Wall clock time and date at job start Tue Mar 31 2020 12:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 C 1.50706 * 109.46542 * 239.99999 * 2 1 3 5 5 H 1.08000 * 119.99782 * 239.99946 * 4 2 1 6 6 C 1.37877 * 119.99808 * 60.00551 * 4 2 1 7 7 N 1.31511 * 120.00521 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99557 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47601 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46700 * 120.00147 * 8 6 4 11 11 H 1.48502 * 109.47057 * 239.99600 * 8 6 4 12 12 C 1.52999 * 109.46935 * 120.00658 * 2 1 3 13 13 N 1.46904 * 109.47013 * 299.99300 * 12 2 1 14 14 C 1.46889 * 111.00140 * 180.02562 * 13 12 2 15 15 C 1.50702 * 109.47584 * 180.02562 * 14 13 12 16 16 C 1.38262 * 119.94294 * 89.99484 * 15 14 13 17 17 C 1.38146 * 120.05821 * 180.02562 * 16 15 14 18 18 C 1.38732 * 119.93975 * 0.02562 * 17 16 15 19 19 O 1.35908 * 120.05592 * 179.97438 * 18 17 16 20 20 C 1.42902 * 116.99297 * 354.35240 * 19 18 17 21 21 H 1.08991 * 110.83692 * 327.41047 * 20 19 18 22 22 C 1.54809 * 110.90200 * 203.75870 * 20 19 18 23 23 C 1.54103 * 104.18980 * 220.92326 * 22 20 19 24 24 O 1.43741 * 107.29141 * 357.97280 * 23 22 20 25 25 C 1.44377 * 106.97616 * 26.51299 * 24 23 22 26 26 C 1.38729 * 119.89042 * 0.27082 * 18 17 16 27 27 C 1.38147 * 119.94160 * 359.46787 * 26 18 17 28 28 H 1.09000 * 109.46575 * 299.99692 * 1 2 3 29 29 H 1.08998 * 109.46762 * 59.99388 * 1 2 3 30 30 H 1.08998 * 109.46883 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46862 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.46984 * 300.00232 * 3 2 1 33 33 H 1.09003 * 109.46791 * 60.00133 * 3 2 1 34 34 H 0.96992 * 120.00786 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46548 * 179.97438 * 12 2 1 36 36 H 1.08993 * 109.47560 * 59.99303 * 12 2 1 37 37 H 1.00897 * 111.00118 * 303.96316 * 13 12 2 38 38 H 1.09001 * 109.47466 * 60.00282 * 14 13 12 39 39 H 1.08999 * 109.47439 * 300.00180 * 14 13 12 40 40 H 1.08003 * 119.97351 * 0.03681 * 16 15 14 41 41 H 1.07999 * 120.02958 * 180.02562 * 17 16 15 42 42 H 1.09002 * 110.48904 * 102.24981 * 22 20 19 43 43 H 1.09001 * 110.49047 * 339.60068 * 22 20 19 44 44 H 1.08997 * 109.87694 * 117.39769 * 23 22 20 45 45 H 1.08994 * 109.87744 * 238.39779 * 23 22 20 46 46 H 1.08999 * 110.62085 * 78.43604 * 25 24 23 47 47 H 1.09006 * 110.62189 * 201.27861 * 25 24 23 48 48 H 1.08004 * 120.03051 * 179.72590 * 26 18 17 49 49 H 1.08002 * 119.97226 * 180.27397 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1481 -2.2857 -3.6040 10 1 1.1675 -1.5864 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 6 2.0400 -0.7214 1.2492 13 7 1.5505 -0.0289 2.4487 14 6 2.0219 -0.6947 3.6702 15 6 1.5004 0.0418 4.8771 16 6 0.2837 -0.3132 5.4297 17 6 -0.1968 0.3607 6.5358 18 6 0.5423 1.3948 7.0917 19 8 0.0715 2.0598 8.1795 20 6 -1.2452 1.7264 8.6238 21 1 -1.8801 1.4505 7.7820 22 6 -1.8689 2.8934 9.4273 23 6 -2.5884 2.2016 10.6014 24 8 -2.4202 0.7843 10.4301 25 6 -1.2021 0.5921 9.6792 26 6 1.7599 1.7531 6.5316 27 6 2.2385 1.0725 5.4288 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.7082 1.1610 -3.4843 35 1 3.1300 -0.7218 1.2489 36 1 1.6767 -1.7490 1.2492 37 1 1.8199 0.9434 2.4402 38 1 3.1118 -0.6942 3.6868 39 1 1.6587 -1.7223 3.6872 40 1 -0.2914 -1.1181 4.9965 41 1 -1.1471 0.0828 6.9673 42 1 -2.5827 3.4415 8.8122 43 1 -1.0907 3.5611 9.7969 44 1 -2.1440 2.5162 11.5456 45 1 -3.6483 2.4556 10.5880 46 1 -0.3313 0.7021 10.3255 47 1 -1.1991 -0.3850 9.1961 48 1 2.3350 2.5607 6.9598 49 1 3.1884 1.3481 4.9951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594945625.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:10 Heat of formation + Delta-G solvation = -75.213812 kcal Electronic energy + Delta-G solvation = -26326.250183 eV Core-core repulsion = 22638.757469 eV Total energy + Delta-G solvation = -3687.492714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.52840 -40.09600 -38.85625 -38.04511 -35.51300 -33.24796 -32.60193 -31.94259 -30.76965 -29.82780 -27.49423 -27.24609 -26.71358 -24.70044 -24.14621 -23.75458 -22.48489 -21.57419 -20.32213 -19.51335 -17.94693 -17.77725 -17.19488 -17.00638 -16.57715 -16.51082 -16.12824 -15.94922 -15.55929 -15.42045 -15.14570 -14.69314 -14.42625 -14.41860 -14.21259 -14.16171 -13.87667 -13.34121 -13.29221 -13.02403 -12.95540 -12.85102 -12.60160 -12.51046 -12.48462 -12.23102 -12.09236 -12.07924 -12.05640 -11.64494 -11.53779 -11.29525 -10.92982 -10.77866 -10.57929 -10.33863 -9.93689 -9.23970 -8.99438 -7.95637 -6.12405 0.38923 0.44257 1.41495 1.44926 1.54223 1.98973 2.46999 2.75107 2.98798 3.26349 3.36346 3.63464 3.66661 3.75854 3.88058 3.96024 4.00901 4.13345 4.15426 4.30362 4.43580 4.51980 4.56934 4.58688 4.65121 4.69439 4.78571 4.79580 4.81076 4.88264 4.90378 4.97963 5.05119 5.11849 5.19140 5.30239 5.31380 5.39442 5.44692 5.55300 5.67608 5.71429 5.73800 5.78403 5.83388 6.18432 6.26539 6.35585 6.41530 6.50698 6.65232 6.97546 7.55100 9.02625 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.002033 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.330761 B =13770.704983 C =13960.184947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.058 3.942 3 C -0.121 4.121 4 C -0.523 4.523 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.089 3.911 13 N -0.683 5.683 14 C 0.102 3.898 15 C -0.119 4.119 16 C -0.066 4.066 17 C -0.209 4.209 18 C 0.114 3.886 19 O -0.308 6.308 20 C 0.044 3.956 21 H 0.096 0.904 22 C -0.150 4.150 23 C 0.044 3.956 24 O -0.391 6.391 25 C 0.028 3.972 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.011 0.989 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.257 0.743 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.338 0.662 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.131 0.869 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.142 0.858 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 3.290 26.016 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.057 3.943 3 C -0.179 4.179 4 C -0.562 4.562 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.040 4.040 13 N -0.315 5.315 14 C -0.027 4.027 15 C -0.119 4.119 16 C -0.085 4.085 17 C -0.228 4.228 18 C 0.069 3.931 19 O -0.223 6.223 20 C -0.013 4.013 21 H 0.113 0.887 22 C -0.187 4.187 23 C -0.032 4.032 24 O -0.311 6.311 25 C -0.049 4.049 26 C -0.175 4.175 27 C -0.097 4.097 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.148 0.852 41 H 0.160 0.840 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.091 0.909 47 H 0.122 0.878 48 H 0.159 0.841 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.075 3.055 26.076 26.568 hybrid contribution 1.225 -0.174 -1.356 1.835 sum -2.850 2.881 24.720 25.050 Atomic orbital electron populations 1.21468 0.97802 0.97758 0.99277 1.18164 0.92877 0.92398 0.90815 1.21662 0.97463 0.98842 0.99909 1.21463 1.30983 1.11849 0.91865 0.93600 1.25557 0.95410 0.95712 1.01238 1.69973 1.37468 1.23709 1.23176 0.85713 0.78024 0.78758 0.80317 1.19584 1.21019 1.20954 1.21838 0.95161 0.97246 0.89734 1.60589 1.63769 1.06369 1.00818 1.20824 0.96996 0.97722 0.87126 1.19792 0.96145 0.98586 0.97409 1.20990 0.94593 0.98864 0.94054 1.21388 1.02056 0.99103 1.00214 1.19114 0.94261 0.92203 0.87537 1.86085 1.32195 1.61102 1.42876 1.24152 0.82586 0.96706 0.97820 0.88655 1.23014 1.01006 0.97454 0.97246 1.23339 1.02437 0.79734 0.97696 1.88902 1.42102 1.24482 1.75581 1.24061 0.88372 0.99633 0.92815 1.20556 0.95588 1.03165 0.98190 1.21051 0.99918 0.94049 0.94641 0.94865 0.93395 0.97017 0.96301 0.92642 0.94911 0.93376 0.97052 0.93109 0.84278 0.94370 0.90588 0.85156 0.84029 0.88068 0.88709 0.90758 0.87695 0.90884 0.87831 0.84064 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.15 8.09 71.99 0.58 -4.57 16 2 C 0.06 2.79 0.57 -52.92 -0.03 2.76 16 3 C -0.12 -5.67 7.92 71.98 0.57 -5.10 16 4 C -0.52 -28.13 8.01 25.60 0.21 -27.93 16 5 H 0.05 2.47 7.74 -2.91 -0.02 2.44 16 6 C 0.02 1.07 5.15 84.65 0.44 1.50 16 7 N -0.90 -50.59 9.35 21.45 0.20 -50.39 16 8 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 C 0.09 3.62 4.59 86.30 0.40 4.01 16 13 N -0.68 -23.37 5.70 -517.96 -2.95 -26.32 16 14 C 0.10 2.82 5.81 85.56 0.50 3.31 16 15 C -0.12 -2.97 5.39 -19.85 -0.11 -3.07 16 16 C -0.07 -1.57 9.69 22.25 0.22 -1.36 16 17 C -0.21 -4.42 8.93 22.37 0.20 -4.22 16 18 C 0.11 2.47 6.68 22.51 0.15 2.62 16 19 O -0.31 -6.08 9.90 -92.51 -0.92 -7.00 16 20 C 0.04 0.68 2.90 31.90 0.09 0.77 16 21 H 0.10 1.44 6.25 -2.39 -0.01 1.43 16 22 C -0.15 -1.68 6.78 31.59 0.21 -1.47 16 23 C 0.04 0.48 7.70 72.36 0.56 1.04 16 24 O -0.39 -6.66 11.52 -148.98 -1.72 -8.38 16 25 C 0.03 0.43 7.31 72.67 0.53 0.96 16 26 C -0.16 -3.38 9.99 22.37 0.22 -3.15 16 27 C -0.08 -1.77 9.69 22.25 0.22 -1.55 16 28 H 0.03 1.49 7.60 -2.39 -0.02 1.47 16 29 H 0.05 2.59 6.07 -2.39 -0.01 2.57 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 33 H 0.03 1.35 6.57 -2.39 -0.02 1.33 16 34 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.34 11.53 6.76 -89.70 -0.61 10.93 16 38 H 0.04 1.00 8.09 -2.39 -0.02 0.99 16 39 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 40 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.14 2.43 5.63 -2.91 -0.02 2.41 16 42 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 1.45 7.78 -2.38 -0.02 1.43 16 48 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 49 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -60.45 384.88 1.91 -58.53 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.32 Total: 23.58 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 4.95 Total: -35.44 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.75 Total: -76.71 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -2.63 Total: -15.37 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -60.45 1.91 -58.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594945625.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.682 kcal (2) G-P(sol) polarization free energy of solvation -60.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds