Wall clock time and date at job start Tue Mar 31 2020 14:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47095 * 2 1 4 4 H 1.08995 * 109.47102 * 54.60103 * 3 2 1 5 5 C 1.52997 * 109.47064 * 294.60069 * 3 2 1 6 6 C 1.53005 * 109.47076 * 174.60292 * 3 2 1 7 7 H 1.08994 * 109.47042 * 302.09986 * 6 3 2 8 8 O 1.42901 * 109.46875 * 62.09783 * 6 3 2 9 9 C 1.42896 * 114.00287 * 265.25744 * 8 6 3 10 10 C 1.50694 * 109.47155 * 182.10020 * 6 3 2 11 11 O 1.21290 * 120.00147 * 247.67777 * 10 6 3 12 12 N 1.34776 * 120.00209 * 67.68069 * 10 6 3 13 13 C 1.46504 * 119.99847 * 5.94832 * 12 10 6 14 14 C 1.50695 * 109.47036 * 93.33178 * 13 12 10 15 15 H 1.07996 * 120.00051 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00101 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00205 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99898 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47267 * 89.99715 * 18 16 14 20 20 H 1.48503 * 109.47294 * 210.00070 * 18 16 14 21 21 H 1.48502 * 109.47419 * 329.99630 * 18 16 14 22 22 C 1.39924 * 120.00177 * 185.95201 * 12 10 6 23 23 C 1.38874 * 120.07272 * 6.82446 * 22 12 10 24 24 C 1.38112 * 119.93004 * 179.79305 * 23 22 12 25 25 C 1.38278 * 120.07007 * 0.48457 * 24 23 22 26 26 C 1.50702 * 119.92825 * 179.76834 * 25 24 23 27 27 C 1.38285 * 120.13938 * 359.74378 * 25 24 23 28 28 C 1.38109 * 120.07324 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.47321 * 59.99614 * 1 2 3 30 30 H 1.08996 * 109.47002 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46797 * 300.00111 * 1 2 3 32 32 H 1.09003 * 109.47169 * 240.00279 * 2 1 3 33 33 H 1.08996 * 109.47054 * 120.00194 * 2 1 3 34 34 H 1.09001 * 109.47842 * 300.00154 * 5 3 2 35 35 H 1.08996 * 109.47308 * 60.00264 * 5 3 2 36 36 H 1.09005 * 109.47084 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47440 * 304.96839 * 9 8 6 38 38 H 1.09002 * 109.46614 * 64.96812 * 9 8 6 39 39 H 1.08998 * 109.47018 * 184.96431 * 9 8 6 40 40 H 1.09001 * 109.47048 * 213.33804 * 13 12 10 41 41 H 1.09004 * 109.46929 * 333.33244 * 13 12 10 42 42 H 0.96998 * 120.00142 * 179.97438 * 17 16 14 43 43 H 1.08008 * 120.03025 * 0.02562 * 23 22 12 44 44 H 1.07999 * 119.96022 * 180.22753 * 24 23 22 45 45 H 1.09002 * 109.46967 * 269.97468 * 26 25 24 46 46 H 1.09000 * 109.47288 * 29.97753 * 26 25 24 47 47 H 1.09003 * 109.46826 * 149.97773 * 26 25 24 48 48 H 1.08010 * 119.95879 * 180.02562 * 27 25 24 49 49 H 1.08001 * 120.03462 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 0.8376 5 6 1.6439 2.1235 -1.3115 6 6 3.5640 1.4446 0.1357 7 1 3.8479 0.9266 1.0517 8 8 4.1431 0.7778 -0.9877 9 6 4.4217 -0.6055 -0.7624 10 6 4.0617 2.8661 0.1876 11 8 4.7231 3.3108 -0.7267 12 7 3.7721 3.6432 1.2499 13 6 3.0866 3.0705 2.4112 14 6 4.1065 2.6228 3.4261 15 1 5.1600 2.7523 3.2264 16 6 3.6949 2.0489 4.6102 17 7 4.5850 1.6586 5.4962 18 14 1.8728 1.8256 4.9560 19 1 1.4313 0.5016 4.4488 20 1 1.6340 1.8997 6.4198 21 1 1.1044 2.8981 4.2743 22 6 4.1259 4.9969 1.2437 23 6 4.6461 5.5750 0.0931 24 6 4.9904 6.9125 0.0890 25 6 4.8269 7.6735 1.2319 26 6 5.2085 9.1314 1.2254 27 6 4.3136 7.0998 2.3807 28 6 3.9630 5.7640 2.3899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0839 1.5826 -2.1493 35 1 0.5582 2.1220 -1.4082 36 1 2.0076 3.1511 -1.3117 37 1 5.0517 -0.7102 0.1208 38 1 3.4866 -1.1438 -0.6076 39 1 4.9390 -1.0178 -1.6287 40 1 2.4364 3.8233 2.8570 41 1 2.4889 2.2155 2.0951 42 1 4.2954 1.2552 6.3294 43 1 4.7778 4.9801 -0.7986 44 1 5.3915 7.3634 -0.8066 45 1 6.2514 9.2354 1.5251 46 1 5.0765 9.5371 0.2224 47 1 4.5737 9.6763 1.9242 48 1 4.1868 7.6970 3.2716 49 1 3.5618 5.3166 3.2873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793255618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:01 Heat of formation + Delta-G solvation = -61.566789 kcal Electronic energy + Delta-G solvation = -28714.085178 eV Core-core repulsion = 25027.184243 eV Total energy + Delta-G solvation = -3686.900935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -42.14056 -40.12714 -38.80200 -37.30699 -36.21651 -34.74292 -33.07779 -31.82449 -31.34601 -30.06499 -28.82642 -27.54696 -26.80288 -25.18840 -24.56004 -23.32557 -22.37614 -21.27401 -20.64914 -19.17521 -18.54017 -18.06123 -17.55882 -17.05017 -16.51830 -16.37062 -16.16874 -15.71408 -15.50470 -15.20492 -14.91705 -14.65196 -14.59574 -14.47822 -14.43480 -14.34261 -13.93519 -13.55741 -13.47375 -13.12399 -12.99763 -12.92716 -12.83706 -12.72035 -12.59004 -12.45657 -12.22435 -12.20654 -12.08186 -11.87108 -11.80587 -11.57895 -11.41185 -10.86483 -10.82736 -10.67854 -10.10833 -9.80184 -8.65096 -8.36578 -6.46716 0.34882 0.54419 1.34816 1.37157 1.46110 1.52902 1.77193 2.28056 2.85681 2.94825 2.96700 3.33039 3.63775 3.85200 3.96604 4.08319 4.10203 4.18011 4.26610 4.33288 4.45318 4.45568 4.46338 4.52889 4.58679 4.60568 4.64528 4.70515 4.72861 4.78483 4.82283 4.92003 4.94949 4.98488 5.10656 5.14349 5.17632 5.18680 5.21398 5.29701 5.40600 5.42105 5.46997 5.52878 5.69922 5.78916 6.02142 6.06425 6.28015 6.44477 6.58290 7.03871 7.18924 8.79630 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009540 B = 0.005943 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.279000 B = 4710.591143 C = 6432.075214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.111 4.111 4 H 0.084 0.916 5 C -0.133 4.133 6 C 0.085 3.915 7 H 0.086 0.914 8 O -0.374 6.374 9 C 0.014 3.986 10 C 0.513 3.487 11 O -0.544 6.544 12 N -0.533 5.533 13 C 0.202 3.798 14 C -0.545 4.545 15 H 0.024 0.976 16 C 0.028 3.972 17 N -0.935 5.935 18 Si 0.930 3.070 19 H -0.249 1.249 20 H -0.281 1.281 21 H -0.238 1.238 22 C 0.132 3.868 23 C -0.186 4.186 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.102 4.102 27 C -0.104 4.104 28 C -0.157 4.157 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.271 0.729 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.144 0.856 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.688 2.437 -10.056 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.130 4.130 4 H 0.102 0.898 5 C -0.190 4.190 6 C 0.024 3.976 7 H 0.104 0.896 8 O -0.292 6.292 9 C -0.082 4.082 10 C 0.304 3.696 11 O -0.423 6.423 12 N -0.254 5.254 13 C 0.082 3.918 14 C -0.583 4.583 15 H 0.042 0.958 16 C -0.172 4.172 17 N -0.574 5.574 18 Si 0.751 3.249 19 H -0.173 1.173 20 H -0.207 1.207 21 H -0.162 1.162 22 C 0.038 3.962 23 C -0.205 4.205 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.158 4.158 27 C -0.122 4.122 28 C -0.178 4.178 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.174 0.826 44 H 0.160 0.840 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.162 0.838 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.305 2.568 -10.536 13.659 hybrid contribution 0.085 -0.585 1.223 1.358 sum -8.221 1.982 -9.313 12.579 Atomic orbital electron populations 1.21812 0.93940 1.02681 1.02300 1.21717 0.97622 0.93752 1.02679 1.21830 0.91140 0.99738 1.00308 0.89811 1.21699 1.02132 0.98766 0.96402 1.21945 0.94991 0.89565 0.91121 0.89612 1.87910 1.82267 1.24043 1.35022 1.23304 1.01382 0.80823 1.02706 1.21022 0.79047 0.88613 0.80916 1.90319 1.39369 1.73698 1.38931 1.45574 1.54959 1.07456 1.17416 1.20116 0.93013 0.95599 0.83112 1.21267 0.92888 1.41611 1.02528 0.95798 1.25723 1.02848 0.93722 0.94892 1.70041 1.36551 1.41378 1.09413 0.85975 0.79297 0.81144 0.78515 1.17314 1.20695 1.16156 1.18316 0.99174 0.83229 0.95499 1.22439 1.01960 0.97003 0.99125 1.21221 0.99608 0.92656 0.98974 1.20253 1.00539 0.98096 0.93229 1.20743 1.02003 0.89458 1.03618 1.21089 0.98733 0.93491 0.98881 1.21089 1.04689 0.95304 0.96704 0.91528 0.91171 0.93010 0.90057 0.92005 0.91782 0.89996 0.95335 0.94615 0.91088 0.87459 0.93273 0.91488 0.91951 0.82585 0.83960 0.90833 0.90429 0.90458 0.83791 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.68 71.98 0.70 -2.16 16 2 C -0.12 -2.81 4.08 30.60 0.12 -2.68 16 3 C -0.11 -3.30 1.86 -10.79 -0.02 -3.32 16 4 H 0.08 2.59 5.55 -2.39 -0.01 2.58 16 5 C -0.13 -3.69 8.57 71.98 0.62 -3.07 16 6 C 0.09 3.11 1.60 29.85 0.05 3.16 16 7 H 0.09 3.38 7.13 -2.39 -0.02 3.36 16 8 O -0.37 -12.99 8.95 -130.06 -1.16 -14.15 16 9 C 0.01 0.35 10.42 113.37 1.18 1.53 16 10 C 0.51 22.35 5.78 87.66 0.51 22.86 16 11 O -0.54 -25.61 13.01 15.86 0.21 -25.40 16 12 N -0.53 -23.67 2.68 -635.30 -1.71 -25.38 16 13 C 0.20 8.94 2.99 85.63 0.26 9.19 16 14 C -0.54 -29.34 9.54 25.60 0.24 -29.10 16 15 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 16 C 0.03 1.51 5.47 84.65 0.46 1.97 16 17 N -0.94 -54.79 13.96 21.45 0.30 -54.49 16 18 Si 0.93 38.29 27.47 68.60 1.88 40.18 16 19 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 20 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 21 H -0.24 -8.87 6.54 99.48 0.65 -8.22 16 22 C 0.13 5.76 6.48 38.15 0.25 6.00 16 23 C -0.19 -7.52 8.98 22.39 0.20 -7.32 16 24 C -0.11 -3.49 9.69 22.25 0.22 -3.28 16 25 C -0.12 -3.59 5.88 -19.84 -0.12 -3.71 16 26 C -0.10 -2.08 10.01 71.24 0.71 -1.36 16 27 C -0.10 -3.43 9.69 22.25 0.22 -3.21 16 28 C -0.16 -6.38 9.08 22.39 0.20 -6.18 16 29 H 0.07 1.14 6.58 -2.39 -0.02 1.13 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.72 6.17 -2.39 -0.01 1.71 16 33 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 34 H 0.06 1.78 7.63 -2.39 -0.02 1.76 16 35 H 0.08 1.81 6.58 -2.39 -0.02 1.80 16 36 H 0.03 0.91 7.28 -2.38 -0.02 0.89 16 37 H 0.04 0.99 7.98 -2.39 -0.02 0.97 16 38 H 0.07 1.51 5.30 -2.39 -0.01 1.50 16 39 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 2.11 5.78 -2.39 -0.01 2.10 16 41 H 0.07 2.69 3.59 -2.38 -0.01 2.68 16 42 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.16 6.82 4.69 -48.22 -0.23 6.59 16 44 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.08 1.34 8.08 -2.39 -0.02 1.32 16 47 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 48 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 49 H 0.12 5.17 6.19 -2.91 -0.02 5.15 16 Total: -1.00 -68.67 376.42 6.00 -62.68 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: 0.68 Total: 37.25 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 5.80 Total: -20.68 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.41 Total: -79.87 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.96 Total: -39.55 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 1.88 Total: 40.18 kcal Total: -68.67 6.00 -62.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793255618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.111 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds