Wall clock time and date at job start Tue Mar 31 2020 14:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46677 * 2 1 4 4 H 1.09002 * 109.47351 * 54.99466 * 3 2 1 5 5 C 1.52994 * 109.47134 * 294.99293 * 3 2 1 6 6 C 1.53001 * 109.46666 * 174.99480 * 3 2 1 7 7 C 1.53001 * 109.47444 * 293.72269 * 6 3 2 8 8 H 1.08999 * 109.46849 * 55.66559 * 7 6 3 9 9 C 1.53001 * 109.47242 * 175.66360 * 7 6 3 10 10 O 1.42897 * 109.47184 * 54.99912 * 9 7 6 11 11 N 1.46498 * 109.47036 * 295.66672 * 7 6 3 12 12 C 1.34779 * 120.00083 * 155.00055 * 11 7 6 13 13 O 1.21280 * 119.99813 * 359.97438 * 12 11 7 14 14 C 1.50693 * 120.00124 * 179.97438 * 12 11 7 15 15 C 1.50700 * 109.47121 * 180.02562 * 14 12 11 16 16 C 1.37644 * 120.12449 * 264.99733 * 15 14 12 17 17 C 1.38613 * 120.24788 * 179.97438 * 16 15 14 18 18 C 1.38655 * 120.50020 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24895 * 0.03029 * 18 17 16 20 20 C 1.40697 * 120.13102 * 84.72340 * 15 14 12 21 21 C 1.41394 * 120.24196 * 359.97438 * 20 15 14 22 22 H 1.07996 * 120.00230 * 328.69719 * 21 20 15 23 23 C 1.39950 * 119.99485 * 148.69376 * 21 20 15 24 24 N 1.30819 * 119.99387 * 163.03471 * 23 21 20 25 25 Si 1.86800 * 120.00370 * 343.03499 * 23 21 20 26 26 H 1.48499 * 109.46970 * 95.13907 * 25 23 21 27 27 H 1.48502 * 109.47204 * 215.13944 * 25 23 21 28 28 H 1.48503 * 109.46933 * 335.13800 * 25 23 21 29 29 H 1.08997 * 109.47453 * 300.00222 * 1 2 3 30 30 H 1.09004 * 109.47081 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46419 * 60.00679 * 1 2 3 32 32 H 1.09003 * 109.46419 * 119.99320 * 2 1 3 33 33 H 1.08997 * 109.47453 * 239.99777 * 2 1 3 34 34 H 1.09006 * 109.47427 * 60.44118 * 5 3 2 35 35 H 1.09002 * 109.47424 * 180.44084 * 5 3 2 36 36 H 1.08999 * 109.47657 * 300.44427 * 5 3 2 37 37 H 1.09001 * 109.47088 * 53.72932 * 6 3 2 38 38 H 1.09000 * 109.47163 * 173.72551 * 6 3 2 39 39 H 1.08994 * 109.46898 * 175.00785 * 9 7 6 40 40 H 1.09004 * 109.46566 * 295.00284 * 9 7 6 41 41 H 0.96696 * 114.00232 * 180.02562 * 10 9 7 42 42 H 0.97000 * 119.99717 * 334.99054 * 11 7 6 43 43 H 1.09000 * 109.47030 * 299.99543 * 14 12 11 44 44 H 1.09005 * 109.47377 * 59.99840 * 14 12 11 45 45 H 1.08001 * 119.87797 * 0.02562 * 16 15 14 46 46 H 1.07999 * 119.74663 * 180.02562 * 17 16 15 47 47 H 1.08007 * 119.87316 * 179.97438 * 18 17 16 48 48 H 1.08005 * 120.12373 * 179.97438 * 19 18 17 49 49 H 0.97010 * 119.99860 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1259 7 6 3.9638 0.9033 1.5002 8 1 3.5264 -0.0849 1.6426 9 6 5.4881 0.8035 1.5862 10 8 6.0665 2.0750 1.2845 11 7 3.4741 1.8088 2.5425 12 6 3.2443 1.3433 3.7863 13 8 3.4425 0.1745 4.0425 14 6 2.7411 2.2749 4.8586 15 6 2.5682 1.5117 6.1465 16 6 1.3385 0.9922 6.4819 17 6 1.1767 0.2893 7.6656 18 6 2.2487 0.1016 8.5247 19 6 3.4868 0.6130 8.2103 20 6 3.6644 1.3224 7.0079 21 6 4.9338 1.8460 6.6707 22 1 5.2257 1.9293 5.6343 23 6 5.8120 2.2564 7.6802 24 7 7.0818 2.4238 7.4141 25 14 5.1709 2.5651 9.4074 26 1 5.3614 1.3446 10.2316 27 1 5.9161 3.6956 10.0173 28 1 3.7256 2.9006 9.3463 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8935 -0.5138 -0.8899 34 1 0.5487 2.1321 -1.3934 35 1 2.0053 3.1518 -1.3108 36 1 2.0635 1.5829 -2.1496 37 1 3.9943 0.8130 -0.6520 38 1 3.9374 2.4626 0.0142 39 1 5.7763 0.5030 2.5935 40 1 5.8447 0.0631 0.8701 41 1 7.0327 2.0858 1.3197 42 1 3.3154 2.7435 2.3375 43 1 3.4609 3.0798 5.0076 44 1 1.7830 2.6959 4.5538 45 1 0.4967 1.1321 5.8199 46 1 0.2083 -0.1151 7.9205 47 1 2.1111 -0.4473 9.4446 48 1 4.3203 0.4659 8.8812 49 1 7.6907 2.7080 8.1139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844038293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:47 Heat of formation + Delta-G solvation = -119.648615 kcal Electronic energy + Delta-G solvation = -27780.301397 eV Core-core repulsion = 24090.881845 eV Total energy + Delta-G solvation = -3689.419552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05090 -39.63453 -38.51366 -37.32493 -35.46707 -35.16069 -33.56821 -32.17388 -31.79040 -30.38510 -28.39834 -27.23390 -26.65238 -24.43688 -23.27066 -22.78729 -21.74341 -20.97730 -20.58815 -19.24004 -18.51336 -17.82555 -17.50349 -17.07105 -16.49844 -16.15952 -16.03065 -15.63205 -15.48800 -15.37510 -14.94334 -14.85753 -14.57302 -14.50062 -14.28450 -13.83269 -13.72388 -13.29039 -13.20361 -13.06564 -12.99163 -12.79338 -12.67476 -12.62745 -12.48221 -12.42563 -12.10205 -11.98731 -11.52844 -11.48136 -11.36734 -11.30000 -11.24835 -10.97028 -10.96536 -10.67418 -9.92242 -9.38383 -9.27048 -8.84564 -6.43605 0.80866 0.91244 1.26908 1.39700 1.49006 1.86636 2.14335 2.39527 2.67295 3.38444 3.55183 3.69383 3.90455 3.98228 4.10717 4.17903 4.29433 4.33205 4.37013 4.41094 4.46496 4.56074 4.59441 4.66333 4.69748 4.73624 4.74727 4.79919 4.90074 4.94682 4.95030 5.00780 5.13078 5.17605 5.18621 5.23257 5.27007 5.37678 5.38945 5.55257 5.59021 5.68143 5.69174 5.87901 5.96691 6.06592 6.31229 6.47132 6.71592 6.79021 6.82881 6.92408 7.48127 8.23575 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.003998 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.786617 B = 7002.198839 C = 8395.488224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.091 4.091 4 H 0.064 0.936 5 C -0.142 4.142 6 C -0.102 4.102 7 C 0.147 3.853 8 H 0.083 0.917 9 C 0.066 3.934 10 O -0.574 6.574 11 N -0.710 5.710 12 C 0.519 3.481 13 O -0.577 6.577 14 C -0.075 4.075 15 C -0.168 4.168 16 C -0.080 4.080 17 C -0.228 4.228 18 C -0.093 4.093 19 C -0.256 4.256 20 C 0.083 3.917 21 C -0.469 4.469 22 H 0.055 0.945 23 C 0.048 3.952 24 N -0.854 5.854 25 Si 0.962 3.038 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.251 1.251 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.010 0.990 40 H 0.073 0.927 41 H 0.391 0.609 42 H 0.409 0.591 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.126 0.874 46 H 0.128 0.872 47 H 0.121 0.879 48 H 0.090 0.910 49 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.990 1.271 -15.316 17.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.109 4.109 4 H 0.082 0.918 5 C -0.199 4.199 6 C -0.140 4.140 7 C 0.042 3.958 8 H 0.101 0.899 9 C -0.013 4.013 10 O -0.381 6.381 11 N -0.363 5.363 12 C 0.307 3.693 13 O -0.456 6.456 14 C -0.115 4.115 15 C -0.170 4.170 16 C -0.098 4.098 17 C -0.247 4.247 18 C -0.111 4.111 19 C -0.275 4.275 20 C 0.081 3.919 21 C -0.499 4.499 22 H 0.073 0.927 23 C -0.165 4.165 24 N -0.481 5.481 25 Si 0.786 3.214 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.174 1.174 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.091 0.909 41 H 0.240 0.760 42 H 0.245 0.755 43 H 0.108 0.892 44 H 0.136 0.864 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.139 0.861 48 H 0.108 0.892 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.188 0.678 -15.200 17.774 hybrid contribution 1.259 0.062 1.005 1.612 sum -7.929 0.740 -14.195 16.276 Atomic orbital electron populations 1.21792 0.95454 1.01601 1.01931 1.21629 0.96444 0.96588 1.01367 1.21157 0.94454 0.96229 0.99087 0.91798 1.21825 1.01642 1.00310 0.96153 1.21730 0.95976 1.02720 0.93535 1.21142 0.91086 0.94869 0.88725 0.89900 1.22563 0.94760 0.85974 0.98042 1.86365 1.26453 1.32226 1.93103 1.45874 1.67608 1.13637 1.09159 1.21032 0.76181 0.88633 0.83500 1.90646 1.53156 1.20095 1.81660 1.20333 1.03213 0.97241 0.90713 1.19564 0.93330 1.06238 0.97871 1.20888 0.96112 0.96303 0.96458 1.20874 0.98790 1.07850 0.97142 1.20975 0.92785 0.98207 0.99119 1.21150 0.97763 1.07734 1.00839 1.17721 0.92529 0.89938 0.91717 1.19297 0.97822 1.38265 0.94480 0.92717 1.26749 0.93870 0.91902 1.04012 1.69736 1.04332 1.36475 1.37597 0.85535 0.80222 0.77986 0.77608 1.19407 1.20473 1.17440 0.93649 0.92936 0.91292 0.93998 0.91133 0.91996 0.92383 0.92154 0.89571 0.90363 0.97138 0.90901 0.75999 0.75491 0.89175 0.86404 0.85645 0.85373 0.86073 0.89207 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.67 71.98 0.70 -1.91 16 2 C -0.12 -2.33 5.29 30.60 0.16 -2.17 16 3 C -0.09 -1.61 2.33 -10.80 -0.03 -1.64 16 4 H 0.06 1.27 7.56 -2.39 -0.02 1.25 16 5 C -0.14 -1.97 8.94 71.98 0.64 -1.33 16 6 C -0.10 -1.99 3.94 30.59 0.12 -1.86 16 7 C 0.15 4.00 2.25 44.99 0.10 4.10 16 8 H 0.08 2.55 5.76 -2.39 -0.01 2.54 16 9 C 0.07 1.89 6.85 71.98 0.49 2.38 16 10 O -0.57 -15.19 12.81 -148.98 -1.91 -17.10 16 11 N -0.71 -21.56 4.35 -442.54 -1.92 -23.48 16 12 C 0.52 20.63 7.38 87.65 0.65 21.28 16 13 O -0.58 -28.43 15.70 -3.03 -0.05 -28.48 16 14 C -0.08 -2.92 5.20 29.10 0.15 -2.77 16 15 C -0.17 -7.79 4.43 -19.40 -0.09 -7.87 16 16 C -0.08 -3.27 9.66 22.22 0.21 -3.06 16 17 C -0.23 -9.17 10.05 22.46 0.23 -8.94 16 18 C -0.09 -4.06 10.02 22.22 0.22 -3.83 16 19 C -0.26 -12.95 7.14 22.73 0.16 -12.79 16 20 C 0.08 4.42 5.08 -21.29 -0.11 4.31 16 21 C -0.47 -26.87 8.53 23.46 0.20 -26.67 16 22 H 0.05 3.40 7.03 -2.91 -0.02 3.38 16 23 C 0.05 2.66 5.42 85.26 0.46 3.12 16 24 N -0.85 -48.21 13.93 21.83 0.30 -47.91 16 25 Si 0.96 44.60 24.52 68.60 1.68 46.28 16 26 H -0.27 -12.10 6.72 99.48 0.67 -11.43 16 27 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 28 H -0.25 -11.75 6.84 99.48 0.68 -11.07 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.98 6.57 -2.39 -0.02 0.96 16 32 H 0.04 1.00 6.31 -2.39 -0.02 0.99 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 0.79 6.59 -2.38 -0.02 0.78 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.55 7.71 -2.39 -0.02 1.53 16 39 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.39 7.71 9.12 -74.06 -0.68 7.03 16 42 H 0.41 10.36 8.60 -92.71 -0.80 9.56 16 43 H 0.09 3.66 7.17 -2.39 -0.02 3.65 16 44 H 0.12 3.48 8.05 -2.38 -0.02 3.46 16 45 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 46 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 48 H 0.09 4.59 4.80 -2.91 -0.01 4.58 16 49 H 0.29 14.79 8.30 -92.70 -0.77 14.02 16 Total: -1.00 -71.53 387.03 1.81 -69.72 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: -0.58 Total: 40.61 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 4.28 Total: -39.64 kcal Atomic # 7 Polarization: -69.77 SS G_CDS: -1.62 Total: -71.39 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.96 Total: -45.58 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.68 Total: 46.28 kcal Total: -71.53 1.81 -69.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844038293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.924 kcal (2) G-P(sol) polarization free energy of solvation -71.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds