Wall clock time and date at job start Tue Mar 31 2020 14:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47095 * 2 1 4 4 H 1.08995 * 109.47102 * 54.60103 * 3 2 1 5 5 C 1.52997 * 109.47064 * 294.60069 * 3 2 1 6 6 C 1.53005 * 109.47076 * 174.60292 * 3 2 1 7 7 H 1.08994 * 109.47042 * 302.09986 * 6 3 2 8 8 O 1.42901 * 109.46875 * 62.09783 * 6 3 2 9 9 C 1.42896 * 114.00287 * 265.25744 * 8 6 3 10 10 C 1.50694 * 109.47155 * 182.10020 * 6 3 2 11 11 O 1.21290 * 120.00147 * 247.67777 * 10 6 3 12 12 N 1.34776 * 120.00209 * 67.68069 * 10 6 3 13 13 C 1.46504 * 119.99847 * 5.94832 * 12 10 6 14 14 C 1.50695 * 109.47036 * 93.33178 * 13 12 10 15 15 H 1.07996 * 120.00051 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00205 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99898 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47267 * 89.99715 * 18 16 14 20 20 H 1.48503 * 109.47294 * 210.00070 * 18 16 14 21 21 H 1.48502 * 109.47419 * 329.99630 * 18 16 14 22 22 C 1.39924 * 120.00177 * 185.95201 * 12 10 6 23 23 C 1.38874 * 120.07272 * 6.82446 * 22 12 10 24 24 C 1.38112 * 119.93004 * 179.79305 * 23 22 12 25 25 C 1.38278 * 120.07007 * 0.48457 * 24 23 22 26 26 C 1.50702 * 119.92825 * 179.76834 * 25 24 23 27 27 C 1.38285 * 120.13938 * 359.74378 * 25 24 23 28 28 C 1.38109 * 120.07324 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.47321 * 59.99614 * 1 2 3 30 30 H 1.08996 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46797 * 300.00111 * 1 2 3 32 32 H 1.09003 * 109.47169 * 240.00279 * 2 1 3 33 33 H 1.08996 * 109.47054 * 120.00194 * 2 1 3 34 34 H 1.09001 * 109.47842 * 300.00154 * 5 3 2 35 35 H 1.08996 * 109.47308 * 60.00264 * 5 3 2 36 36 H 1.09005 * 109.47084 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47440 * 304.96839 * 9 8 6 38 38 H 1.09002 * 109.46614 * 64.96812 * 9 8 6 39 39 H 1.08998 * 109.47018 * 184.96431 * 9 8 6 40 40 H 1.09001 * 109.47048 * 213.33804 * 13 12 10 41 41 H 1.09004 * 109.46929 * 333.33244 * 13 12 10 42 42 H 0.96998 * 120.00142 * 179.97438 * 17 16 14 43 43 H 1.08008 * 120.03025 * 0.02562 * 23 22 12 44 44 H 1.07999 * 119.96022 * 180.22753 * 24 23 22 45 45 H 1.09002 * 109.46967 * 269.97468 * 26 25 24 46 46 H 1.09000 * 109.47288 * 29.97753 * 26 25 24 47 47 H 1.09003 * 109.46826 * 149.97773 * 26 25 24 48 48 H 1.08010 * 119.95879 * 180.02562 * 27 25 24 49 49 H 1.08001 * 120.03462 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8376 5 6 1.6439 2.1235 -1.3115 6 6 3.5640 1.4446 0.1357 7 1 3.8479 0.9266 1.0517 8 8 4.1431 0.7778 -0.9877 9 6 4.4217 -0.6055 -0.7624 10 6 4.0617 2.8661 0.1876 11 8 4.7231 3.3108 -0.7267 12 7 3.7721 3.6432 1.2499 13 6 3.0866 3.0705 2.4112 14 6 4.1065 2.6228 3.4261 15 1 5.1600 2.7523 3.2264 16 6 3.6949 2.0489 4.6102 17 7 4.5850 1.6586 5.4962 18 14 1.8728 1.8256 4.9560 19 1 1.4313 0.5016 4.4488 20 1 1.6340 1.8997 6.4198 21 1 1.1044 2.8981 4.2743 22 6 4.1259 4.9969 1.2437 23 6 4.6461 5.5750 0.0931 24 6 4.9904 6.9125 0.0890 25 6 4.8269 7.6735 1.2319 26 6 5.2085 9.1314 1.2254 27 6 4.3136 7.0998 2.3807 28 6 3.9630 5.7640 2.3899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0839 1.5826 -2.1493 35 1 0.5582 2.1220 -1.4082 36 1 2.0076 3.1511 -1.3117 37 1 5.0517 -0.7102 0.1208 38 1 3.4866 -1.1438 -0.6076 39 1 4.9390 -1.0178 -1.6287 40 1 2.4364 3.8233 2.8570 41 1 2.4889 2.2155 2.0951 42 1 4.2954 1.2552 6.3294 43 1 4.7778 4.9801 -0.7986 44 1 5.3915 7.3634 -0.8066 45 1 6.2514 9.2354 1.5251 46 1 5.0765 9.5371 0.2224 47 1 4.5737 9.6763 1.9242 48 1 4.1868 7.6970 3.2716 49 1 3.5618 5.3166 3.2873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793255618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:06 Heat of formation + Delta-G solvation = -46.208009 kcal Electronic energy + Delta-G solvation = -28713.419171 eV Core-core repulsion = 25027.184243 eV Total energy + Delta-G solvation = -3686.234928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -40.61130 -38.77666 -37.39358 -35.72885 -34.98507 -32.81832 -31.70453 -30.37301 -30.21639 -28.26919 -27.59670 -26.37415 -25.59406 -23.72175 -23.07469 -21.81012 -21.01952 -20.05815 -19.14110 -17.21551 -16.99650 -16.45605 -16.24518 -15.71230 -15.16853 -14.86010 -14.62244 -14.43174 -14.03127 -13.75786 -13.56376 -13.54760 -13.33614 -13.26379 -12.97919 -12.76380 -12.51399 -12.14310 -12.02740 -12.00307 -11.89139 -11.74330 -11.49743 -11.44100 -11.17683 -11.06462 -10.92446 -10.78231 -10.61397 -10.56465 -10.37513 -10.27685 -9.80054 -9.46565 -9.15045 -8.85738 -8.59711 -8.34974 -7.12286 -6.33695 -4.37444 1.80554 1.99786 3.05802 3.09305 3.14260 3.15527 3.26193 4.13609 4.22038 4.41024 4.70304 4.88023 4.94876 5.01338 5.17403 5.30902 5.34427 5.39080 5.48806 5.51484 5.58256 5.60390 5.65115 5.66704 5.74063 5.82066 5.83510 5.84962 5.94837 5.98930 6.08647 6.09831 6.11351 6.16351 6.17796 6.22340 6.35152 6.41599 6.48650 6.53549 6.65279 6.90277 6.93539 7.12237 7.20252 7.24870 7.31335 7.75834 7.90253 8.24537 8.64282 8.74623 9.22739 10.78477 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.005943 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.279000 B = 4710.591143 C = 6432.075214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.115 4.115 4 H 0.092 0.908 5 C -0.141 4.141 6 C 0.079 3.921 7 H 0.103 0.897 8 O -0.357 6.357 9 C 0.020 3.980 10 C 0.524 3.476 11 O -0.519 6.519 12 N -0.528 5.528 13 C 0.190 3.810 14 C -0.546 4.546 15 H 0.081 0.919 16 C 0.082 3.918 17 N -0.883 5.883 18 Si 0.862 3.138 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.167 3.833 23 C -0.170 4.170 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.104 4.104 27 C -0.103 4.103 28 C -0.139 4.139 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.269 0.731 43 H 0.173 0.827 44 H 0.115 0.885 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.296 1.681 -9.231 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.198 4.198 6 C 0.018 3.982 7 H 0.121 0.879 8 O -0.274 6.274 9 C -0.076 4.076 10 C 0.314 3.686 11 O -0.397 6.397 12 N -0.248 5.248 13 C 0.070 3.930 14 C -0.584 4.584 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.520 5.520 18 Si 0.688 3.312 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.186 1.186 22 C 0.072 3.928 23 C -0.189 4.189 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.161 4.161 27 C -0.121 4.121 28 C -0.159 4.159 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.189 0.811 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.135 0.865 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.914 1.800 -9.689 11.494 hybrid contribution -0.847 -0.440 1.006 1.387 sum -6.761 1.360 -8.684 11.089 Atomic orbital electron populations 1.21813 0.95683 1.01436 1.02001 1.21718 0.96171 0.95824 1.02328 1.21829 0.93513 0.97781 1.00215 0.89018 1.21764 1.00583 1.00471 0.96995 1.21993 0.93047 0.91643 0.91529 0.87932 1.87939 1.82038 1.22103 1.35353 1.23061 1.00102 0.82468 1.02013 1.20376 0.79453 0.87451 0.81354 1.90339 1.38290 1.72888 1.38166 1.45544 1.54762 1.06957 1.17568 1.20293 0.94040 0.94888 0.83770 1.21264 0.94655 1.41473 1.01006 0.90095 1.24827 0.97392 0.94493 0.95584 1.69878 1.33667 1.39831 1.08596 0.87050 0.85863 0.79594 0.78677 1.19474 1.20516 1.18632 1.17982 0.97373 0.83063 0.94427 1.22469 1.00921 0.95634 0.99902 1.20871 1.00541 0.93728 0.97348 1.19781 1.02791 0.96002 0.94460 1.20666 1.01098 0.92542 1.01786 1.20729 0.99680 0.94444 0.97292 1.21059 1.03365 0.93892 0.97592 0.92434 0.92844 0.92681 0.91091 0.91635 0.91685 0.92623 0.92912 0.93561 0.93317 0.89745 0.93958 0.93608 0.92131 0.81105 0.86729 0.91969 0.92277 0.92212 0.86459 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.68 37.16 0.36 -1.33 16 2 C -0.12 -1.57 4.08 -26.73 -0.11 -1.68 16 3 C -0.11 -1.74 1.86 -90.62 -0.17 -1.91 16 4 H 0.09 1.46 5.55 -51.93 -0.29 1.18 16 5 C -0.14 -2.02 8.57 37.16 0.32 -1.70 16 6 C 0.08 1.41 1.60 -27.88 -0.04 1.37 16 7 H 0.10 1.93 7.13 -51.93 -0.37 1.56 16 8 O -0.36 -6.12 8.95 -55.02 -0.49 -6.62 16 9 C 0.02 0.27 10.42 101.05 1.05 1.32 16 10 C 0.52 10.87 5.78 -10.99 -0.06 10.81 16 11 O -0.52 -11.59 13.01 -14.24 -0.19 -11.78 16 12 N -0.53 -11.16 2.68 -114.74 -0.31 -11.47 16 13 C 0.19 4.10 2.99 -5.19 -0.02 4.08 16 14 C -0.55 -13.98 9.54 -34.44 -0.33 -14.31 16 15 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 17 N -0.88 -24.87 13.96 55.43 0.77 -24.10 16 18 Si 0.86 18.77 27.47 -169.99 -4.67 14.10 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 22 C 0.17 3.48 6.48 -83.69 -0.54 2.93 16 23 C -0.17 -3.33 8.98 -39.39 -0.35 -3.69 16 24 C -0.11 -1.80 9.69 -39.61 -0.38 -2.18 16 25 C -0.13 -2.06 5.88 -104.59 -0.62 -2.68 16 26 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 27 C -0.10 -1.75 9.69 -39.61 -0.38 -2.13 16 28 C -0.14 -2.73 9.08 -39.39 -0.36 -3.09 16 29 H 0.06 0.59 6.58 -51.93 -0.34 0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.84 6.17 -51.93 -0.32 0.52 16 33 H 0.06 0.86 8.13 -51.93 -0.42 0.43 16 34 H 0.06 0.94 7.63 -51.93 -0.40 0.54 16 35 H 0.05 0.68 6.58 -51.93 -0.34 0.34 16 36 H 0.05 0.85 7.28 -51.93 -0.38 0.47 16 37 H 0.05 0.63 7.98 -51.93 -0.41 0.21 16 38 H 0.05 0.56 5.30 -51.93 -0.28 0.28 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.90 5.78 -51.93 -0.30 0.60 16 41 H 0.05 0.92 3.59 -51.93 -0.19 0.74 16 42 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.17 3.55 4.69 -55.34 -0.26 3.29 16 44 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 48 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 49 H 0.14 2.81 6.19 -52.49 -0.33 2.48 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -29.46 376.42 -8.17 -37.63 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.58 Total: 9.63 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.37 Total: -13.07 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.47 Total: -35.57 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.68 Total: -18.39 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.46 -8.17 -37.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793255618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.577 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds