Wall clock time and date at job start Tue Mar 31 2020 14:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47035 * 2 1 4 4 H 1.08999 * 109.47258 * 53.42114 * 3 2 1 5 5 O 1.42894 * 109.47358 * 293.41896 * 3 2 1 6 6 C 1.42904 * 114.00186 * 150.18922 * 5 3 2 7 7 C 1.53002 * 109.47219 * 184.40649 * 6 5 3 8 8 N 1.46900 * 109.47351 * 64.99838 * 7 6 5 9 9 C 1.47440 * 111.00097 * 69.86946 * 8 7 6 10 10 C 1.54322 * 107.23380 * 123.26073 * 9 8 7 11 11 C 1.55143 * 103.01556 * 22.28485 * 10 9 8 12 12 O 1.42896 * 110.99315 * 82.47881 * 11 10 9 13 13 C 1.50708 * 110.98926 * 206.25820 * 11 10 9 14 14 H 1.07997 * 119.99668 * 118.54622 * 13 11 10 15 15 C 1.37875 * 119.99525 * 298.54343 * 13 11 10 16 16 N 1.31510 * 120.00243 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99387 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47301 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47080 * 120.00487 * 17 15 13 20 20 H 1.48507 * 109.46768 * 240.00169 * 17 15 13 21 21 C 1.47843 * 111.00236 * 190.71999 * 8 7 6 22 22 C 1.50704 * 109.46816 * 173.41881 * 3 2 1 23 23 C 1.38235 * 119.99888 * 264.99807 * 22 3 2 24 24 C 1.38240 * 119.99991 * 180.02562 * 23 22 3 25 25 C 1.38236 * 119.99714 * 359.96272 * 24 23 22 26 26 C 1.38234 * 120.00104 * 0.27081 * 25 24 23 27 27 C 1.38234 * 120.00319 * 359.53969 * 26 25 24 28 28 H 1.09003 * 109.46834 * 294.82049 * 1 2 3 29 29 H 1.08990 * 109.47614 * 54.82366 * 1 2 3 30 30 H 1.09010 * 109.47106 * 174.82766 * 1 2 3 31 31 H 1.09008 * 109.46551 * 240.00297 * 2 1 3 32 32 H 1.09002 * 109.47117 * 120.01082 * 2 1 3 33 33 H 1.09002 * 109.46598 * 304.40598 * 6 5 3 34 34 H 1.08995 * 109.47484 * 64.40078 * 6 5 3 35 35 H 1.09002 * 109.46615 * 184.99452 * 7 6 5 36 36 H 1.08994 * 109.47032 * 304.99455 * 7 6 5 37 37 H 1.09001 * 109.89432 * 242.66602 * 9 8 7 38 38 H 1.09001 * 109.88839 * 3.69374 * 9 8 7 39 39 H 1.08997 * 110.70808 * 140.66714 * 10 9 8 40 40 H 1.08995 * 110.70301 * 263.73072 * 10 9 8 41 41 H 0.96702 * 114.00051 * 61.44708 * 12 11 10 42 42 H 0.96999 * 119.99723 * 179.97438 * 16 15 13 43 43 H 1.09004 * 110.36976 * 332.46107 * 21 8 7 44 44 H 1.08999 * 110.37701 * 94.80087 * 21 8 7 45 45 H 1.07998 * 120.00188 * 0.02562 * 23 22 3 46 46 H 1.07994 * 119.99970 * 179.97438 * 24 23 22 47 47 H 1.08004 * 119.99810 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.99932 * 179.72167 * 26 25 24 49 49 H 1.07992 * 120.00683 * 180.21009 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5837 1.9891 0.8252 5 8 1.6940 2.0700 -1.2362 6 6 1.4892 3.4806 -1.1346 7 6 1.0192 4.0263 -2.4846 8 7 -0.2991 3.4645 -2.8078 9 6 -1.3394 4.0119 -1.9178 10 6 -2.4170 4.6553 -2.8157 11 6 -2.2114 3.9389 -4.1763 12 8 -2.8742 2.6731 -4.1937 13 6 -2.6776 4.8048 -5.3183 14 1 -1.9768 5.1226 -6.0760 15 6 -3.9989 5.1913 -5.3955 16 7 -4.8521 4.8047 -4.4725 17 14 -4.5768 6.2641 -6.8114 18 1 -3.4308 6.5599 -7.7082 19 1 -5.6320 5.5503 -7.5745 20 1 -5.1271 7.5355 -6.2764 21 6 -0.6729 3.7610 -4.2071 22 6 3.5382 1.4455 0.1628 23 6 4.0967 1.5967 1.4183 24 6 5.4710 1.6001 1.5676 25 6 6.2867 1.4514 0.4616 26 6 5.7283 1.3050 -0.7945 27 6 4.3540 1.2977 -0.9434 28 1 -0.3633 0.4314 0.9328 29 1 -0.3634 0.5920 -0.8399 30 1 -0.3634 -1.0236 -0.0927 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 0.7324 3.6842 -0.3770 34 1 2.4245 3.9643 -0.8530 35 1 0.9482 5.1128 -2.4324 36 1 1.7335 3.7455 -3.2585 37 1 -1.7805 3.2100 -1.3257 38 1 -0.9053 4.7637 -1.2586 39 1 -3.4143 4.4576 -2.4229 40 1 -2.2479 5.7277 -2.9124 41 1 -3.8328 2.7294 -4.0794 42 1 -5.7815 5.0769 -4.5267 43 1 -0.1913 4.6798 -4.5419 44 1 -0.3998 2.9298 -4.8572 45 1 3.4593 1.7123 2.2825 46 1 5.9072 1.7187 2.5484 47 1 7.3604 1.4544 0.5782 48 1 6.3657 1.1933 -1.6591 49 1 3.9177 1.1799 -1.9241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593035819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:00 Heat of formation + Delta-G solvation = -73.425304 kcal Electronic energy + Delta-G solvation = -27396.914377 eV Core-core repulsion = 23709.499218 eV Total energy + Delta-G solvation = -3687.415159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.78714 -38.50741 -37.47817 -34.88173 -33.52853 -32.10068 -31.09181 -31.00674 -30.48376 -28.19123 -27.38671 -25.80450 -24.31658 -22.81174 -22.33258 -22.05710 -20.71284 -19.69731 -19.48007 -17.28233 -17.01100 -16.64871 -15.78598 -15.18551 -15.04056 -14.85562 -14.80296 -14.58522 -14.07442 -13.97333 -13.68914 -13.50396 -13.24971 -13.13771 -12.68027 -12.36679 -12.31171 -12.00516 -11.93370 -11.68487 -11.37552 -11.26585 -11.18931 -11.16963 -10.98102 -10.84033 -10.81664 -10.70428 -10.41975 -10.36018 -10.20895 -9.80395 -9.43962 -9.13334 -9.04505 -8.85592 -8.57326 -8.02867 -7.48402 -6.18714 -4.26615 1.19485 1.28311 3.21769 3.30565 3.34788 3.63467 3.79937 4.30787 4.57568 4.69508 4.76836 4.85107 5.01665 5.04736 5.09376 5.12193 5.33318 5.36682 5.36977 5.46446 5.50609 5.62608 5.66115 5.76522 5.79469 5.85569 5.91694 5.93747 6.02111 6.06767 6.07144 6.19421 6.20465 6.26620 6.31704 6.39222 6.48158 6.51741 6.58088 6.73769 6.87433 6.92857 7.12283 7.42563 7.45977 7.52967 7.71243 7.83532 7.89543 8.21447 8.76104 9.42137 9.56878 10.88113 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002634 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.198916 B =10626.332070 C =11107.300067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.127 3.873 4 H 0.064 0.936 5 O -0.350 6.350 6 C 0.072 3.928 7 C 0.051 3.949 8 N -0.515 5.515 9 C 0.044 3.956 10 C -0.144 4.144 11 C 0.252 3.748 12 O -0.577 6.577 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.284 1.284 21 C 0.060 3.940 22 C -0.108 4.108 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.093 4.093 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.376 0.624 42 H 0.265 0.735 43 H 0.044 0.956 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.622 -5.337 12.487 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.069 3.931 4 H 0.082 0.918 5 O -0.268 6.268 6 C -0.005 4.005 7 C -0.077 4.077 8 N -0.239 5.239 9 C -0.084 4.084 10 C -0.183 4.183 11 C 0.212 3.788 12 O -0.385 6.385 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.210 1.210 21 C -0.068 4.068 22 C -0.108 4.108 23 C -0.134 4.134 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.111 4.111 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.224 0.776 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 17.077 -6.176 12.350 21.961 hybrid contribution -0.859 2.014 -0.385 2.223 sum 16.218 -4.162 11.965 20.579 Atomic orbital electron populations 1.21761 0.94583 1.01983 1.02715 1.21546 0.96953 0.93902 1.02329 1.20972 0.88915 0.95067 0.88150 0.91783 1.88066 1.89285 1.20248 1.29232 1.22579 0.98041 0.81861 0.98026 1.22235 0.93396 0.95871 0.96234 1.63579 1.00254 1.56147 1.03928 1.22857 0.93280 0.96765 0.95489 1.23250 0.98149 0.98962 0.97979 1.19523 0.86717 0.81537 0.91068 1.86157 1.24738 1.31420 1.96177 1.21599 0.94792 1.31094 1.09787 0.92131 1.25000 0.96636 0.95525 0.95987 1.69751 1.04034 1.45923 1.33695 0.86445 0.78766 0.79979 0.82228 1.19706 1.20793 1.20984 1.22979 0.96995 0.98650 0.88126 1.20593 0.96797 0.99886 0.93534 1.21017 0.95104 1.00549 0.96725 1.21081 0.93621 1.00946 0.98642 1.21144 0.99608 1.00553 0.92943 1.21201 0.95198 1.00475 0.97315 1.21087 0.92979 0.97801 0.99206 0.93432 0.90413 0.92883 0.91029 0.91394 0.93461 0.93962 0.93872 0.90625 0.91877 0.94968 0.90546 0.92806 0.77556 0.92501 0.93791 0.91153 0.86302 0.86305 0.86396 0.86168 0.85243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.87 37.16 0.37 -1.51 16 2 C -0.11 -1.25 5.62 -26.73 -0.15 -1.40 16 3 C 0.13 1.53 2.30 -27.89 -0.06 1.47 16 4 H 0.06 0.73 7.63 -51.93 -0.40 0.33 16 5 O -0.35 -5.12 8.60 -35.23 -0.30 -5.42 16 6 C 0.07 1.01 5.90 37.16 0.22 1.23 16 7 C 0.05 0.83 4.92 -3.82 -0.02 0.81 16 8 N -0.51 -10.11 5.11 -231.25 -1.18 -11.29 16 9 C 0.04 0.86 6.14 -2.84 -0.02 0.85 16 10 C -0.14 -3.34 5.37 -24.91 -0.13 -3.48 16 11 C 0.25 6.31 0.87 -89.63 -0.08 6.24 16 12 O -0.58 -15.33 13.16 -35.23 -0.46 -15.79 16 13 C -0.53 -14.41 8.27 -34.44 -0.28 -14.69 16 14 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 15 C 0.07 1.88 5.29 -17.82 -0.09 1.79 16 16 N -0.89 -23.98 10.75 55.43 0.60 -23.38 16 17 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.06 1.32 5.86 -2.30 -0.01 1.31 16 22 C -0.11 -1.22 4.95 -104.62 -0.52 -1.74 16 23 C -0.12 -1.15 9.68 -39.58 -0.38 -1.54 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.09 -1.06 9.35 -39.58 -0.37 -1.43 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.66 6.88 -51.93 -0.36 0.30 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 36 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.03 0.57 6.94 -51.93 -0.36 0.21 16 39 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 40 H 0.05 1.27 8.04 -51.93 -0.42 0.86 16 41 H 0.38 10.01 7.56 45.56 0.34 10.35 16 42 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.04 0.94 7.70 -51.93 -0.40 0.54 16 44 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 48 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 49 H 0.13 1.56 7.63 -52.49 -0.40 1.16 16 LS Contribution 392.01 15.07 5.91 5.91 Total: -1.00 -28.39 392.01 -11.01 -39.39 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.81 Total: 11.67 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.73 Total: -16.80 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.59 Total: -34.67 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.77 Total: -21.21 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.39 -11.01 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593035819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.031 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds