30 H 0.074 0.926
31 H 0.099 0.901
32 H 0.095 0.905
33 H 0.250 0.750
34 H 0.135 0.865
35 H 0.132 0.868
36 H 0.061 0.939
37 H 0.062 0.938
38 H 0.079 0.921
39 H 0.078 0.922
40 H 0.003 0.997
41 H 0.003 0.997
42 H 0.071 0.929
43 H 0.156 0.844
44 H 0.155 0.845
45 H 0.085 0.915
46 H 0.134 0.866
47 H 0.083 0.917
48 H 0.168 0.832
49 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 30.594 -15.235 -7.496 34.989
hybrid contribution -0.650 0.555 0.780 1.157
sum 29.944 -14.680 -6.716 34.018
Atomic orbital electron populations
1.21770 0.96217 1.00609 1.01506 1.21896 0.95273 0.95180 1.03418
1.19697 0.90163 0.93712 0.87572 0.90791 1.46052 1.16344 1.57606
1.16791 1.21032 0.81356 0.77490 0.90040 1.90714 1.52356 1.59946
1.42169 1.21676 0.97771 1.02217 0.95297 1.21220 0.95450 0.99158
0.97372 1.21451 0.96454 0.99109 0.96342 1.19065 0.93270 0.94232
0.95349 1.21788 1.00224 1.35585 1.00245 0.91597 1.26104 0.96756
0.97156 1.00490 1.70146 1.08145 1.46296 1.33201 0.85329 0.78420
0.77854 0.78999 1.18091 1.20513 1.20460 1.19769 0.94010 1.04943
0.94672 1.20977 0.93808 0.96827 0.97609 1.20587 0.92937 1.06203
0.98270 1.19289 0.82976 0.96217 0.94603 1.86052 1.15233 1.86405
1.37481 1.23340 0.96719 1.01567 0.86011 1.21454 0.96117 1.07580
0.97199 1.20936 0.92785 0.96618 0.98667 0.94095 0.94095 0.92579
0.90116 0.90466 0.74966 0.86523 0.86756 0.93941 0.93788 0.92119
0.92223 0.99744 0.99671 0.92889 0.84365 0.84509 0.91544 0.86599
0.91706 0.83203 0.83708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.32 8.52 71.98 0.61 -2.70 16
2 C -0.12 -2.04 5.59 30.59 0.17 -1.87 16
3 C 0.19 3.48 2.46 44.24 0.11 3.59 16
4 H 0.07 1.69 7.44 -2.38 -0.02 1.68 16
5 N -0.71 -12.82 4.98 -446.09 -2.22 -15.04 16
6 C 0.51 13.29 6.40 87.66 0.56 13.85 16
7 O -0.57 -20.04 13.12 -3.05 -0.04 -20.08 16
8 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16
9 C -0.09 -3.38 4.50 30.60 0.14 -3.24 16
10 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16
11 C 0.02 0.99 4.97 29.85 0.15 1.14 16
12 C -0.54 -31.55 9.11 25.60 0.23 -31.31 16
13 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16
14 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16
15 N -0.94 -59.30 13.29 21.45 0.28 -59.01 16
16 Si 0.97 45.05 29.54 68.60 2.03 47.07 16
17 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16
18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
20 C -0.13 -2.01 4.96 -19.85 -0.10 -2.10 16
21 C -0.07 -1.13 9.66 22.25 0.22 -0.92 16
22 C -0.16 -2.52 9.99 22.36 0.22 -2.30 16
23 C 0.11 1.75 6.69 22.50 0.15 1.90 16
24 O -0.34 -4.99 10.50 -92.40 -0.97 -5.96 16
25 C 0.02 0.12 9.81 113.37 1.11 1.23 16
26 C -0.21 -2.47 9.04 22.37 0.20 -2.27 16
27 C -0.07 -0.86 9.05 22.25 0.20 -0.66 16
28 H 0.04 1.10 5.64 -2.39 -0.01 1.09 16
29 H 0.04 1.09 7.85 -2.39 -0.02 1.07 16
30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
33 H 0.41 4.80 6.86 -92.71 -0.64 4.16 16
34 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16
35 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16
36 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16
37 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16
38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16
39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16
41 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16
42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16
43 H 0.14 1.82 8.03 -2.91 -0.02 1.80 16
44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16
45 H 0.07 0.30 7.66 -2.38 -0.02 0.28 16
46 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16
47 H 0.06 0.32 7.66 -2.39 -0.02 0.30 16
48 H 0.15 1.08 6.30 -2.91 -0.02 1.07 16
49 H 0.15 1.08 6.91 -2.91 -0.02 1.06 16
Total: -1.00 -77.06 395.87 4.14 -72.93
By element:
Atomic # 1 Polarization: 12.25 SS G_CDS: 0.29 Total: 12.54 kcal
Atomic # 6 Polarization: -37.21 SS G_CDS: 4.77 Total: -32.44 kcal
Atomic # 7 Polarization: -72.12 SS G_CDS: -1.94 Total: -74.06 kcal
Atomic # 8 Polarization: -25.03 SS G_CDS: -1.01 Total: -26.04 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal
Total: -77.06 4.14 -72.93 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000588255192.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.043 kcal
(2) G-P(sol) polarization free energy of solvation -77.062 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.105 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.925 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.59 seconds