Wall clock time and date at job start Tue Mar 31 2020 14:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46730 * 2 1 4 4 H 1.09001 * 109.47924 * 305.00085 * 3 2 1 5 5 C 1.53000 * 109.47114 * 65.00226 * 3 2 1 6 6 C 1.53003 * 109.47155 * 184.99919 * 3 2 1 7 7 C 1.52996 * 109.47269 * 175.00167 * 6 3 2 8 8 C 1.53003 * 109.47269 * 179.97438 * 7 6 3 9 9 H 1.09005 * 109.46901 * 54.99529 * 8 7 6 10 10 O 1.42904 * 109.47091 * 295.00218 * 8 7 6 11 11 C 1.52995 * 109.47132 * 175.00115 * 8 7 6 12 12 C 1.50703 * 109.46716 * 185.00153 * 11 8 7 13 13 O 1.21286 * 120.00386 * 359.97438 * 12 11 8 14 14 N 1.34780 * 119.99536 * 180.02562 * 12 11 8 15 15 C 1.39951 * 119.99568 * 174.87101 * 14 12 11 16 16 C 1.39291 * 119.94185 * 146.37894 * 15 14 12 17 17 C 1.38490 * 120.42377 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.32316 * 0.02562 * 17 16 15 19 19 C 1.40747 * 119.88270 * 0.02562 * 18 17 16 20 20 C 1.41407 * 120.20892 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00164 * 151.73581 * 20 19 18 22 22 C 1.39934 * 119.99974 * 331.74057 * 20 19 18 23 23 N 1.30831 * 120.00044 * 349.00178 * 22 20 19 24 24 Si 1.86797 * 120.00174 * 169.00799 * 22 20 19 25 25 H 1.48502 * 109.47486 * 94.99255 * 24 22 20 26 26 H 1.48503 * 109.47188 * 214.98987 * 24 22 20 27 27 H 1.48501 * 109.47067 * 334.98942 * 24 22 20 28 28 C 1.38235 * 119.94586 * 326.10184 * 15 14 12 29 29 H 1.08998 * 109.47315 * 299.99760 * 1 2 3 30 30 H 1.09000 * 109.47324 * 60.00185 * 1 2 3 31 31 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47315 * 240.00240 * 2 1 3 33 33 H 1.09000 * 109.47324 * 119.99815 * 2 1 3 34 34 H 1.09000 * 109.47530 * 299.99777 * 5 3 2 35 35 H 1.08999 * 109.47217 * 59.99866 * 5 3 2 36 36 H 1.09004 * 109.47164 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47021 * 54.99944 * 6 3 2 38 38 H 1.09003 * 109.46748 * 295.00152 * 6 3 2 39 39 H 1.09000 * 109.47117 * 60.00459 * 7 6 3 40 40 H 1.08990 * 109.47246 * 300.00311 * 7 6 3 41 41 H 0.96697 * 113.99938 * 300.00034 * 10 8 7 42 42 H 1.08996 * 109.47029 * 65.00338 * 11 8 7 43 43 H 1.08996 * 109.47304 * 304.99778 * 11 8 7 44 44 H 0.96995 * 120.00294 * 354.86949 * 14 12 11 45 45 H 1.08000 * 119.78867 * 359.97438 * 16 15 14 46 46 H 1.08001 * 119.83733 * 180.02562 * 17 16 15 47 47 H 1.07994 * 120.05832 * 179.97438 * 18 17 16 48 48 H 0.97001 * 120.00732 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.16551 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9817 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0644 2.8851 -0.2511 8 6 5.5893 2.8871 -0.3761 9 1 5.8863 2.2500 -1.2092 10 8 6.1670 2.3904 0.8329 11 6 6.0786 4.3150 -0.6262 12 6 7.5655 4.3006 -0.8714 13 8 8.1740 3.2517 -0.8479 14 7 8.2193 5.4536 -1.1157 15 6 9.6135 5.4553 -1.2368 16 6 10.2341 6.3412 -2.1144 17 6 11.6131 6.3517 -2.2418 18 6 12.3862 5.4853 -1.5019 19 6 11.7729 4.5838 -0.6119 20 6 12.5602 3.6913 0.1518 21 1 12.2057 3.3437 1.1109 22 6 13.7987 3.2587 -0.3351 23 7 14.1344 3.5008 -1.5762 24 14 14.9725 2.3353 0.7868 25 1 14.7879 0.8735 0.6013 26 1 16.3713 2.7040 0.4509 27 1 14.6918 2.6943 2.2002 28 6 10.3728 4.5816 -0.4811 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1252 1.3970 35 1 2.0698 1.5875 2.1492 36 1 1.9988 3.1541 1.3076 37 1 3.8570 0.8802 -1.0113 38 1 4.0029 0.9837 0.7597 39 1 3.7722 3.4494 0.6346 40 1 3.6263 3.3459 -1.1363 41 1 5.9444 2.9099 1.6175 42 1 5.8600 4.9318 0.2454 43 1 5.5705 4.7256 -1.4987 44 1 7.7235 6.2822 -1.2077 45 1 9.6361 7.0243 -2.6993 46 1 12.0844 7.0429 -2.9248 47 1 13.4611 5.4969 -1.6048 48 1 14.9931 3.2012 -1.9137 49 1 9.8929 3.8977 0.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837072042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:34 Heat of formation + Delta-G solvation = -102.548179 kcal Electronic energy + Delta-G solvation = -26131.661430 eV Core-core repulsion = 22442.983409 eV Total energy + Delta-G solvation = -3688.678021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -39.81722 -38.32686 -37.20149 -36.44494 -34.32841 -32.97336 -32.65517 -30.94308 -29.76110 -28.93596 -27.71676 -25.85197 -25.23447 -23.33759 -21.58249 -21.12736 -20.75665 -20.11515 -19.44154 -17.69042 -16.74940 -16.43649 -15.93030 -15.58429 -15.34113 -15.15329 -14.81664 -14.57664 -14.47134 -13.92377 -13.82928 -13.50478 -13.20838 -13.03757 -12.75682 -12.72448 -12.29401 -12.16467 -12.00606 -11.88871 -11.83933 -11.52829 -11.24282 -11.12628 -11.04879 -10.96881 -10.87486 -10.71705 -10.60135 -10.59001 -10.45199 -10.06727 -9.90405 -9.67991 -9.37217 -9.06889 -8.78288 -7.36624 -6.83256 -6.61193 -4.29202 2.68098 2.89210 3.13683 3.19003 3.24186 3.44129 3.63743 4.02799 4.32107 4.48729 4.58156 4.60938 4.72482 4.77482 4.85623 4.99014 5.09261 5.15249 5.20876 5.27027 5.32304 5.38840 5.51623 5.53103 5.60648 5.66186 5.72350 5.77042 5.77648 5.81100 5.87762 5.98785 6.06711 6.21347 6.24487 6.27875 6.42461 6.84437 7.07212 7.10823 7.14073 7.32836 7.62249 7.76030 7.78915 8.02704 8.15357 8.24541 8.34045 8.70784 8.83218 9.00821 9.04286 10.32125 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.002302 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.907984 B =12159.079677 C =13324.935366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.067 0.933 5 C -0.150 4.150 6 C -0.112 4.112 7 C -0.151 4.151 8 C 0.123 3.877 9 H 0.104 0.896 10 O -0.541 6.541 11 C -0.174 4.174 12 C 0.499 3.501 13 O -0.497 6.497 14 N -0.674 5.674 15 C 0.150 3.850 16 C -0.261 4.261 17 C -0.095 4.095 18 C -0.168 4.168 19 C 0.118 3.882 20 C -0.456 4.456 21 H 0.076 0.924 22 C 0.072 3.928 23 N -0.802 5.802 24 Si 0.911 3.089 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.207 4.207 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.365 0.635 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.396 0.604 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.121 0.879 48 H 0.278 0.722 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.579 0.334 2.812 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.111 4.111 4 H 0.085 0.915 5 C -0.207 4.207 6 C -0.149 4.149 7 C -0.189 4.189 8 C 0.063 3.937 9 H 0.122 0.878 10 O -0.345 6.345 11 C -0.215 4.215 12 C 0.285 3.715 13 O -0.370 6.370 14 N -0.319 5.319 15 C 0.058 3.942 16 C -0.282 4.282 17 C -0.114 4.114 18 C -0.188 4.188 19 C 0.115 3.885 20 C -0.486 4.486 21 H 0.094 0.906 22 C -0.144 4.144 23 N -0.428 5.428 24 Si 0.736 3.264 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.228 4.228 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.211 0.789 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.139 0.861 48 H 0.089 0.911 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.736 -0.969 2.277 21.877 hybrid contribution -0.004 0.568 0.499 0.756 sum -21.741 -0.400 2.776 21.921 Atomic orbital electron populations 1.21826 0.96110 1.01415 1.01750 1.21585 0.95659 0.96534 1.02110 1.21195 0.95715 0.95993 0.98238 0.91473 1.21933 1.00977 1.00495 0.97295 1.21577 0.94232 0.96287 1.02854 1.22382 0.95992 0.97992 1.02546 1.21675 0.90381 0.92552 0.89061 0.87816 1.86772 1.75353 1.55958 1.16386 1.22483 0.94197 1.00606 1.04197 1.20471 0.89225 0.84082 0.77736 1.90817 1.68417 1.30368 1.47408 1.43533 1.06742 1.09861 1.71750 1.17448 0.80133 0.99137 0.97479 1.20057 0.94811 1.07057 1.06309 1.20478 0.92914 0.98850 0.99154 1.21398 0.99797 0.96562 1.01043 1.17527 0.90281 0.90045 0.90694 1.19545 1.00958 1.23498 1.04627 0.90574 1.25886 0.98237 0.95258 0.94984 1.69807 1.21400 1.37633 1.13971 0.86257 0.79077 0.79881 0.81219 1.19600 1.20172 1.18539 1.20997 0.93433 1.03565 1.04837 0.92578 0.92910 0.92988 0.92027 0.91974 0.92810 0.92685 0.92611 0.91921 0.91082 0.91417 0.91186 0.78949 0.88928 0.88517 0.77100 0.89412 0.89101 0.86107 0.91091 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.87 5.40 -26.73 -0.14 -1.01 16 3 C -0.09 -0.67 2.39 -90.62 -0.22 -0.89 16 4 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.00 8.70 37.16 0.32 -0.67 16 6 C -0.11 -0.96 4.58 -26.73 -0.12 -1.09 16 7 C -0.15 -1.23 4.65 -26.73 -0.12 -1.35 16 8 C 0.12 1.43 2.51 -26.73 -0.07 1.36 16 9 H 0.10 1.45 7.96 -51.93 -0.41 1.04 16 10 O -0.54 -7.46 12.11 -49.66 -0.60 -8.06 16 11 C -0.17 -1.94 5.38 -27.88 -0.15 -2.09 16 12 C 0.50 8.82 7.44 -10.98 -0.08 8.74 16 13 O -0.50 -11.51 13.13 -8.88 -0.12 -11.63 16 14 N -0.67 -12.00 5.34 -9.91 -0.05 -12.05 16 15 C 0.15 3.46 6.26 -83.76 -0.52 2.93 16 16 C -0.26 -5.86 9.97 -39.10 -0.39 -6.25 16 17 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 18 C -0.17 -4.52 8.66 -38.84 -0.34 -4.85 16 19 C 0.12 3.32 5.55 -106.85 -0.59 2.72 16 20 C -0.46 -12.86 9.06 -37.74 -0.34 -13.20 16 21 H 0.08 2.09 7.87 -52.49 -0.41 1.68 16 22 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 23 N -0.80 -21.72 10.82 55.55 0.60 -21.12 16 24 Si 0.91 19.72 29.57 -169.99 -5.03 14.70 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 27 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 28 C -0.21 -5.50 8.39 -38.69 -0.32 -5.83 16 29 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.33 6.57 -51.93 -0.34 -0.01 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.35 6.56 -51.93 -0.34 0.01 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 39 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.36 3.57 9.05 45.56 0.41 3.99 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.40 5.31 8.82 -40.82 -0.36 4.95 16 45 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 46 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 47 H 0.12 3.33 6.18 -52.49 -0.32 3.00 16 48 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 49 H 0.11 2.96 6.44 -52.49 -0.34 2.62 16 LS Contribution 392.40 15.07 5.91 5.91 Total: -1.00 -33.38 392.40 -9.92 -43.30 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.41 Total: 11.86 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -3.22 Total: -22.91 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.55 Total: -33.17 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.72 Total: -19.69 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.38 -9.92 -43.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.249 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds