Wall clock time and date at job start Tue Mar 31 2020 14:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46677 * 2 1 4 4 H 1.09002 * 109.47351 * 54.99466 * 3 2 1 5 5 C 1.52994 * 109.47134 * 294.99293 * 3 2 1 6 6 C 1.53001 * 109.46666 * 174.99480 * 3 2 1 7 7 C 1.53001 * 109.47444 * 293.72269 * 6 3 2 8 8 H 1.08999 * 109.46849 * 55.66559 * 7 6 3 9 9 C 1.53001 * 109.47242 * 175.66360 * 7 6 3 10 10 O 1.42897 * 109.47184 * 54.99912 * 9 7 6 11 11 N 1.46498 * 109.47036 * 295.66672 * 7 6 3 12 12 C 1.34779 * 120.00083 * 155.00055 * 11 7 6 13 13 O 1.21280 * 119.99813 * 359.97438 * 12 11 7 14 14 C 1.50693 * 120.00124 * 179.97438 * 12 11 7 15 15 C 1.50700 * 109.47121 * 180.02562 * 14 12 11 16 16 C 1.37644 * 120.12449 * 264.99733 * 15 14 12 17 17 C 1.38613 * 120.24788 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.50020 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24895 * 0.03029 * 18 17 16 20 20 C 1.40697 * 120.13102 * 84.72340 * 15 14 12 21 21 C 1.41394 * 120.24196 * 359.97438 * 20 15 14 22 22 H 1.07996 * 120.00230 * 328.69719 * 21 20 15 23 23 C 1.39950 * 119.99485 * 148.69376 * 21 20 15 24 24 N 1.30819 * 119.99387 * 163.03471 * 23 21 20 25 25 Si 1.86800 * 120.00370 * 343.03499 * 23 21 20 26 26 H 1.48499 * 109.46970 * 95.13907 * 25 23 21 27 27 H 1.48502 * 109.47204 * 215.13944 * 25 23 21 28 28 H 1.48503 * 109.46933 * 335.13800 * 25 23 21 29 29 H 1.08997 * 109.47453 * 300.00222 * 1 2 3 30 30 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46419 * 60.00679 * 1 2 3 32 32 H 1.09003 * 109.46419 * 119.99320 * 2 1 3 33 33 H 1.08997 * 109.47453 * 239.99777 * 2 1 3 34 34 H 1.09006 * 109.47427 * 60.44118 * 5 3 2 35 35 H 1.09002 * 109.47424 * 180.44084 * 5 3 2 36 36 H 1.08999 * 109.47657 * 300.44427 * 5 3 2 37 37 H 1.09001 * 109.47088 * 53.72932 * 6 3 2 38 38 H 1.09000 * 109.47163 * 173.72551 * 6 3 2 39 39 H 1.08994 * 109.46898 * 175.00785 * 9 7 6 40 40 H 1.09004 * 109.46566 * 295.00284 * 9 7 6 41 41 H 0.96696 * 114.00232 * 180.02562 * 10 9 7 42 42 H 0.97000 * 119.99717 * 334.99054 * 11 7 6 43 43 H 1.09000 * 109.47030 * 299.99543 * 14 12 11 44 44 H 1.09005 * 109.47377 * 59.99840 * 14 12 11 45 45 H 1.08001 * 119.87797 * 0.02562 * 16 15 14 46 46 H 1.07999 * 119.74663 * 180.02562 * 17 16 15 47 47 H 1.08007 * 119.87316 * 179.97438 * 18 17 16 48 48 H 1.08005 * 120.12373 * 179.97438 * 19 18 17 49 49 H 0.97010 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1259 7 6 3.9638 0.9033 1.5002 8 1 3.5264 -0.0849 1.6426 9 6 5.4881 0.8035 1.5862 10 8 6.0665 2.0750 1.2845 11 7 3.4741 1.8088 2.5425 12 6 3.2443 1.3433 3.7863 13 8 3.4425 0.1745 4.0425 14 6 2.7411 2.2749 4.8586 15 6 2.5682 1.5117 6.1465 16 6 1.3385 0.9922 6.4819 17 6 1.1767 0.2893 7.6656 18 6 2.2487 0.1016 8.5247 19 6 3.4868 0.6130 8.2103 20 6 3.6644 1.3224 7.0079 21 6 4.9338 1.8460 6.6707 22 1 5.2257 1.9293 5.6343 23 6 5.8120 2.2564 7.6802 24 7 7.0818 2.4238 7.4141 25 14 5.1709 2.5651 9.4074 26 1 5.3614 1.3446 10.2316 27 1 5.9161 3.6956 10.0173 28 1 3.7256 2.9006 9.3463 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8935 -0.5138 -0.8899 34 1 0.5487 2.1321 -1.3934 35 1 2.0053 3.1518 -1.3108 36 1 2.0635 1.5829 -2.1496 37 1 3.9943 0.8130 -0.6520 38 1 3.9374 2.4626 0.0142 39 1 5.7763 0.5030 2.5935 40 1 5.8447 0.0631 0.8701 41 1 7.0327 2.0858 1.3197 42 1 3.3154 2.7435 2.3375 43 1 3.4609 3.0798 5.0076 44 1 1.7830 2.6959 4.5538 45 1 0.4967 1.1321 5.8199 46 1 0.2083 -0.1151 7.9205 47 1 2.1111 -0.4473 9.4446 48 1 4.3203 0.4659 8.8812 49 1 7.6907 2.7080 8.1139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844038293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:48 Heat of formation + Delta-G solvation = -98.464837 kcal Electronic energy + Delta-G solvation = -27779.382800 eV Core-core repulsion = 24090.881845 eV Total energy + Delta-G solvation = -3688.500954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.61747 -38.09451 -37.11706 -36.32491 -33.90051 -33.52167 -31.90025 -30.73281 -30.25843 -29.39470 -26.78116 -26.29228 -24.77438 -23.59266 -21.65792 -21.22536 -20.42505 -19.65162 -19.33022 -17.33818 -17.28979 -16.38310 -15.90228 -15.55125 -15.32021 -14.82229 -14.45945 -14.41655 -14.17367 -13.95661 -13.69221 -13.54345 -13.22153 -13.00426 -12.64594 -12.40575 -12.35168 -12.17124 -12.03681 -11.88009 -11.79664 -11.56718 -11.34965 -11.22227 -11.01989 -10.75873 -10.68615 -10.64033 -10.46338 -10.35150 -10.19848 -9.82770 -9.65254 -9.51001 -9.09712 -9.06294 -8.56409 -7.53837 -7.43300 -6.87116 -4.41602 2.62172 2.77092 3.16323 3.24402 3.36339 3.41275 3.73597 4.03919 4.45186 4.57951 4.62905 4.72041 4.81787 5.09696 5.30893 5.35428 5.40458 5.46266 5.48027 5.49891 5.56408 5.67666 5.69800 5.80325 5.85865 5.87194 5.94252 5.98798 6.03308 6.06406 6.07525 6.14936 6.23415 6.27074 6.35423 6.36395 6.38182 6.65609 6.77803 6.95446 7.01327 7.26790 7.49045 7.72010 7.74824 7.80278 7.96755 8.08221 8.20950 8.43055 8.74928 8.88931 8.95460 10.15320 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003998 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.786617 B = 7002.198839 C = 8395.488224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.094 4.094 4 H 0.074 0.926 5 C -0.147 4.147 6 C -0.115 4.115 7 C 0.150 3.850 8 H 0.097 0.903 9 C 0.061 3.939 10 O -0.569 6.569 11 N -0.728 5.728 12 C 0.518 3.482 13 O -0.527 6.527 14 C -0.075 4.075 15 C -0.162 4.162 16 C -0.070 4.070 17 C -0.241 4.241 18 C -0.082 4.082 19 C -0.233 4.233 20 C 0.110 3.890 21 C -0.444 4.444 22 H 0.089 0.911 23 C 0.085 3.915 24 N -0.813 5.813 25 Si 0.908 3.092 26 H -0.272 1.272 27 H -0.293 1.293 28 H -0.244 1.244 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.376 0.624 42 H 0.397 0.603 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 0.917 -14.288 15.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.113 4.113 4 H 0.092 0.908 5 C -0.204 4.204 6 C -0.153 4.153 7 C 0.045 3.955 8 H 0.115 0.885 9 C -0.018 4.018 10 O -0.374 6.374 11 N -0.382 5.382 12 C 0.305 3.695 13 O -0.401 6.401 14 C -0.115 4.115 15 C -0.164 4.164 16 C -0.089 4.089 17 C -0.260 4.260 18 C -0.100 4.100 19 C -0.252 4.252 20 C 0.107 3.893 21 C -0.473 4.473 22 H 0.107 0.893 23 C -0.133 4.133 24 N -0.438 5.438 25 Si 0.735 3.265 26 H -0.198 1.198 27 H -0.220 1.220 28 H -0.167 1.167 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.223 0.777 42 H 0.231 0.769 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.611 0.286 -14.136 15.608 hybrid contribution 0.605 0.253 0.785 1.023 sum -6.005 0.539 -13.351 14.649 Atomic orbital electron populations 1.21802 0.96060 1.01400 1.01671 1.21643 0.95888 0.96507 1.02028 1.21194 0.95327 0.96381 0.98350 0.90797 1.21868 1.01153 1.00228 0.97139 1.21808 0.95209 1.02680 0.95611 1.20993 0.91473 0.95530 0.87551 0.88502 1.22677 0.94283 0.84965 0.99870 1.86412 1.24906 1.32653 1.93387 1.46039 1.69245 1.12804 1.10095 1.21055 0.76573 0.89440 0.82387 1.90672 1.50686 1.18099 1.80659 1.20293 1.01324 0.97961 0.91913 1.19100 0.93339 1.06773 0.97195 1.20429 0.95694 0.96994 0.95756 1.20328 0.97623 1.09963 0.98088 1.20591 0.93473 0.98370 0.97571 1.21003 0.96625 1.06764 1.00788 1.17486 0.92219 0.89245 0.90387 1.19405 0.96245 1.35787 0.95824 0.89298 1.26132 0.93849 0.92231 1.01103 1.69701 1.03477 1.34315 1.36263 0.86359 0.81241 0.77678 0.81184 1.19821 1.22036 1.16704 0.92720 0.93041 0.92801 0.91537 0.92280 0.92629 0.92809 0.92953 0.91103 0.90525 0.92507 0.93671 0.77722 0.76948 0.88240 0.90499 0.89152 0.89066 0.89065 0.88381 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.26 5.29 -26.73 -0.14 -1.40 16 3 C -0.09 -0.93 2.33 -90.62 -0.21 -1.14 16 4 H 0.07 0.80 7.56 -51.93 -0.39 0.41 16 5 C -0.15 -1.23 8.94 37.15 0.33 -0.90 16 6 C -0.12 -1.22 3.94 -26.73 -0.11 -1.33 16 7 C 0.15 2.04 2.25 -67.93 -0.15 1.89 16 8 H 0.10 1.45 5.76 -51.93 -0.30 1.15 16 9 C 0.06 0.86 6.85 37.16 0.25 1.12 16 10 O -0.57 -7.60 12.81 -35.23 -0.45 -8.05 16 11 N -0.73 -11.00 4.35 -53.81 -0.23 -11.23 16 12 C 0.52 10.09 7.38 -10.99 -0.08 10.01 16 13 O -0.53 -12.48 15.70 5.56 0.09 -12.40 16 14 C -0.08 -1.46 5.20 -29.04 -0.15 -1.61 16 15 C -0.16 -3.78 4.43 -103.91 -0.46 -4.24 16 16 C -0.07 -1.54 9.66 -39.66 -0.38 -1.92 16 17 C -0.24 -5.26 10.05 -39.29 -0.39 -5.65 16 18 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 19 C -0.23 -5.89 7.14 -38.87 -0.28 -6.17 16 20 C 0.11 2.85 5.08 -106.83 -0.54 2.30 16 21 C -0.44 -12.08 8.53 -37.74 -0.32 -12.41 16 22 H 0.09 2.56 7.03 -52.49 -0.37 2.19 16 23 C 0.08 2.25 5.42 -17.34 -0.09 2.16 16 24 N -0.81 -21.91 13.93 55.55 0.77 -21.13 16 25 Si 0.91 21.18 24.52 -169.99 -4.17 17.01 16 26 H -0.27 -6.24 6.72 56.52 0.38 -5.86 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.24 -5.79 6.84 56.52 0.39 -5.41 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 6.57 -51.93 -0.34 0.11 16 32 H 0.07 0.80 6.31 -51.93 -0.33 0.48 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.44 6.59 -51.93 -0.34 0.10 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.84 7.71 -51.93 -0.40 0.44 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.38 3.74 9.12 45.56 0.42 4.16 16 42 H 0.40 5.16 8.60 -40.82 -0.35 4.81 16 43 H 0.10 1.96 7.17 -51.93 -0.37 1.59 16 44 H 0.08 1.22 8.05 -51.93 -0.42 0.80 16 45 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 47 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 48 H 0.10 2.48 4.80 -52.48 -0.25 2.22 16 49 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 LS Contribution 387.03 15.07 5.83 5.83 Total: -1.00 -31.49 387.03 -8.20 -39.69 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.27 Total: 12.92 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -2.77 Total: -22.64 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.54 Total: -32.36 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.36 Total: -20.44 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.49 -8.20 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844038293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.775 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds