Wall clock time and date at job start Tue Mar 31 2020 13:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 H 1.09000 * 110.46105 * 54.87529 * 3 2 1 5 5 C 1.54393 * 110.41123 * 292.46515 * 3 2 1 6 6 C 1.54252 * 105.05994 * 217.36704 * 5 3 2 7 7 C 1.54384 * 105.06541 * 0.02562 * 6 5 3 8 8 N 1.48559 * 110.41273 * 177.29625 * 3 2 1 9 9 C 1.46896 * 110.99715 * 277.81509 * 8 3 2 10 10 C 1.52999 * 109.47510 * 164.48967 * 9 8 3 11 11 H 1.09005 * 109.46986 * 59.99777 * 10 9 8 12 12 O 1.42904 * 109.46708 * 300.00354 * 10 9 8 13 13 C 1.53000 * 109.47503 * 180.02562 * 10 9 8 14 14 O 1.42903 * 109.46921 * 184.99943 * 13 10 9 15 15 C 1.35680 * 116.99751 * 180.02562 * 14 13 10 16 16 C 1.39307 * 119.81574 * 179.97438 * 15 14 13 17 17 C 1.36439 * 120.18650 * 179.97438 * 16 15 14 18 18 C 1.40833 * 119.80618 * 0.02562 * 17 16 15 19 19 C 1.41215 * 120.17559 * 179.72676 * 18 17 16 20 20 H 1.08001 * 120.00260 * 330.08676 * 19 18 17 21 21 C 1.39895 * 120.00362 * 150.09450 * 19 18 17 22 22 N 1.30873 * 120.00633 * 161.04917 * 21 19 18 23 23 Si 1.86799 * 119.99490 * 341.04527 * 21 19 18 24 24 H 1.48506 * 109.47049 * 94.86204 * 23 21 19 25 25 H 1.48501 * 109.47332 * 214.85935 * 23 21 19 26 26 H 1.48500 * 109.47521 * 334.86433 * 23 21 19 27 27 C 1.40827 * 119.64548 * 359.97438 * 18 17 16 28 28 C 1.36441 * 119.81312 * 359.96078 * 27 18 17 29 29 H 1.08999 * 109.47075 * 296.80751 * 1 2 3 30 30 H 1.08998 * 109.47149 * 56.81073 * 1 2 3 31 31 H 1.09001 * 109.47113 * 176.81070 * 1 2 3 32 32 H 1.09005 * 109.46851 * 240.00036 * 2 1 3 33 33 H 1.08998 * 109.47228 * 120.00241 * 2 1 3 34 34 H 1.09001 * 110.31814 * 336.26273 * 5 3 2 35 35 H 1.08995 * 110.32048 * 98.47179 * 5 3 2 36 36 H 1.09002 * 110.32216 * 118.89646 * 6 5 3 37 37 H 1.09001 * 110.32500 * 241.00130 * 6 5 3 38 38 H 1.09002 * 110.41216 * 265.07527 * 7 6 5 39 39 H 1.09001 * 110.41544 * 142.62931 * 7 6 5 40 40 H 1.09005 * 109.47178 * 44.48861 * 9 8 3 41 41 H 1.09001 * 109.47561 * 284.49307 * 9 8 3 42 42 H 0.96697 * 114.00191 * 299.99501 * 12 10 9 43 43 H 1.09001 * 109.47168 * 65.00066 * 13 10 9 44 44 H 1.08996 * 109.46903 * 304.99951 * 13 10 9 45 45 H 1.08005 * 119.90863 * 359.97438 * 16 15 14 46 46 H 1.07996 * 120.09520 * 180.02562 * 17 16 15 47 47 H 0.96995 * 120.00487 * 179.97438 * 22 21 19 48 48 H 1.08005 * 120.09765 * 179.97438 * 27 18 17 49 49 H 1.08000 * 119.90633 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6131 1.9976 0.8353 5 6 1.6982 2.1344 -1.3372 6 6 2.9157 3.0290 -1.6482 7 6 3.8911 2.8019 -0.4733 8 7 3.5239 1.4673 0.0657 9 6 3.9923 1.3111 1.4492 10 6 5.4804 0.9556 1.4469 11 1 6.0435 1.7522 0.9604 12 8 5.6765 -0.2686 0.7364 13 6 5.9681 0.7923 2.8879 14 8 7.3805 0.5755 2.8910 15 6 7.9755 0.4095 4.0990 16 6 9.3499 0.1937 4.1704 17 6 9.9561 0.0263 5.3812 18 6 9.1881 0.0716 6.5608 19 6 9.8065 -0.1064 7.8178 20 1 10.6885 -0.7239 7.9031 21 6 9.2767 0.5168 8.9527 22 7 9.5933 0.0824 10.1459 23 14 8.1174 1.9694 8.7648 24 1 6.7125 1.4898 8.8041 25 1 8.3436 2.9301 9.8744 26 1 8.3742 2.6432 7.4666 27 6 7.7992 0.2901 6.4798 28 6 7.2087 0.4570 5.2612 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5625 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5630 1.3921 -2.1238 35 1 0.7996 2.7419 -1.2302 36 1 3.3781 2.7258 -2.5876 37 1 2.6144 4.0755 -1.6957 38 1 3.7541 3.5696 0.2883 39 1 4.9213 2.7982 -0.8296 40 1 3.4292 0.5145 1.9356 41 1 3.8426 2.2449 1.9912 42 1 5.2037 -1.0228 1.1142 43 1 5.4684 -0.0613 3.3460 44 1 5.7377 1.6948 3.4539 45 1 9.9373 0.1589 3.2648 46 1 11.0218 -0.1404 5.4349 47 1 9.2263 0.5148 10.9327 48 1 7.2031 0.3258 7.3798 49 1 6.1438 0.6250 5.1973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609046708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:45 Heat of formation + Delta-G solvation = -76.022997 kcal Electronic energy + Delta-G solvation = -26559.102940 eV Core-core repulsion = 22871.575137 eV Total energy + Delta-G solvation = -3687.527803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -39.85428 -39.04133 -37.35984 -36.10373 -33.81679 -33.35706 -32.61365 -30.43967 -29.84686 -29.26370 -28.02564 -25.72478 -24.36034 -23.37614 -22.43611 -21.47349 -20.85200 -20.45227 -20.08975 -17.50037 -17.40812 -16.81483 -16.33035 -15.94896 -15.74286 -15.21984 -14.83880 -14.66927 -14.62271 -14.18814 -13.91929 -13.59829 -13.44431 -13.19745 -13.16853 -12.66288 -12.54927 -12.42149 -12.31918 -12.07047 -11.86603 -11.80832 -11.56387 -11.44787 -11.35567 -11.14701 -10.88340 -10.82893 -10.82390 -10.70568 -10.37240 -10.12745 -9.98166 -9.90980 -9.50328 -9.06776 -8.72663 -7.93125 -7.19123 -6.92326 -4.38423 2.53985 2.62963 3.08292 3.19108 3.30359 3.34989 3.95758 3.98092 4.24412 4.35733 4.45532 4.49013 4.65439 4.76194 4.82971 4.91318 4.98566 5.01275 5.07282 5.14413 5.18748 5.21755 5.31570 5.38064 5.40146 5.47132 5.52373 5.53000 5.64103 5.71014 5.74067 5.82247 5.84334 5.90886 5.95076 5.97243 6.00590 6.40963 6.59562 6.62358 6.71479 6.78570 6.96911 7.16479 7.42296 7.52458 7.73563 7.79692 7.93968 8.29224 8.40008 8.68788 8.82652 10.10973 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002395 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.130364 B =11688.517985 C =12111.902749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.109 4.109 3 C 0.060 3.940 4 H 0.050 0.950 5 C -0.118 4.118 6 C -0.125 4.125 7 C 0.030 3.970 8 N -0.493 5.493 9 C 0.014 3.986 10 C 0.122 3.878 11 H 0.102 0.898 12 O -0.537 6.537 13 C 0.036 3.964 14 O -0.315 6.315 15 C -0.008 4.008 16 C -0.101 4.101 17 C -0.177 4.177 18 C 0.071 3.929 19 C -0.450 4.450 20 H 0.090 0.910 21 C 0.084 3.916 22 N -0.813 5.813 23 Si 0.908 3.092 24 H -0.272 1.272 25 H -0.291 1.291 26 H -0.246 1.246 27 C -0.209 4.209 28 C -0.153 4.153 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.369 0.631 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.284 0.716 48 H 0.103 0.897 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 4.682 -18.408 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.048 4.048 4 H 0.068 0.932 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.098 4.098 8 N -0.217 5.217 9 C -0.115 4.115 10 C 0.062 3.938 11 H 0.120 0.880 12 O -0.341 6.341 13 C -0.042 4.042 14 O -0.230 6.230 15 C -0.052 4.052 16 C -0.120 4.120 17 C -0.196 4.196 18 C 0.068 3.932 19 C -0.479 4.479 20 H 0.108 0.892 21 C -0.134 4.134 22 N -0.438 5.438 23 Si 0.735 3.265 24 H -0.198 1.198 25 H -0.218 1.218 26 H -0.170 1.170 27 C -0.229 4.229 28 C -0.172 4.172 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.215 0.785 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.122 0.878 46 H 0.127 0.873 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.855 4.612 -18.970 25.792 hybrid contribution -1.454 1.034 1.451 2.300 sum -18.310 5.647 -17.519 25.963 Atomic orbital electron populations 1.21776 0.95697 1.01805 1.01712 1.21447 0.95097 0.95262 1.02836 1.22721 0.88199 0.96660 0.97205 0.93244 1.22344 0.97662 0.98650 0.96952 1.22284 0.95690 0.99466 0.98826 1.23190 1.00457 0.89598 0.96586 1.65226 1.08891 1.29253 1.18330 1.22915 0.96852 1.01577 0.90173 1.21749 0.93032 0.88664 0.90358 0.87981 1.86638 1.73924 1.17834 1.55696 1.23188 0.82959 1.00644 0.97374 1.85895 1.19749 1.89027 1.28344 1.18563 0.92478 1.11273 0.82845 1.19773 0.91165 1.03487 0.97553 1.20683 0.98451 1.08988 0.91505 1.17726 0.91023 0.90873 0.93596 1.19366 1.12170 1.26684 0.89687 0.89180 1.26105 0.94954 0.97853 0.94497 1.69723 1.38230 1.36622 0.99189 0.86367 0.79879 0.81116 0.79143 1.19849 1.21797 1.16953 1.20643 0.95070 1.11487 0.95662 1.20480 0.97679 1.06038 0.93033 0.92978 0.92596 0.92498 0.90966 0.92037 0.90802 0.91556 0.90913 0.91473 0.93871 0.89762 0.90227 0.93302 0.78487 0.92763 0.92563 0.87768 0.87309 0.90611 0.87959 0.88481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.81 37.16 0.36 -0.58 16 2 C -0.11 -0.82 5.56 -26.73 -0.15 -0.97 16 3 C 0.06 0.49 2.28 -66.07 -0.15 0.34 16 4 H 0.05 0.41 8.00 -51.93 -0.42 -0.01 16 5 C -0.12 -0.83 5.68 -25.35 -0.14 -0.97 16 6 C -0.12 -0.91 7.00 -25.35 -0.18 -1.09 16 7 C 0.03 0.26 6.12 -2.19 -0.01 0.25 16 8 N -0.49 -4.77 4.85 -222.15 -1.08 -5.85 16 9 C 0.01 0.14 4.48 -3.83 -0.02 0.12 16 10 C 0.12 1.51 3.37 -26.73 -0.09 1.42 16 11 H 0.10 1.35 7.78 -51.93 -0.40 0.95 16 12 O -0.54 -7.27 13.17 -40.10 -0.53 -7.80 16 13 C 0.04 0.52 4.36 37.16 0.16 0.69 16 14 O -0.31 -6.12 10.09 -23.61 -0.24 -6.36 16 15 C -0.01 -0.18 6.71 -38.79 -0.26 -0.44 16 16 C -0.10 -2.23 9.92 -39.83 -0.40 -2.63 16 17 C -0.18 -4.16 9.74 -39.25 -0.38 -4.54 16 18 C 0.07 1.81 5.09 -106.81 -0.54 1.27 16 19 C -0.45 -12.26 9.55 -37.83 -0.36 -12.62 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.22 5.39 -17.34 -0.09 2.12 16 22 N -0.81 -21.84 13.93 55.54 0.77 -21.07 16 23 Si 0.91 20.92 24.55 -169.99 -4.17 16.74 16 24 H -0.27 -6.06 6.68 56.52 0.38 -5.68 16 25 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.25 -5.83 6.94 56.52 0.39 -5.44 16 27 C -0.21 -5.09 7.18 -39.25 -0.28 -5.37 16 28 C -0.15 -3.37 8.96 -39.83 -0.36 -3.72 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 7.43 -51.93 -0.39 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 33 H 0.06 0.49 7.22 -51.93 -0.37 0.11 16 34 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.04 0.37 7.68 -51.93 -0.40 -0.03 16 39 H 0.08 0.80 8.01 -51.93 -0.42 0.39 16 40 H 0.08 0.72 7.05 -51.93 -0.37 0.35 16 41 H 0.05 0.46 7.64 -51.93 -0.40 0.06 16 42 H 0.37 3.85 9.04 45.56 0.41 4.26 16 43 H 0.05 0.75 7.65 -51.93 -0.40 0.36 16 44 H 0.06 0.80 7.64 -51.93 -0.40 0.40 16 45 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 46 H 0.11 2.38 8.06 -52.49 -0.42 1.95 16 47 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 48 H 0.10 2.47 4.79 -52.48 -0.25 2.22 16 49 H 0.10 1.84 6.27 -52.49 -0.33 1.51 16 LS Contribution 383.69 15.07 5.78 5.78 Total: -1.00 -29.61 383.69 -9.84 -39.45 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.49 Total: 5.83 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.89 Total: -26.73 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: -0.30 Total: -26.92 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.77 Total: -14.16 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.61 -9.84 -39.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609046708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.570 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds