Wall clock time and date at job start Tue Mar 31 2020 14:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46730 * 2 1 4 4 H 1.09001 * 109.47924 * 305.00085 * 3 2 1 5 5 C 1.53000 * 109.47114 * 65.00226 * 3 2 1 6 6 C 1.53003 * 109.47155 * 184.99919 * 3 2 1 7 7 C 1.52996 * 109.47269 * 175.00167 * 6 3 2 8 8 C 1.53003 * 109.47269 * 179.97438 * 7 6 3 9 9 H 1.09005 * 109.46901 * 54.99529 * 8 7 6 10 10 O 1.42904 * 109.47091 * 295.00218 * 8 7 6 11 11 C 1.52995 * 109.47132 * 175.00115 * 8 7 6 12 12 C 1.50703 * 109.46716 * 185.00153 * 11 8 7 13 13 O 1.21286 * 120.00386 * 359.97438 * 12 11 8 14 14 N 1.34780 * 119.99536 * 180.02562 * 12 11 8 15 15 C 1.39951 * 119.99568 * 174.87101 * 14 12 11 16 16 C 1.39291 * 119.94185 * 146.37894 * 15 14 12 17 17 C 1.38490 * 120.42377 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.32316 * 0.02562 * 17 16 15 19 19 C 1.40747 * 119.88270 * 0.02562 * 18 17 16 20 20 C 1.41407 * 120.20892 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00164 * 151.73581 * 20 19 18 22 22 C 1.39934 * 119.99974 * 331.74057 * 20 19 18 23 23 N 1.30831 * 120.00044 * 349.00178 * 22 20 19 24 24 Si 1.86797 * 120.00174 * 169.00799 * 22 20 19 25 25 H 1.48502 * 109.47486 * 94.99255 * 24 22 20 26 26 H 1.48503 * 109.47188 * 214.98987 * 24 22 20 27 27 H 1.48501 * 109.47067 * 334.98942 * 24 22 20 28 28 C 1.38235 * 119.94586 * 326.10184 * 15 14 12 29 29 H 1.08998 * 109.47315 * 299.99760 * 1 2 3 30 30 H 1.09000 * 109.47324 * 60.00185 * 1 2 3 31 31 H 1.08997 * 109.46852 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47315 * 240.00240 * 2 1 3 33 33 H 1.09000 * 109.47324 * 119.99815 * 2 1 3 34 34 H 1.09000 * 109.47530 * 299.99777 * 5 3 2 35 35 H 1.08999 * 109.47217 * 59.99866 * 5 3 2 36 36 H 1.09004 * 109.47164 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47021 * 54.99944 * 6 3 2 38 38 H 1.09003 * 109.46748 * 295.00152 * 6 3 2 39 39 H 1.09000 * 109.47117 * 60.00459 * 7 6 3 40 40 H 1.08990 * 109.47246 * 300.00311 * 7 6 3 41 41 H 0.96697 * 113.99938 * 300.00034 * 10 8 7 42 42 H 1.08996 * 109.47029 * 65.00338 * 11 8 7 43 43 H 1.08996 * 109.47304 * 304.99778 * 11 8 7 44 44 H 0.96995 * 120.00294 * 354.86949 * 14 12 11 45 45 H 1.08000 * 119.78867 * 359.97438 * 16 15 14 46 46 H 1.08001 * 119.83733 * 180.02562 * 17 16 15 47 47 H 1.07994 * 120.05832 * 179.97438 * 18 17 16 48 48 H 0.97001 * 120.00732 * 179.97438 * 23 22 20 49 49 H 1.08001 * 120.16551 * 359.97438 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9817 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0644 2.8851 -0.2511 8 6 5.5893 2.8871 -0.3761 9 1 5.8863 2.2500 -1.2092 10 8 6.1670 2.3904 0.8329 11 6 6.0786 4.3150 -0.6262 12 6 7.5655 4.3006 -0.8714 13 8 8.1740 3.2517 -0.8479 14 7 8.2193 5.4536 -1.1157 15 6 9.6135 5.4553 -1.2368 16 6 10.2341 6.3412 -2.1144 17 6 11.6131 6.3517 -2.2418 18 6 12.3862 5.4853 -1.5019 19 6 11.7729 4.5838 -0.6119 20 6 12.5602 3.6913 0.1518 21 1 12.2057 3.3437 1.1109 22 6 13.7987 3.2587 -0.3351 23 7 14.1344 3.5008 -1.5762 24 14 14.9725 2.3353 0.7868 25 1 14.7879 0.8735 0.6013 26 1 16.3713 2.7040 0.4509 27 1 14.6918 2.6943 2.2002 28 6 10.3728 4.5816 -0.4811 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1252 1.3970 35 1 2.0698 1.5875 2.1492 36 1 1.9988 3.1541 1.3076 37 1 3.8570 0.8802 -1.0113 38 1 4.0029 0.9837 0.7597 39 1 3.7722 3.4494 0.6346 40 1 3.6263 3.3459 -1.1363 41 1 5.9444 2.9099 1.6175 42 1 5.8600 4.9318 0.2454 43 1 5.5705 4.7256 -1.4987 44 1 7.7235 6.2822 -1.2077 45 1 9.6361 7.0243 -2.6993 46 1 12.0844 7.0429 -2.9248 47 1 13.4611 5.4969 -1.6048 48 1 14.9931 3.2012 -1.9137 49 1 9.8929 3.8977 0.2032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837072042.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:31 Heat of formation + Delta-G solvation = -123.605195 kcal Electronic energy + Delta-G solvation = -26132.574531 eV Core-core repulsion = 22442.983409 eV Total energy + Delta-G solvation = -3689.591122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.27336 -39.44656 -38.64880 -37.39757 -36.12117 -34.79286 -33.47021 -31.90469 -31.74494 -30.04809 -28.94564 -27.26855 -26.55723 -24.30596 -23.02784 -22.62022 -22.03821 -21.10723 -20.63728 -19.51710 -18.12922 -17.41685 -17.38918 -17.01960 -16.61567 -16.46046 -16.16416 -15.76208 -15.59588 -15.11085 -14.84826 -14.67376 -14.58694 -14.40825 -14.08003 -13.76332 -13.63171 -13.36053 -13.11262 -12.88428 -12.84337 -12.73322 -12.63005 -12.52423 -12.42294 -12.21957 -11.96709 -11.76461 -11.74796 -11.56699 -11.51073 -11.35868 -11.22337 -11.21800 -10.90831 -10.75236 -10.46883 -9.36559 -8.70064 -8.57879 -6.39326 0.89182 0.99689 1.34281 1.46045 1.50181 1.89291 2.20068 2.30400 2.75077 3.50808 3.69409 3.72337 3.77274 3.98430 4.01794 4.11157 4.27679 4.36737 4.43876 4.47327 4.60082 4.61923 4.64215 4.69629 4.74057 4.80189 4.90986 4.97063 5.04874 5.06857 5.10953 5.14218 5.15032 5.20614 5.25044 5.26549 5.30434 5.32077 5.34135 5.41646 5.61276 5.62924 5.78119 5.86775 6.07371 6.12522 6.36427 6.68896 6.72917 6.94019 6.97678 7.01110 7.45430 8.36511 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.002302 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.907984 B =12159.079677 C =13324.935366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.087 4.087 4 H 0.075 0.925 5 C -0.148 4.148 6 C -0.112 4.112 7 C -0.137 4.137 8 C 0.120 3.880 9 H 0.069 0.931 10 O -0.574 6.574 11 C -0.157 4.157 12 C 0.492 3.508 13 O -0.560 6.560 14 N -0.662 5.662 15 C 0.156 3.844 16 C -0.249 4.249 17 C -0.094 4.094 18 C -0.194 4.194 19 C 0.084 3.916 20 C -0.501 4.501 21 H 0.063 0.937 22 C 0.030 3.970 23 N -0.832 5.832 24 Si 0.986 3.014 25 H -0.267 1.267 26 H -0.258 1.258 27 H -0.260 1.260 28 C -0.233 4.233 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.380 0.620 42 H 0.130 0.870 43 H 0.136 0.864 44 H 0.422 0.578 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.105 0.895 48 H 0.287 0.713 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.945 2.348 2.428 25.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.106 4.106 4 H 0.093 0.907 5 C -0.206 4.206 6 C -0.150 4.150 7 C -0.174 4.174 8 C 0.061 3.939 9 H 0.088 0.912 10 O -0.381 6.381 11 C -0.196 4.196 12 C 0.281 3.719 13 O -0.437 6.437 14 N -0.309 5.309 15 C 0.062 3.938 16 C -0.270 4.270 17 C -0.113 4.113 18 C -0.214 4.214 19 C 0.081 3.919 20 C -0.531 4.531 21 H 0.082 0.918 22 C -0.183 4.183 23 N -0.459 5.459 24 Si 0.806 3.194 25 H -0.192 1.192 26 H -0.182 1.182 27 H -0.183 1.183 28 C -0.255 4.255 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.228 0.772 42 H 0.148 0.852 43 H 0.154 0.846 44 H 0.260 0.740 45 H 0.151 0.849 46 H 0.141 0.859 47 H 0.123 0.877 48 H 0.098 0.902 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.161 1.104 1.887 24.259 hybrid contribution 0.599 -0.014 0.548 0.812 sum -23.562 1.089 2.435 23.712 Atomic orbital electron populations 1.21807 0.95145 1.01721 1.02180 1.21604 0.96515 0.96624 1.01452 1.21147 0.94365 0.96056 0.99011 0.90681 1.21924 1.01462 1.00719 0.96447 1.21550 0.95396 0.96656 1.01360 1.22261 0.92883 0.97808 1.04442 1.21698 0.92641 0.92177 0.87396 0.91244 1.86734 1.76281 1.57252 1.17789 1.22518 0.88699 1.01011 1.07413 1.21739 0.91798 0.82779 0.75548 1.90809 1.70368 1.32688 1.49832 1.43479 1.04651 1.11514 1.71284 1.17553 0.82728 0.97571 0.95912 1.20520 0.94659 1.06566 1.05220 1.20869 0.93745 0.98193 0.98505 1.21350 0.99456 0.98036 1.02560 1.17890 0.91324 0.90890 0.91763 1.19744 1.02999 1.25469 1.04907 0.91842 1.26757 0.99251 0.95825 0.96481 1.69857 1.22236 1.38507 1.15334 0.85153 0.77144 0.78239 0.78866 1.19212 1.18207 1.18334 1.20935 0.93390 1.04988 1.06212 0.92079 0.92475 0.92833 0.92706 0.92725 0.92066 0.93406 0.91708 0.93377 0.92852 0.89299 0.89152 0.77184 0.85235 0.84568 0.74022 0.84856 0.85889 0.87676 0.90236 0.89899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 71.98 0.70 -0.98 16 2 C -0.12 -1.70 5.40 30.60 0.17 -1.53 16 3 C -0.09 -1.12 2.39 -10.79 -0.03 -1.14 16 4 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 5 C -0.15 -1.63 8.70 71.98 0.63 -1.00 16 6 C -0.11 -1.84 4.58 30.59 0.14 -1.70 16 7 C -0.14 -1.85 4.65 30.59 0.14 -1.71 16 8 C 0.12 2.66 2.51 30.59 0.08 2.74 16 9 H 0.07 2.00 7.96 -2.38 -0.02 1.98 16 10 O -0.57 -15.99 12.11 -135.18 -1.64 -17.62 16 11 C -0.16 -2.97 5.38 29.85 0.16 -2.81 16 12 C 0.49 16.87 7.44 87.66 0.65 17.53 16 13 O -0.56 -26.86 13.13 10.75 0.14 -26.72 16 14 N -0.66 -22.12 5.34 -303.64 -1.62 -23.75 16 15 C 0.16 7.10 6.26 38.10 0.24 7.33 16 16 C -0.25 -10.54 9.97 22.58 0.23 -10.31 16 17 C -0.09 -4.40 10.02 22.20 0.22 -4.17 16 18 C -0.19 -10.74 8.66 22.75 0.20 -10.54 16 19 C 0.08 4.99 5.55 -21.31 -0.12 4.87 16 20 C -0.50 -30.06 9.06 23.46 0.21 -29.85 16 21 H 0.06 3.78 7.87 -2.91 -0.02 3.75 16 22 C 0.03 1.65 5.25 85.25 0.45 2.10 16 23 N -0.83 -46.73 10.82 21.82 0.24 -46.49 16 24 Si 0.99 41.78 29.57 68.60 2.03 43.81 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 27 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 28 C -0.23 -12.97 8.39 22.85 0.19 -12.78 16 29 H 0.06 0.61 6.56 -2.39 -0.02 0.60 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.59 6.57 -2.39 -0.02 0.58 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.60 6.56 -2.38 -0.02 0.58 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 39 H 0.09 0.88 6.56 -2.39 -0.02 0.86 16 40 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.38 7.20 9.05 -74.06 -0.67 6.53 16 42 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.42 9.54 8.82 -92.71 -0.82 8.72 16 45 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 46 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 47 H 0.11 6.04 6.18 -2.91 -0.02 6.03 16 48 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 49 H 0.08 4.91 6.44 -2.91 -0.02 4.89 16 Total: -1.00 -79.82 392.40 2.86 -76.96 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.54 Total: 37.77 kcal Atomic # 6 Polarization: -48.21 SS G_CDS: 4.25 Total: -43.95 kcal Atomic # 7 Polarization: -68.85 SS G_CDS: -1.39 Total: -70.24 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: -1.50 Total: -44.35 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -79.82 2.86 -76.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837072042.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.646 kcal (2) G-P(sol) polarization free energy of solvation -79.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds