Wall clock time and date at job start Tue Mar 31 2020 14:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.09003 * 109.46966 * 305.28499 * 3 2 1 5 5 O 1.42902 * 109.46974 * 65.27932 * 3 2 1 6 6 C 1.42898 * 113.99957 * 214.57973 * 5 3 2 7 7 C 1.53007 * 109.47014 * 174.28781 * 6 5 3 8 8 N 1.46898 * 109.47371 * 64.99626 * 7 6 5 9 9 C 1.48526 * 111.00187 * 287.39809 * 8 7 6 10 10 C 1.55101 * 103.28478 * 200.33176 * 9 8 7 11 11 C 1.54592 * 102.84449 * 37.30971 * 10 9 8 12 12 O 1.42891 * 110.31296 * 97.11696 * 11 10 9 13 13 C 1.50703 * 110.30502 * 219.18883 * 11 10 9 14 14 H 1.07996 * 120.00393 * 117.20673 * 13 11 10 15 15 C 1.37885 * 119.99552 * 296.93032 * 13 11 10 16 16 N 1.31515 * 120.00028 * 0.27697 * 15 13 11 17 17 Si 1.86803 * 119.99641 * 180.28041 * 15 13 11 18 18 H 1.48498 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47013 * 120.00047 * 17 15 13 20 20 H 1.48499 * 109.46447 * 239.99607 * 17 15 13 21 21 C 1.47900 * 110.99824 * 169.99913 * 8 7 6 22 22 C 1.50701 * 109.47585 * 185.28060 * 3 2 1 23 23 C 1.38229 * 120.00075 * 279.72554 * 22 3 2 24 24 C 1.38235 * 119.99952 * 179.76204 * 23 22 3 25 25 C 1.38232 * 119.99949 * 0.51358 * 24 23 22 26 26 C 1.38234 * 119.99999 * 359.73948 * 25 24 23 27 27 C 1.38235 * 119.99583 * 99.99984 * 22 3 2 28 28 H 1.08996 * 109.46912 * 54.99637 * 1 2 3 29 29 H 1.09006 * 109.47040 * 174.99249 * 1 2 3 30 30 H 1.09001 * 109.47331 * 294.99181 * 1 2 3 31 31 H 1.09000 * 109.47280 * 239.99854 * 2 1 3 32 32 H 1.08996 * 109.47466 * 119.99930 * 2 1 3 33 33 H 1.08996 * 109.47681 * 54.28650 * 6 5 3 34 34 H 1.08998 * 109.47201 * 294.28183 * 6 5 3 35 35 H 1.09004 * 109.46952 * 304.99741 * 7 6 5 36 36 H 1.09003 * 109.46867 * 184.99824 * 7 6 5 37 37 H 1.09004 * 110.66885 * 318.71325 * 9 8 7 38 38 H 1.09008 * 110.66730 * 81.67270 * 9 8 7 39 39 H 1.09002 * 110.70923 * 278.99118 * 10 9 8 40 40 H 1.09004 * 110.80550 * 155.66349 * 10 9 8 41 41 H 0.96702 * 114.00270 * 62.78635 * 12 11 10 42 42 H 0.97003 * 119.99747 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.91950 * 26.49740 * 21 8 7 44 44 H 1.08999 * 110.08654 * 265.28791 * 21 8 7 45 45 H 1.08006 * 119.99753 * 0.02562 * 23 22 3 46 46 H 1.07999 * 119.99848 * 180.23265 * 24 23 22 47 47 H 1.07999 * 119.99980 * 179.72317 * 25 24 23 48 48 H 1.08001 * 120.00060 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00500 * 0.02562 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8389 5 8 1.6676 2.0793 1.2238 6 6 1.3607 3.4682 1.0863 7 6 0.8414 4.0102 2.4196 8 7 1.9111 3.9461 3.4243 9 6 2.1615 2.5444 3.8467 10 6 2.8784 2.7063 5.2125 11 6 2.1525 3.9184 5.8401 12 8 1.1322 3.4755 6.7372 13 6 3.1371 4.8005 6.5636 14 1 3.2956 5.8167 6.2339 15 6 3.8316 4.3120 7.6500 16 7 3.6387 3.0746 8.0515 17 14 5.0464 5.4080 8.5516 18 1 5.0801 6.7451 7.9064 19 1 4.6260 5.5519 9.9685 20 1 6.3990 4.7977 8.4961 21 6 1.5287 4.6753 4.6529 22 6 3.5413 1.4445 -0.1308 23 6 4.3320 1.2071 0.9779 24 6 5.7091 1.2042 0.8570 25 6 6.2956 1.4491 -0.3705 26 6 5.5050 1.6917 -1.4782 27 6 4.1278 1.6894 -1.3584 28 1 -0.3633 0.5895 -0.8418 29 1 -0.3633 -1.0238 -0.0897 30 1 -0.3634 0.4342 0.9314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5970 3.5974 0.3194 34 1 2.2603 4.0123 0.7987 35 1 -0.0051 3.4088 2.7513 36 1 0.5240 5.0452 2.2922 37 1 1.2218 2.0056 3.9685 38 1 2.8050 2.0354 3.1290 39 1 3.9370 2.9226 5.0689 40 1 2.7454 1.8162 5.8275 41 1 1.4646 2.9736 7.4940 42 1 4.1270 2.7311 8.8160 43 1 0.4433 4.6919 4.7523 44 1 1.9139 5.6944 4.6186 45 1 3.8738 1.0198 1.9379 46 1 6.3267 1.0150 1.7225 47 1 7.3715 1.4512 -0.4641 48 1 5.9632 1.8834 -2.4372 49 1 3.5101 1.8797 -2.2236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593035820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:10 Heat of formation + Delta-G solvation = -73.344459 kcal Electronic energy + Delta-G solvation = -28032.076008 eV Core-core repulsion = 24344.664355 eV Total energy + Delta-G solvation = -3687.411653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.71862 -38.41573 -37.45460 -34.93152 -33.56977 -32.01496 -31.09835 -30.90658 -30.51764 -27.99553 -27.33677 -25.82554 -24.29521 -22.66952 -22.20322 -21.89072 -20.71916 -20.03770 -19.28651 -17.19875 -17.00150 -16.72078 -15.77628 -15.33258 -14.95259 -14.78493 -14.59514 -14.38457 -14.06202 -13.84380 -13.75032 -13.37094 -13.28980 -13.14528 -12.67865 -12.55192 -12.06750 -11.96707 -11.84923 -11.76367 -11.42187 -11.24886 -11.19275 -11.06558 -10.93779 -10.83424 -10.73912 -10.63618 -10.40895 -10.34102 -10.04721 -9.82248 -9.40667 -9.04805 -8.86075 -8.71487 -8.51957 -7.99373 -7.64295 -6.12763 -4.18408 1.35476 1.46608 3.26732 3.35024 3.40068 3.72709 3.84924 4.37754 4.61499 4.66920 4.86453 4.96954 5.01916 5.07079 5.15734 5.17661 5.21982 5.34738 5.46289 5.50416 5.56711 5.59820 5.67815 5.72471 5.82303 5.85092 5.95096 6.01343 6.05426 6.07629 6.17781 6.22427 6.28273 6.31137 6.44506 6.47156 6.53724 6.57037 6.63955 6.78981 7.03937 7.05121 7.24801 7.38760 7.43148 7.63857 7.79772 7.83907 7.94456 8.25542 8.83351 9.48362 9.59215 10.94812 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003773 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.820545 B = 7418.410317 C = 8586.042115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.129 3.871 4 H 0.064 0.936 5 O -0.361 6.361 6 C 0.071 3.929 7 C 0.048 3.952 8 N -0.511 5.511 9 C 0.044 3.956 10 C -0.119 4.119 11 C 0.242 3.758 12 O -0.596 6.596 13 C -0.526 4.526 14 H 0.061 0.939 15 C 0.068 3.932 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.053 3.947 22 C -0.109 4.109 23 C -0.084 4.084 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.117 4.117 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.382 0.618 42 H 0.265 0.735 43 H 0.033 0.967 44 H 0.076 0.924 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -5.616 -18.844 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.071 3.929 4 H 0.082 0.918 5 O -0.280 6.280 6 C -0.006 4.006 7 C -0.081 4.081 8 N -0.235 5.235 9 C -0.083 4.083 10 C -0.157 4.157 11 C 0.202 3.798 12 O -0.405 6.405 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.074 4.074 22 C -0.109 4.109 23 C -0.102 4.102 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.135 4.135 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.047 0.953 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.232 0.768 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.141 0.859 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.218 -5.285 -19.209 19.960 hybrid contribution 0.475 0.128 1.022 1.134 sum -0.743 -5.157 -18.187 18.918 Atomic orbital electron populations 1.21722 0.95240 1.01369 1.02299 1.21617 0.96346 0.94576 1.02799 1.20962 0.89509 0.94341 0.88074 0.91820 1.88069 1.87801 1.22540 1.29599 1.22590 0.98816 0.82126 0.97052 1.22262 0.93618 0.99884 0.92346 1.64790 1.37289 1.11896 1.09557 1.23347 0.98795 0.88613 0.97572 1.23008 0.99724 0.99837 0.93174 1.19363 0.84551 0.89959 0.85891 1.86087 1.37738 1.76478 1.40201 1.21756 1.22153 0.99134 1.13357 0.92066 1.25003 0.96504 0.95028 0.96808 1.69676 1.43034 1.14574 1.26698 0.86441 0.80719 0.80826 0.79429 1.19703 1.20978 1.20957 1.22834 0.97483 0.98250 0.88848 1.20389 0.96238 1.00541 0.93767 1.21137 0.93261 0.97043 0.98771 1.21247 0.95169 0.99801 0.97546 1.21150 0.99654 1.00037 0.93107 1.21040 0.93724 1.01243 0.98542 1.20948 0.94928 1.00847 0.96798 0.93212 0.92808 0.91779 0.91066 0.90805 0.93741 0.92620 0.94391 0.90219 0.95253 0.90572 0.91752 0.92021 0.76755 0.92540 0.94904 0.90597 0.85152 0.85941 0.86405 0.86449 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.76 37.16 0.36 -1.06 16 2 C -0.12 -1.20 5.62 -26.73 -0.15 -1.35 16 3 C 0.13 1.49 2.33 -27.88 -0.06 1.43 16 4 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 5 O -0.36 -5.09 6.32 -35.23 -0.22 -5.31 16 6 C 0.07 0.97 6.13 37.16 0.23 1.20 16 7 C 0.05 0.77 5.27 -3.82 -0.02 0.75 16 8 N -0.51 -10.18 5.25 -230.34 -1.21 -11.39 16 9 C 0.04 0.90 5.33 -1.81 -0.01 0.89 16 10 C -0.12 -2.85 5.42 -24.78 -0.13 -2.99 16 11 C 0.24 6.21 0.99 -90.41 -0.09 6.12 16 12 O -0.60 -16.00 12.92 -35.23 -0.46 -16.46 16 13 C -0.53 -14.50 8.11 -34.44 -0.28 -14.78 16 14 H 0.06 1.69 7.34 -52.49 -0.39 1.31 16 15 C 0.07 1.84 5.26 -17.82 -0.09 1.74 16 16 N -0.90 -24.53 10.88 55.43 0.60 -23.93 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.05 1.20 6.13 -2.75 -0.02 1.19 16 22 C -0.11 -1.35 4.97 -104.63 -0.52 -1.87 16 23 C -0.08 -1.16 9.36 -39.59 -0.37 -1.53 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.13 -1.36 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.29 9.67 -39.58 -0.38 -1.67 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.71 7.96 -51.93 -0.41 0.30 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.04 0.50 7.96 -51.93 -0.41 0.08 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.63 7.83 -51.93 -0.41 0.22 16 36 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 37 H 0.03 0.62 7.81 -51.93 -0.41 0.21 16 38 H 0.08 1.47 4.90 -51.92 -0.25 1.22 16 39 H 0.06 1.65 7.86 -51.93 -0.41 1.24 16 40 H 0.06 1.54 8.02 -51.93 -0.42 1.13 16 41 H 0.38 10.39 7.17 45.56 0.33 10.71 16 42 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.03 0.73 7.59 -51.93 -0.39 0.34 16 44 H 0.08 1.72 7.39 -51.93 -0.38 1.34 16 45 H 0.13 1.95 5.89 -52.48 -0.31 1.64 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.12 1.02 8.04 -52.49 -0.42 0.60 16 LS Contribution 385.26 15.07 5.81 5.81 Total: -1.00 -28.97 385.26 -10.85 -39.81 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -7.61 Total: 12.70 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.73 Total: -17.38 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.61 Total: -35.32 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.68 Total: -21.77 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.97 -10.85 -39.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593035820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.530 kcal (2) G-P(sol) polarization free energy of solvation -28.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds