Wall clock time and date at job start Tue Mar 31 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47374 * 2 1 4 4 H 1.09003 * 109.46966 * 305.28499 * 3 2 1 5 5 O 1.42902 * 109.46974 * 65.27932 * 3 2 1 6 6 C 1.42898 * 113.99957 * 214.57973 * 5 3 2 7 7 C 1.53007 * 109.47014 * 174.28781 * 6 5 3 8 8 N 1.46898 * 109.47371 * 64.99626 * 7 6 5 9 9 C 1.48526 * 111.00187 * 287.39809 * 8 7 6 10 10 C 1.55101 * 103.28478 * 200.33176 * 9 8 7 11 11 C 1.54592 * 102.84449 * 37.30971 * 10 9 8 12 12 O 1.42891 * 110.31296 * 97.11696 * 11 10 9 13 13 C 1.50703 * 110.30502 * 219.18883 * 11 10 9 14 14 H 1.07996 * 120.00393 * 117.20673 * 13 11 10 15 15 C 1.37885 * 119.99552 * 296.93032 * 13 11 10 16 16 N 1.31515 * 120.00028 * 0.27697 * 15 13 11 17 17 Si 1.86803 * 119.99641 * 180.28041 * 15 13 11 18 18 H 1.48498 * 109.47364 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47013 * 120.00047 * 17 15 13 20 20 H 1.48499 * 109.46447 * 239.99607 * 17 15 13 21 21 C 1.47900 * 110.99824 * 169.99913 * 8 7 6 22 22 C 1.50701 * 109.47585 * 185.28060 * 3 2 1 23 23 C 1.38229 * 120.00075 * 279.72554 * 22 3 2 24 24 C 1.38235 * 119.99952 * 179.76204 * 23 22 3 25 25 C 1.38232 * 119.99949 * 0.51358 * 24 23 22 26 26 C 1.38234 * 119.99999 * 359.73948 * 25 24 23 27 27 C 1.38235 * 119.99583 * 99.99984 * 22 3 2 28 28 H 1.08996 * 109.46912 * 54.99637 * 1 2 3 29 29 H 1.09006 * 109.47040 * 174.99249 * 1 2 3 30 30 H 1.09001 * 109.47331 * 294.99181 * 1 2 3 31 31 H 1.09000 * 109.47280 * 239.99854 * 2 1 3 32 32 H 1.08996 * 109.47466 * 119.99930 * 2 1 3 33 33 H 1.08996 * 109.47681 * 54.28650 * 6 5 3 34 34 H 1.08998 * 109.47201 * 294.28183 * 6 5 3 35 35 H 1.09004 * 109.46952 * 304.99741 * 7 6 5 36 36 H 1.09003 * 109.46867 * 184.99824 * 7 6 5 37 37 H 1.09004 * 110.66885 * 318.71325 * 9 8 7 38 38 H 1.09008 * 110.66730 * 81.67270 * 9 8 7 39 39 H 1.09002 * 110.70923 * 278.99118 * 10 9 8 40 40 H 1.09004 * 110.80550 * 155.66349 * 10 9 8 41 41 H 0.96702 * 114.00270 * 62.78635 * 12 11 10 42 42 H 0.97003 * 119.99747 * 180.02562 * 16 15 13 43 43 H 1.09003 * 109.91950 * 26.49740 * 21 8 7 44 44 H 1.08999 * 110.08654 * 265.28791 * 21 8 7 45 45 H 1.08006 * 119.99753 * 0.02562 * 23 22 3 46 46 H 1.07999 * 119.99848 * 180.23265 * 24 23 22 47 47 H 1.07999 * 119.99980 * 179.72317 * 25 24 23 48 48 H 1.08001 * 120.00060 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00500 * 0.02562 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8389 5 8 1.6676 2.0793 1.2238 6 6 1.3607 3.4682 1.0863 7 6 0.8414 4.0102 2.4196 8 7 1.9111 3.9461 3.4243 9 6 2.1615 2.5444 3.8467 10 6 2.8784 2.7063 5.2125 11 6 2.1525 3.9184 5.8401 12 8 1.1322 3.4755 6.7372 13 6 3.1371 4.8005 6.5636 14 1 3.2956 5.8167 6.2339 15 6 3.8316 4.3120 7.6500 16 7 3.6387 3.0746 8.0515 17 14 5.0464 5.4080 8.5516 18 1 5.0801 6.7451 7.9064 19 1 4.6260 5.5519 9.9685 20 1 6.3990 4.7977 8.4961 21 6 1.5287 4.6753 4.6529 22 6 3.5413 1.4445 -0.1308 23 6 4.3320 1.2071 0.9779 24 6 5.7091 1.2042 0.8570 25 6 6.2956 1.4491 -0.3705 26 6 5.5050 1.6917 -1.4782 27 6 4.1278 1.6894 -1.3584 28 1 -0.3633 0.5895 -0.8418 29 1 -0.3633 -1.0238 -0.0897 30 1 -0.3634 0.4342 0.9314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.5970 3.5974 0.3194 34 1 2.2603 4.0123 0.7987 35 1 -0.0051 3.4088 2.7513 36 1 0.5240 5.0452 2.2922 37 1 1.2218 2.0056 3.9685 38 1 2.8050 2.0354 3.1290 39 1 3.9370 2.9226 5.0689 40 1 2.7454 1.8162 5.8275 41 1 1.4646 2.9736 7.4940 42 1 4.1270 2.7311 8.8160 43 1 0.4433 4.6919 4.7523 44 1 1.9139 5.6944 4.6186 45 1 3.8738 1.0198 1.9379 46 1 6.3267 1.0150 1.7225 47 1 7.3715 1.4512 -0.4641 48 1 5.9632 1.8834 -2.4372 49 1 3.5101 1.8797 -2.2236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593035820.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:09 Heat of formation + Delta-G solvation = -90.902985 kcal Electronic energy + Delta-G solvation = -28032.837403 eV Core-core repulsion = 24344.664355 eV Total energy + Delta-G solvation = -3688.173048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 4.01 seconds Orbital eigenvalues (eV) -40.69748 -40.00973 -38.59757 -36.65347 -34.63799 -34.14067 -32.30055 -31.86776 -31.65441 -29.82496 -28.95200 -26.75084 -26.20108 -23.63965 -23.25282 -23.02628 -21.77772 -21.51830 -21.21511 -19.10843 -18.10208 -17.74452 -17.10464 -16.86546 -16.47580 -16.30201 -15.82583 -15.58919 -15.39028 -15.18204 -15.02162 -14.61910 -14.37109 -14.23163 -13.99164 -13.89247 -13.62887 -13.33698 -13.30694 -13.07946 -12.86174 -12.77393 -12.64755 -12.46205 -12.27799 -12.18723 -12.05726 -11.91815 -11.85172 -11.82116 -11.73691 -11.42848 -11.05191 -10.61035 -10.41560 -10.06669 -9.76354 -9.60510 -9.27995 -8.20644 -6.34495 0.46662 0.56027 1.38850 1.41417 1.52834 2.39428 2.77103 2.94817 3.00060 3.18101 3.77469 3.94788 3.98154 4.06710 4.14840 4.19004 4.24972 4.30270 4.32255 4.38754 4.43281 4.46938 4.51375 4.60672 4.63060 4.65654 4.69680 4.76594 4.81556 4.94784 4.97910 5.04134 5.10123 5.12129 5.16726 5.19780 5.25788 5.38538 5.44231 5.47010 5.59932 5.61187 5.68438 5.71327 5.78026 6.03210 6.16521 6.17451 6.28393 6.45392 6.70287 7.35268 7.43699 8.85642 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.003773 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.820545 B = 7418.410317 C = 8586.042115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.129 3.871 4 H 0.086 0.914 5 O -0.383 6.383 6 C 0.077 3.923 7 C 0.045 3.955 8 N -0.513 5.513 9 C 0.064 3.936 10 C -0.109 4.109 11 C 0.226 3.774 12 O -0.602 6.602 13 C -0.553 4.553 14 H 0.054 0.946 15 C 0.027 3.973 16 N -0.916 5.916 17 Si 0.960 3.040 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.061 3.939 22 C -0.117 4.117 23 C -0.109 4.109 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.118 4.118 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.034 0.966 36 H 0.098 0.902 37 H 0.024 0.976 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.376 0.624 42 H 0.268 0.732 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.106 0.894 46 H 0.120 0.880 47 H 0.138 0.862 48 H 0.147 0.853 49 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.274 -5.062 -21.512 22.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C 0.071 3.929 4 H 0.104 0.896 5 O -0.302 6.302 6 C 0.000 4.000 7 C -0.083 4.083 8 N -0.238 5.238 9 C -0.063 4.063 10 C -0.148 4.148 11 C 0.186 3.814 12 O -0.411 6.411 13 C -0.591 4.591 14 H 0.072 0.928 15 C -0.173 4.173 16 N -0.556 5.556 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.204 1.204 21 C -0.067 4.067 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.135 4.135 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.042 0.958 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.226 0.774 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.138 0.862 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.176 -4.735 -21.892 22.429 hybrid contribution 0.470 -0.081 1.822 1.883 sum -0.706 -4.816 -20.070 20.652 Atomic orbital electron populations 1.21684 0.94528 1.02127 1.01858 1.21607 0.96880 0.93923 1.02616 1.21130 0.89161 0.94877 0.87721 0.89614 1.88038 1.88001 1.22696 1.31469 1.22525 0.99378 0.81920 0.96156 1.22432 0.92335 1.01324 0.92250 1.64778 1.39300 1.10804 1.08933 1.23126 0.98164 0.89287 0.95764 1.22786 0.98570 0.98517 0.94959 1.19630 0.84641 0.90557 0.86543 1.86079 1.38342 1.76444 1.40261 1.21995 1.23434 0.99216 1.14486 0.92822 1.25708 0.97920 0.96289 0.97362 1.69760 1.43414 1.15569 1.26848 0.85482 0.78609 0.79105 0.78260 1.19529 1.20345 1.20439 1.22676 0.97133 0.97969 0.88902 1.20534 0.96637 1.00580 0.93936 1.21062 0.93981 0.99113 0.98546 1.21373 0.95009 1.00796 0.98551 1.21431 1.00940 0.99489 0.92661 1.21438 0.93746 0.99814 0.99428 1.21284 0.95535 0.99779 0.96951 0.91657 0.91880 0.93748 0.89393 0.92834 0.90285 0.93421 0.94770 0.88357 0.95771 0.89361 0.93991 0.93872 0.77408 0.92248 0.94831 0.90916 0.87598 0.86239 0.84439 0.83544 0.83814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.76 71.98 0.70 -1.80 16 2 C -0.11 -2.17 5.62 30.59 0.17 -2.00 16 3 C 0.13 2.73 2.33 29.85 0.07 2.80 16 4 H 0.09 1.44 7.51 -2.39 -0.02 1.42 16 5 O -0.38 -10.36 6.32 -148.98 -0.94 -11.30 16 6 C 0.08 1.94 6.13 71.98 0.44 2.38 16 7 C 0.04 1.37 5.27 86.31 0.45 1.83 16 8 N -0.51 -20.42 5.25 -882.65 -4.63 -25.05 16 9 C 0.06 2.68 5.33 86.71 0.46 3.15 16 10 C -0.11 -5.47 5.42 31.86 0.17 -5.30 16 11 C 0.23 11.89 0.99 -10.66 -0.01 11.88 16 12 O -0.60 -33.27 12.92 -148.98 -1.93 -35.19 16 13 C -0.55 -31.19 8.11 25.60 0.21 -30.98 16 14 H 0.05 3.03 7.34 -2.91 -0.02 3.00 16 15 C 0.03 1.48 5.26 84.66 0.45 1.92 16 16 N -0.92 -50.94 10.88 21.45 0.23 -50.71 16 17 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 C 0.06 2.78 6.13 86.45 0.53 3.31 16 22 C -0.12 -2.73 4.97 -19.87 -0.10 -2.83 16 23 C -0.11 -3.06 9.36 22.27 0.21 -2.85 16 24 C -0.14 -3.61 10.05 22.27 0.22 -3.39 16 25 C -0.13 -2.69 10.05 22.27 0.22 -2.47 16 26 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 27 C -0.12 -2.24 9.67 22.27 0.22 -2.03 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.04 0.94 7.96 -2.39 -0.02 0.92 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.47 7.96 -2.39 -0.02 1.45 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.03 1.09 7.83 -2.39 -0.02 1.07 16 36 H 0.10 2.64 8.08 -2.39 -0.02 2.62 16 37 H 0.02 1.03 7.81 -2.39 -0.02 1.01 16 38 H 0.09 3.52 4.90 -2.38 -0.01 3.51 16 39 H 0.04 2.24 7.86 -2.39 -0.02 2.22 16 40 H 0.04 2.26 8.02 -2.39 -0.02 2.24 16 41 H 0.38 21.20 7.17 -74.06 -0.53 20.67 16 42 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.03 1.50 7.59 -2.39 -0.02 1.48 16 44 H 0.07 3.32 7.39 -2.39 -0.02 3.31 16 45 H 0.11 3.40 5.89 -2.91 -0.02 3.38 16 46 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 47 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 48 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 49 H 0.14 1.90 8.04 -2.91 -0.02 1.88 16 Total: -1.00 -63.35 385.26 -0.20 -63.55 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: 0.39 Total: 41.43 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 4.64 Total: -28.49 kcal Atomic # 7 Polarization: -71.36 SS G_CDS: -4.40 Total: -75.75 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -2.87 Total: -46.50 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -63.35 -0.20 -63.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593035820.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.353 kcal (2) G-P(sol) polarization free energy of solvation -63.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.02 seconds