Wall clock time and date at job start Tue Mar 31 2020 13:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47278 * 2 1 4 4 H 1.09000 * 110.46105 * 54.87529 * 3 2 1 5 5 C 1.54393 * 110.41123 * 292.46515 * 3 2 1 6 6 C 1.54252 * 105.05994 * 217.36704 * 5 3 2 7 7 C 1.54384 * 105.06541 * 0.02562 * 6 5 3 8 8 N 1.48559 * 110.41273 * 177.29625 * 3 2 1 9 9 C 1.46896 * 110.99715 * 277.81509 * 8 3 2 10 10 C 1.52999 * 109.47510 * 164.48967 * 9 8 3 11 11 H 1.09005 * 109.46986 * 59.99777 * 10 9 8 12 12 O 1.42904 * 109.46708 * 300.00354 * 10 9 8 13 13 C 1.53000 * 109.47503 * 180.02562 * 10 9 8 14 14 O 1.42903 * 109.46921 * 184.99943 * 13 10 9 15 15 C 1.35680 * 116.99751 * 180.02562 * 14 13 10 16 16 C 1.39307 * 119.81574 * 179.97438 * 15 14 13 17 17 C 1.36439 * 120.18650 * 179.97438 * 16 15 14 18 18 C 1.40833 * 119.80618 * 0.02562 * 17 16 15 19 19 C 1.41215 * 120.17559 * 179.72676 * 18 17 16 20 20 H 1.08001 * 120.00260 * 330.08676 * 19 18 17 21 21 C 1.39895 * 120.00362 * 150.09450 * 19 18 17 22 22 N 1.30873 * 120.00633 * 161.04917 * 21 19 18 23 23 Si 1.86799 * 119.99490 * 341.04527 * 21 19 18 24 24 H 1.48506 * 109.47049 * 94.86204 * 23 21 19 25 25 H 1.48501 * 109.47332 * 214.85935 * 23 21 19 26 26 H 1.48500 * 109.47521 * 334.86433 * 23 21 19 27 27 C 1.40827 * 119.64548 * 359.97438 * 18 17 16 28 28 C 1.36441 * 119.81312 * 359.96078 * 27 18 17 29 29 H 1.08999 * 109.47075 * 296.80751 * 1 2 3 30 30 H 1.08998 * 109.47149 * 56.81073 * 1 2 3 31 31 H 1.09001 * 109.47113 * 176.81070 * 1 2 3 32 32 H 1.09005 * 109.46851 * 240.00036 * 2 1 3 33 33 H 1.08998 * 109.47228 * 120.00241 * 2 1 3 34 34 H 1.09001 * 110.31814 * 336.26273 * 5 3 2 35 35 H 1.08995 * 110.32048 * 98.47179 * 5 3 2 36 36 H 1.09002 * 110.32216 * 118.89646 * 6 5 3 37 37 H 1.09001 * 110.32500 * 241.00130 * 6 5 3 38 38 H 1.09002 * 110.41216 * 265.07527 * 7 6 5 39 39 H 1.09001 * 110.41544 * 142.62931 * 7 6 5 40 40 H 1.09005 * 109.47178 * 44.48861 * 9 8 3 41 41 H 1.09001 * 109.47561 * 284.49307 * 9 8 3 42 42 H 0.96697 * 114.00191 * 299.99501 * 12 10 9 43 43 H 1.09001 * 109.47168 * 65.00066 * 13 10 9 44 44 H 1.08996 * 109.46903 * 304.99951 * 13 10 9 45 45 H 1.08005 * 119.90863 * 359.97438 * 16 15 14 46 46 H 1.07996 * 120.09520 * 180.02562 * 17 16 15 47 47 H 0.96995 * 120.00487 * 179.97438 * 22 21 19 48 48 H 1.08005 * 120.09765 * 179.97438 * 27 18 17 49 49 H 1.08000 * 119.90633 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6131 1.9976 0.8353 5 6 1.6982 2.1344 -1.3372 6 6 2.9157 3.0290 -1.6482 7 6 3.8911 2.8019 -0.4733 8 7 3.5239 1.4673 0.0657 9 6 3.9923 1.3111 1.4492 10 6 5.4804 0.9556 1.4469 11 1 6.0435 1.7522 0.9604 12 8 5.6765 -0.2686 0.7364 13 6 5.9681 0.7923 2.8879 14 8 7.3805 0.5755 2.8910 15 6 7.9755 0.4095 4.0990 16 6 9.3499 0.1937 4.1704 17 6 9.9561 0.0263 5.3812 18 6 9.1881 0.0716 6.5608 19 6 9.8065 -0.1064 7.8178 20 1 10.6885 -0.7239 7.9031 21 6 9.2767 0.5168 8.9527 22 7 9.5933 0.0824 10.1459 23 14 8.1174 1.9694 8.7648 24 1 6.7125 1.4898 8.8041 25 1 8.3436 2.9301 9.8744 26 1 8.3742 2.6432 7.4666 27 6 7.7992 0.2901 6.4798 28 6 7.2087 0.4570 5.2612 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5625 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5630 1.3921 -2.1238 35 1 0.7996 2.7419 -1.2302 36 1 3.3781 2.7258 -2.5876 37 1 2.6144 4.0755 -1.6957 38 1 3.7541 3.5696 0.2883 39 1 4.9213 2.7982 -0.8296 40 1 3.4292 0.5145 1.9356 41 1 3.8426 2.2449 1.9912 42 1 5.2037 -1.0228 1.1142 43 1 5.4684 -0.0613 3.3460 44 1 5.7377 1.6948 3.4539 45 1 9.9373 0.1589 3.2648 46 1 11.0218 -0.1404 5.4349 47 1 9.2263 0.5148 10.9327 48 1 7.2031 0.3258 7.3798 49 1 6.1438 0.6250 5.1973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609046708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:43 Heat of formation + Delta-G solvation = -95.355177 kcal Electronic energy + Delta-G solvation = -26559.941247 eV Core-core repulsion = 22871.575137 eV Total energy + Delta-G solvation = -3688.366109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -40.88678 -40.30903 -38.71253 -37.48094 -35.26535 -34.42308 -33.35285 -32.06563 -31.62434 -30.50884 -28.59915 -27.00354 -25.90582 -24.05078 -23.67123 -22.90138 -22.05380 -21.62266 -20.76723 -19.40298 -18.96728 -17.94826 -17.41209 -17.01495 -16.63733 -16.52499 -16.06608 -15.75277 -15.68661 -15.35809 -15.15630 -15.01324 -14.68705 -14.40727 -14.27795 -13.98675 -13.93265 -13.64332 -13.47263 -13.17000 -12.91691 -12.74833 -12.65162 -12.50601 -12.24612 -12.16079 -12.10519 -12.01007 -11.93484 -11.77278 -11.65148 -11.40348 -11.32411 -11.27681 -10.99584 -10.87506 -9.73839 -9.42453 -9.02050 -8.87513 -6.39063 0.72188 0.78095 1.23985 1.38171 1.47592 2.11880 2.28402 2.57594 3.01946 3.45131 3.52205 3.62423 3.71110 3.92435 3.96485 4.05402 4.10283 4.15295 4.20438 4.21806 4.29429 4.39140 4.39821 4.43831 4.54700 4.60228 4.65264 4.66312 4.74340 4.82245 4.90805 4.97388 4.98193 5.01669 5.05282 5.15603 5.18535 5.21787 5.26923 5.32330 5.36027 5.43613 5.58725 5.70008 5.85935 5.94286 6.03541 6.11199 6.31331 6.58042 6.79866 6.87350 6.92732 8.21728 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.002395 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.130364 B =11688.517985 C =12111.902749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.060 3.940 4 H 0.051 0.949 5 C -0.116 4.116 6 C -0.123 4.123 7 C 0.026 3.974 8 N -0.508 5.508 9 C 0.022 3.978 10 C 0.132 3.868 11 H 0.090 0.910 12 O -0.556 6.556 13 C 0.027 3.973 14 O -0.325 6.325 15 C 0.013 3.987 16 C -0.111 4.111 17 C -0.181 4.181 18 C 0.046 3.954 19 C -0.485 4.485 20 H 0.056 0.944 21 C 0.046 3.954 22 N -0.854 5.854 23 Si 0.962 3.038 24 H -0.256 1.256 25 H -0.277 1.277 26 H -0.256 1.256 27 C -0.215 4.215 28 C -0.158 4.158 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.382 0.618 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.115 0.885 47 H 0.292 0.708 48 H 0.103 0.897 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 5.891 -20.255 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.047 4.047 4 H 0.069 0.931 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.102 4.102 8 N -0.232 5.232 9 C -0.107 4.107 10 C 0.072 3.928 11 H 0.108 0.892 12 O -0.362 6.362 13 C -0.049 4.049 14 O -0.240 6.240 15 C -0.032 4.032 16 C -0.129 4.129 17 C -0.200 4.200 18 C 0.043 3.957 19 C -0.516 4.516 20 H 0.075 0.925 21 C -0.167 4.167 22 N -0.481 5.481 23 Si 0.785 3.215 24 H -0.181 1.181 25 H -0.203 1.203 26 H -0.180 1.180 27 C -0.235 4.235 28 C -0.176 4.176 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.145 0.855 46 H 0.133 0.867 47 H 0.102 0.898 48 H 0.120 0.880 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.778 5.809 -20.829 29.304 hybrid contribution -0.590 0.604 1.741 1.935 sum -20.367 6.413 -19.088 28.641 Atomic orbital electron populations 1.21746 0.94620 1.02171 1.02100 1.21417 0.95997 0.94824 1.02126 1.22768 0.87124 0.97040 0.97816 0.93058 1.22351 0.98027 0.98669 0.96331 1.22284 0.95418 1.00366 0.97996 1.23219 1.00257 0.89468 0.97280 1.65191 1.10046 1.29785 1.18164 1.22789 0.94931 1.02274 0.90688 1.21661 0.94539 0.88050 0.88583 0.89156 1.86606 1.74557 1.18744 1.56294 1.23562 0.80303 1.01734 0.99346 1.85911 1.22640 1.88517 1.26955 1.18751 0.92523 1.08089 0.83796 1.20044 0.92009 1.03118 0.97776 1.20856 0.98978 1.08530 0.91675 1.17873 0.92091 0.92202 0.93485 1.19340 1.12307 1.28455 0.91451 0.92549 1.26772 0.96384 0.99648 0.93938 1.69751 1.40208 1.38212 0.99923 0.85544 0.78837 0.78285 0.78798 1.18130 1.20349 1.18015 1.20759 0.94468 1.11436 0.96806 1.20773 0.99529 1.05330 0.91991 0.92754 0.91988 0.92221 0.91908 0.92491 0.90883 0.90191 0.91239 0.90174 0.93475 0.90952 0.89159 0.92543 0.77021 0.91352 0.91358 0.85522 0.86741 0.89751 0.87960 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.81 71.98 0.71 -0.79 16 2 C -0.11 -1.37 5.56 30.59 0.17 -1.20 16 3 C 0.06 0.83 2.28 45.07 0.10 0.93 16 4 H 0.05 0.70 8.00 -2.39 -0.02 0.68 16 5 C -0.12 -1.35 5.68 31.49 0.18 -1.17 16 6 C -0.12 -1.54 7.00 31.49 0.22 -1.32 16 7 C 0.03 0.41 6.12 86.46 0.53 0.94 16 8 N -0.51 -8.72 4.85 -856.74 -4.16 -12.87 16 9 C 0.02 0.37 4.48 86.30 0.39 0.76 16 10 C 0.13 2.93 3.37 30.59 0.10 3.03 16 11 H 0.09 2.23 7.78 -2.38 -0.02 2.21 16 12 O -0.56 -13.86 13.17 -144.32 -1.90 -15.76 16 13 C 0.03 0.70 4.36 71.98 0.31 1.01 16 14 O -0.32 -11.64 10.09 -85.32 -0.86 -12.50 16 15 C 0.01 0.51 6.71 22.79 0.15 0.66 16 16 C -0.11 -4.71 9.92 22.11 0.22 -4.49 16 17 C -0.18 -8.51 9.74 22.48 0.22 -8.29 16 18 C 0.05 2.37 5.09 -21.28 -0.11 2.26 16 19 C -0.49 -27.55 9.55 23.40 0.22 -27.33 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 21 C 0.05 2.50 5.39 85.24 0.46 2.96 16 22 N -0.85 -47.32 13.93 21.82 0.30 -47.02 16 23 Si 0.96 42.82 24.55 68.60 1.68 44.51 16 24 H -0.26 -10.62 6.68 99.48 0.66 -9.96 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 26 H -0.26 -11.70 6.94 99.48 0.69 -11.01 16 27 C -0.22 -10.20 7.18 22.48 0.16 -10.03 16 28 C -0.16 -6.46 8.96 22.11 0.20 -6.26 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.55 7.43 -2.39 -0.02 0.53 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.93 8.03 -2.38 -0.02 0.91 16 33 H 0.06 0.78 7.22 -2.39 -0.02 0.76 16 34 H 0.07 0.87 7.78 -2.39 -0.02 0.85 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.70 7.68 -2.39 -0.02 0.69 16 39 H 0.07 1.30 8.01 -2.39 -0.02 1.28 16 40 H 0.09 1.33 7.05 -2.38 -0.02 1.31 16 41 H 0.06 0.88 7.64 -2.39 -0.02 0.86 16 42 H 0.38 7.06 9.04 -74.06 -0.67 6.39 16 43 H 0.07 1.62 7.65 -2.39 -0.02 1.60 16 44 H 0.07 1.65 7.64 -2.39 -0.02 1.64 16 45 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 46 H 0.11 5.10 8.06 -2.91 -0.02 5.07 16 47 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 48 H 0.10 4.79 4.79 -2.91 -0.01 4.78 16 49 H 0.13 4.42 6.27 -2.91 -0.02 4.40 16 Total: -1.00 -64.02 383.69 -0.49 -64.50 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.20 Total: 27.47 kcal Atomic # 6 Polarization: -52.56 SS G_CDS: 4.24 Total: -48.32 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -3.85 Total: -59.89 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -2.76 Total: -28.26 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.68 Total: 44.51 kcal Total: -64.02 -0.49 -64.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609046708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.851 kcal (2) G-P(sol) polarization free energy of solvation -64.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds